Wall clock time and date at job start Tue Mar 31 2020 22:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36776 * 125.80355 * 2 1 4 4 C 1.47253 * 126.93789 * 0.02562 * 3 2 1 5 5 O 1.21629 * 120.00341 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99777 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00096 * 180.02562 * 6 4 3 8 8 C 1.50694 * 109.47405 * 179.97438 * 7 6 4 9 9 C 1.38258 * 120.02332 * 270.22002 * 8 7 6 10 10 C 1.38143 * 119.96364 * 180.23476 * 9 8 7 11 11 C 1.38449 * 120.10356 * 359.52277 * 10 9 8 12 12 C 1.38065 * 119.93194 * 0.25758 * 11 10 9 13 13 C 1.38148 * 120.01921 * 89.99621 * 8 7 6 14 14 C 1.50781 * 108.86152 * 179.97438 * 12 11 10 15 15 N 1.46634 * 107.70246 * 0.02562 * 14 12 11 16 16 C 1.36929 * 126.56839 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00070 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00426 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99648 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00072 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47081 * 90.00069 * 20 18 16 22 22 H 1.48498 * 109.46993 * 210.00193 * 20 18 16 23 23 H 1.48497 * 109.47025 * 330.00126 * 20 18 16 24 24 C 1.46643 * 106.87045 * 359.97438 * 15 14 12 25 25 C 1.46686 * 106.11508 * 180.27822 * 3 2 1 26 26 C 1.34486 * 106.33343 * 359.56979 * 25 3 2 27 27 N 1.34657 * 125.80227 * 180.02562 * 2 1 3 28 28 C 1.46507 * 124.85141 * 0.02562 * 27 2 1 29 29 H 1.09005 * 109.46669 * 90.00372 * 1 2 3 30 30 H 1.08998 * 109.47441 * 210.00206 * 1 2 3 31 31 H 1.08993 * 109.47509 * 330.00669 * 1 2 3 32 32 H 0.96997 * 120.00206 * 359.97438 * 6 4 3 33 33 H 1.09005 * 109.47248 * 59.99819 * 7 6 4 34 34 H 1.09003 * 109.47210 * 300.00035 * 7 6 4 35 35 H 1.07998 * 120.01283 * 0.03461 * 9 8 7 36 36 H 1.08002 * 119.95132 * 179.80781 * 10 9 8 37 37 H 1.08002 * 119.94394 * 0.03126 * 13 8 7 38 38 H 1.09000 * 109.81260 * 119.54868 * 14 12 11 39 39 H 1.08998 * 109.81519 * 240.45467 * 14 12 11 40 40 H 0.97001 * 119.99333 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.80797 * 240.45438 * 24 15 14 42 42 H 1.08999 * 109.81012 * 119.54608 * 24 15 14 43 43 H 1.08005 * 126.83196 * 179.73681 * 25 3 2 44 44 H 1.07997 * 125.57178 * 180.14791 * 26 25 3 45 45 H 1.09004 * 109.46542 * 89.99854 * 28 27 2 46 46 H 1.09000 * 109.47146 * 210.00220 * 28 27 2 47 47 H 1.09002 * 109.46841 * 330.00684 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5155 0.0005 5 8 0.6839 2.7838 0.0015 6 7 2.7850 3.5054 -0.0001 7 6 2.3505 4.9044 0.0010 8 6 3.5582 5.8056 0.0007 9 6 4.1162 6.2150 1.1976 10 6 5.2205 7.0451 1.1959 11 6 5.7755 7.4599 -0.0027 12 6 5.2210 7.0475 -1.1980 13 6 4.1114 6.2196 -1.1956 14 6 6.0148 7.6411 -2.3341 15 7 7.0940 8.4451 -1.7518 16 6 8.0436 9.1548 -2.4370 17 1 8.0418 9.1562 -3.5171 18 6 9.0078 9.8734 -1.7437 19 7 9.0091 9.8730 -0.4275 20 14 10.3036 10.8411 -2.6787 21 1 9.8098 12.2196 -2.9253 22 1 11.5525 10.8985 -1.8774 23 1 10.5786 10.1742 -3.9767 24 6 6.9610 8.3445 -0.2948 25 6 3.6882 0.6151 -0.0068 26 6 3.6096 -0.7274 -0.0007 27 7 2.2947 -1.0921 -0.0005 28 6 1.8094 -2.4745 -0.0016 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 3.7311 3.2914 -0.0005 33 1 1.7529 5.0986 0.8918 34 1 1.7510 5.0994 -0.8882 35 1 3.6871 5.8885 2.1333 36 1 5.6543 7.3672 2.1310 37 1 3.6772 5.8972 -2.1305 38 1 6.4373 6.8440 -2.9458 39 1 5.3703 8.2739 -2.9442 40 1 9.6831 10.3749 0.0569 41 1 6.7971 9.3347 0.1303 42 1 7.8635 7.9041 0.1290 43 1 4.5890 1.2109 -0.0127 44 1 4.4497 -1.4060 -0.0010 45 1 1.6894 -2.8165 -1.0297 46 1 2.5285 -3.1125 0.5120 47 1 0.8490 -2.5227 0.5117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054280149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:55 Heat of formation + Delta-G solvation = 68.076324 kcal Electronic energy + Delta-G solvation = -27694.260234 eV Core-core repulsion = 23843.444473 eV Total energy + Delta-G solvation = -3850.815760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.59802 -39.76790 -38.92742 -36.27641 -34.39257 -33.15467 -32.19545 -31.82659 -31.08914 -29.72590 -27.88600 -26.74154 -26.53703 -25.82229 -24.34205 -22.30877 -21.94793 -20.39233 -20.26015 -20.13505 -19.14291 -17.64904 -16.99583 -16.07085 -15.97690 -15.83711 -15.47322 -15.12112 -14.62683 -14.40750 -14.33816 -14.23020 -14.08200 -13.48934 -13.39115 -13.25563 -13.13080 -12.96781 -12.94867 -12.76786 -12.43297 -12.20913 -11.90118 -11.80847 -11.74658 -11.60469 -11.51159 -11.07026 -10.83389 -10.44194 -10.19286 -10.12298 -9.87893 -9.78561 -9.07413 -8.93327 -8.81273 -8.37720 -8.36057 -7.98130 -6.84235 -5.80970 -3.14087 1.58928 1.64407 1.79663 2.19476 2.49194 3.37881 3.42442 3.44680 3.48650 3.53868 4.21284 4.31615 4.41735 4.47405 4.62652 4.65986 4.79072 4.85913 4.98311 5.03273 5.13481 5.30396 5.30830 5.37712 5.39732 5.43763 5.57550 5.62569 5.65814 5.71869 5.79286 5.91413 5.99918 6.07278 6.16525 6.48572 6.54242 6.55445 6.57710 6.58219 6.78920 6.82408 6.85907 6.94718 7.09073 7.34766 7.39511 7.54736 7.66061 7.70062 8.14111 8.36535 9.12071 9.71924 10.39335 11.33150 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.001937 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.005898 B =14452.124902 C =15016.753391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.103 3.897 3 C -0.237 4.237 4 C 0.591 3.409 5 O -0.557 6.557 6 N -0.720 5.720 7 C 0.172 3.828 8 C -0.130 4.130 9 C -0.103 4.103 10 C -0.112 4.112 11 C -0.082 4.082 12 C -0.107 4.107 13 C -0.084 4.084 14 C 0.176 3.824 15 N -0.601 5.601 16 C -0.225 4.225 17 H 0.084 0.916 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.918 3.082 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.206 3.794 25 C -0.164 4.164 26 C -0.020 4.020 27 N -0.447 5.447 28 C 0.067 3.933 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.402 0.598 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.255 0.745 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.147 0.853 44 H 0.167 0.833 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.641 -23.712 3.593 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.014 4.014 3 C -0.246 4.246 4 C 0.380 3.620 5 O -0.437 6.437 6 N -0.371 5.371 7 C 0.049 3.951 8 C -0.130 4.130 9 C -0.122 4.122 10 C -0.131 4.131 11 C -0.083 4.083 12 C -0.108 4.108 13 C -0.103 4.103 14 C 0.050 3.950 15 N -0.327 5.327 16 C -0.353 4.353 17 H 0.101 0.899 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.748 3.252 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.081 3.919 25 C -0.188 4.188 26 C -0.145 4.145 27 N -0.124 5.124 28 C -0.074 4.074 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.164 0.836 44 H 0.184 0.816 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.364 -23.704 3.620 28.479 hybrid contribution 1.392 0.345 -0.400 1.489 sum -13.972 -23.359 3.220 27.409 Atomic orbital electron populations 1.20562 0.87131 1.03998 1.03345 1.20317 0.93739 0.85183 1.02139 1.20121 0.93241 0.91965 1.19314 1.17338 0.85225 0.84027 0.75388 1.90717 1.16686 1.84512 1.51826 1.45916 1.10031 1.05568 1.75536 1.20063 0.93732 0.78696 1.02570 1.19495 0.98413 1.01669 0.93444 1.20826 0.96214 0.98167 0.96995 1.20491 0.96507 0.98853 0.97236 1.21532 0.97545 0.96260 0.92981 1.20713 0.95636 0.97429 0.96985 1.20308 0.95228 0.97524 0.97202 1.19703 0.89444 0.93537 0.92323 1.43957 1.31249 1.56288 1.01231 1.18979 1.03949 1.21882 0.90472 0.89866 1.24842 0.99321 1.00444 0.95826 1.69927 1.36617 1.45474 1.04990 0.86022 0.80763 0.79857 0.78545 1.21458 1.21573 1.20556 1.19732 0.90840 0.95713 0.85572 1.22068 0.95876 0.93620 1.07284 1.21697 0.85322 0.96304 1.11213 1.43555 1.06078 1.06092 1.56641 1.22097 1.01706 0.80090 1.03541 0.90529 0.92084 0.88008 0.76320 0.90967 0.90960 0.86334 0.86178 0.86551 0.94619 0.94607 0.93484 0.91834 0.91836 0.83560 0.81574 0.90654 0.89569 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.52 36.00 0.34 -0.45 16 2 C 0.10 1.06 6.89 -81.88 -0.56 0.49 16 3 C -0.24 -2.82 6.29 -103.35 -0.65 -3.47 16 4 C 0.59 8.06 7.81 -12.59 -0.10 7.96 16 5 O -0.56 -8.92 14.81 5.25 0.08 -8.84 16 6 N -0.72 -8.85 5.54 -62.62 -0.35 -9.20 16 7 C 0.17 2.19 5.80 -5.20 -0.03 2.16 16 8 C -0.13 -1.84 5.25 -104.65 -0.55 -2.39 16 9 C -0.10 -1.49 9.70 -39.61 -0.38 -1.87 16 10 C -0.11 -1.89 10.05 -39.54 -0.40 -2.29 16 11 C -0.08 -1.66 6.22 -104.57 -0.65 -2.31 16 12 C -0.11 -2.06 6.22 -104.57 -0.65 -2.71 16 13 C -0.08 -1.32 9.70 -39.54 -0.38 -1.71 16 14 C 0.18 3.80 7.25 -5.08 -0.04 3.76 16 15 N -0.60 -15.65 3.41 -175.67 -0.60 -16.25 16 16 C -0.23 -6.26 10.32 -15.06 -0.16 -6.42 16 17 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -26.76 10.44 55.49 0.58 -26.18 16 20 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 C 0.21 5.08 5.39 -5.08 -0.03 5.05 16 25 C -0.16 -1.63 10.56 -37.50 -0.40 -2.02 16 26 C -0.02 -0.16 11.34 -16.82 -0.19 -0.35 16 27 N -0.45 -3.55 3.09 -119.87 -0.37 -3.92 16 28 C 0.07 0.25 10.82 59.85 0.65 0.90 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.35 6.92 -51.93 -0.36 -0.01 16 31 H 0.10 1.07 6.46 -51.93 -0.34 0.74 16 32 H 0.40 4.48 7.59 -40.82 -0.31 4.17 16 33 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 34 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.06 1.72 7.49 -51.93 -0.39 1.33 16 42 H 0.06 1.71 7.49 -51.93 -0.39 1.32 16 43 H 0.15 1.24 7.70 -52.48 -0.40 0.84 16 44 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.09 0.18 8.13 -51.93 -0.42 -0.25 16 47 H 0.08 0.23 6.88 -51.93 -0.36 -0.13 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -33.55 388.55 -10.83 -44.38 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.73 Total: 3.30 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -4.27 Total: -5.97 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.74 Total: -55.54 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.55 -10.83 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054280149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.459 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds