Wall clock time and date at job start Tue Mar 31 2020 22:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36621 * 120.92060 * 2 1 4 4 C 1.39273 * 119.90626 * 180.02562 * 3 2 1 5 5 N 1.31144 * 121.76820 * 0.27140 * 4 3 2 6 6 C 1.33619 * 121.39432 * 359.44037 * 5 4 3 7 7 C 1.40765 * 120.83858 * 180.27432 * 6 5 4 8 8 C 1.35696 * 120.11541 * 180.29351 * 7 6 5 9 9 C 1.40633 * 120.92415 * 359.97438 * 8 7 6 10 10 C 1.47766 * 119.80036 * 180.02562 * 9 8 7 11 11 O 1.21564 * 120.00015 * 146.65536 * 10 9 8 12 12 N 1.34780 * 120.00029 * 326.65052 * 10 9 8 13 13 C 1.47017 * 125.64900 * 183.21714 * 12 10 9 14 14 C 1.54334 * 107.26883 * 178.84860 * 13 12 10 15 15 H 1.08995 * 110.51525 * 96.44885 * 14 13 12 16 16 C 1.52997 * 111.00191 * 219.59991 * 14 13 12 17 17 C 1.55155 * 103.01742 * 338.14104 * 14 13 12 18 18 H 1.09001 * 111.03958 * 153.39379 * 17 14 13 19 19 N 1.46498 * 111.00317 * 277.23123 * 17 14 13 20 20 C 1.36937 * 119.99985 * 198.64996 * 19 17 14 21 21 H 1.07999 * 119.99927 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99998 * 179.97438 * 20 19 17 23 23 N 1.31614 * 120.00085 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99843 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47230 * 60.00341 * 24 22 20 26 26 H 1.48505 * 109.46795 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47252 * 300.00048 * 24 22 20 28 28 C 1.47423 * 125.64747 * 3.52311 * 12 10 9 29 29 C 1.38543 * 120.39637 * 0.02562 * 9 8 7 30 30 C 1.40183 * 119.40029 * 359.97438 * 29 9 8 31 31 H 1.09000 * 109.46935 * 90.00215 * 1 2 3 32 32 H 1.09001 * 109.47599 * 210.00563 * 1 2 3 33 33 H 1.09006 * 109.47503 * 330.00443 * 1 2 3 34 34 H 1.08001 * 120.04658 * 0.03635 * 3 2 1 35 35 H 1.07993 * 119.11547 * 180.02562 * 4 3 2 36 36 H 1.08007 * 119.94099 * 0.27499 * 7 6 5 37 37 H 1.08000 * 119.53569 * 179.97438 * 8 7 6 38 38 H 1.09005 * 109.87998 * 298.39687 * 13 12 10 39 39 H 1.09001 * 109.88601 * 59.55629 * 13 12 10 40 40 H 1.09001 * 109.46708 * 173.78008 * 16 14 13 41 41 H 1.08998 * 109.47621 * 293.78083 * 16 14 13 42 42 H 1.09000 * 109.47255 * 53.78446 * 16 14 13 43 43 H 0.96996 * 120.00315 * 18.65075 * 19 17 14 44 44 H 0.97005 * 120.00073 * 179.97438 * 23 22 20 45 45 H 1.09002 * 110.36383 * 322.93102 * 28 12 10 46 46 H 1.08999 * 110.36742 * 85.25518 * 28 12 10 47 47 H 1.08000 * 120.30011 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1474 -0.0005 5 7 4.2721 0.0204 -0.0063 6 6 3.6479 -1.1610 -0.0009 7 6 4.3794 -2.3637 -0.0014 8 6 3.7304 -3.5554 -0.0018 9 6 2.3253 -3.6130 -0.0012 10 6 1.6441 -4.9243 -0.0011 11 8 0.5837 -5.0584 0.5780 12 7 2.1984 -5.9717 -0.6432 13 6 1.6000 -7.3077 -0.7792 14 6 2.5762 -8.1643 -1.6128 15 1 3.2133 -8.7614 -0.9604 16 6 1.8185 -9.0606 -2.5943 17 6 3.4123 -7.1012 -2.3732 18 1 4.4007 -7.4865 -2.6237 19 7 2.7107 -6.6425 -3.5747 20 6 3.4038 -6.0134 -4.5741 21 1 4.4678 -5.8557 -4.4768 22 6 2.7391 -5.5792 -5.7128 23 7 1.4426 -5.7718 -5.8317 24 14 3.6846 -4.7203 -7.0759 25 1 4.7353 -5.6302 -7.5988 26 1 2.7518 -4.3582 -8.1731 27 1 4.3183 -3.4893 -6.5390 28 6 3.5081 -5.9693 -1.3200 29 6 1.5758 -2.4478 -0.0007 30 6 2.2308 -1.2084 -0.0002 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6848 2.1163 0.0006 35 1 4.1436 2.0814 -0.0001 36 1 5.4592 -2.3378 -0.0018 37 1 4.3010 -4.4723 -0.0027 38 1 1.4606 -7.7534 0.2057 39 1 0.6419 -7.2341 -1.2939 40 1 2.5299 -9.5708 -3.2438 41 1 1.2391 -9.7986 -2.0396 42 1 1.1469 -8.4511 -3.1989 43 1 1.7552 -6.7844 -3.6623 44 1 0.9780 -5.4681 -6.6272 45 1 3.6809 -5.0102 -1.8084 46 1 4.3043 -6.1815 -0.6065 47 1 0.4968 -2.4939 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054679635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:51 Heat of formation + Delta-G solvation = 39.052548 kcal Electronic energy + Delta-G solvation = -29506.048627 eV Core-core repulsion = 25653.974302 eV Total energy + Delta-G solvation = -3852.074326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.06076 -39.84015 -37.76796 -36.62220 -34.79066 -33.92345 -32.54708 -30.83389 -30.45122 -30.36780 -28.07369 -27.84009 -26.39610 -24.36988 -23.91673 -23.54556 -22.09130 -21.10542 -19.83936 -19.29819 -18.39390 -17.53558 -17.07616 -16.68014 -16.01838 -15.70752 -15.16902 -14.72413 -14.60017 -14.53128 -14.22957 -14.08350 -13.72942 -13.58330 -13.22246 -13.06276 -13.02716 -12.95045 -12.76554 -12.54626 -12.16594 -12.05042 -11.80100 -11.67910 -11.53193 -11.36309 -11.15019 -10.92809 -10.73138 -10.49684 -10.32831 -10.25085 -9.97556 -9.75807 -9.66629 -9.56517 -9.05459 -8.81607 -8.37534 -8.14970 -7.05646 -5.85160 -3.14963 0.22205 0.66131 1.87689 2.51037 3.14621 3.38943 3.43775 3.44423 3.44656 4.06123 4.19732 4.39587 4.49602 4.51120 4.59245 4.68122 4.92281 5.01327 5.02585 5.10882 5.21651 5.23510 5.28591 5.35234 5.39207 5.50059 5.58184 5.59617 5.70937 5.79008 5.84707 5.88217 5.92448 5.93858 5.98446 6.12323 6.16665 6.22822 6.29534 6.32930 6.33143 6.43774 6.46762 6.57846 6.70537 6.75812 6.88409 7.61664 7.81841 7.82927 8.32563 8.39536 9.44688 9.99446 10.33944 11.36791 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009317 B = 0.004084 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.511937 B = 6854.442694 C = 8458.038714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 C -0.190 4.190 4 C 0.139 3.861 5 N -0.482 5.482 6 C 0.145 3.855 7 C -0.100 4.100 8 C -0.075 4.075 9 C -0.114 4.114 10 C 0.572 3.428 11 O -0.550 6.550 12 N -0.593 5.593 13 C 0.117 3.883 14 C -0.113 4.113 15 H 0.080 0.920 16 C -0.132 4.132 17 C 0.171 3.829 18 H 0.072 0.928 19 N -0.708 5.708 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.006 4.006 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.060 3.940 29 C -0.035 4.035 30 C -0.109 4.109 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 7.049 13.662 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.020 4.020 3 C -0.210 4.210 4 C -0.033 4.033 5 N -0.190 5.190 6 C 0.024 3.976 7 C -0.119 4.119 8 C -0.095 4.095 9 C -0.117 4.117 10 C 0.361 3.639 11 O -0.430 6.430 12 N -0.324 5.324 13 C -0.005 4.005 14 C -0.133 4.133 15 H 0.098 0.902 16 C -0.190 4.190 17 C 0.058 3.942 18 H 0.090 0.910 19 N -0.349 5.349 20 C -0.378 4.378 21 H 0.089 0.911 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.735 3.265 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.066 4.066 29 C -0.055 4.055 30 C -0.111 4.111 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.223 0.777 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.750 6.985 13.828 15.734 hybrid contribution -0.654 0.650 -0.935 1.313 sum 2.096 7.635 12.893 15.129 Atomic orbital electron populations 1.20946 0.89847 1.03769 1.03604 1.20236 0.96762 0.92037 0.92926 1.21720 0.95625 0.98663 1.04951 1.22939 0.91501 0.96432 0.92458 1.68045 1.39922 0.97721 1.13355 1.18966 0.89548 0.92534 0.96592 1.20656 1.00476 0.89731 1.01009 1.21332 0.93187 0.98997 0.96017 1.19852 0.93972 0.93461 1.04412 1.17815 0.84335 0.83041 0.78673 1.90748 1.22679 1.84248 1.45309 1.48181 1.20788 1.10853 1.52608 1.21984 0.97353 0.81857 0.99346 1.22501 0.97268 0.96488 0.97037 0.90154 1.21598 1.00406 0.98611 0.98346 1.21384 0.95766 0.90215 0.86799 0.91011 1.42370 1.08467 1.68872 1.15208 1.19160 0.92398 1.30339 0.95916 0.91062 1.24727 0.95664 1.01426 0.98469 1.69645 1.07156 1.51650 1.29115 0.86313 0.78714 0.79580 0.81846 1.21112 1.21695 1.21229 1.23729 0.83204 1.04354 0.95295 1.21337 1.00340 0.89753 0.94028 1.18625 0.94126 0.93850 1.04536 0.89755 0.90384 0.90556 0.84550 0.82437 0.84214 0.83960 0.92062 0.91314 0.92044 0.93635 0.91254 0.77711 0.93346 0.89431 0.92296 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.59 36.00 0.35 -0.82 16 2 C -0.01 -0.14 5.92 -104.22 -0.62 -0.76 16 3 C -0.19 -1.93 9.72 -39.78 -0.39 -2.32 16 4 C 0.14 1.54 11.14 -17.46 -0.19 1.34 16 5 N -0.48 -6.83 10.33 -10.92 -0.11 -6.95 16 6 C 0.14 2.19 6.61 -84.78 -0.56 1.63 16 7 C -0.10 -1.41 9.95 -39.54 -0.39 -1.81 16 8 C -0.08 -1.09 7.79 -39.59 -0.31 -1.40 16 9 C -0.11 -1.88 5.57 -104.99 -0.58 -2.47 16 10 C 0.57 10.56 7.56 -12.36 -0.09 10.47 16 11 O -0.55 -11.43 17.08 5.31 0.09 -11.34 16 12 N -0.59 -10.26 3.33 -171.65 -0.57 -10.83 16 13 C 0.12 1.89 6.48 -3.06 -0.02 1.87 16 14 C -0.11 -1.68 3.40 -88.78 -0.30 -1.99 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 16 C -0.13 -2.02 8.73 37.16 0.32 -1.69 16 17 C 0.17 3.02 3.44 -65.78 -0.23 2.80 16 18 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 19 N -0.71 -16.30 4.74 -51.35 -0.24 -16.55 16 20 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 23 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 24 Si 0.90 21.84 29.55 -169.99 -5.02 16.82 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.06 0.97 4.77 -2.53 -0.01 0.96 16 29 C -0.03 -0.54 8.89 -38.74 -0.34 -0.89 16 30 C -0.11 -1.60 5.74 -106.82 -0.61 -2.21 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.74 6.51 -51.93 -0.34 0.41 16 33 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 1.69 8.06 -52.48 -0.42 1.26 16 37 H 0.14 1.80 5.11 -52.49 -0.27 1.53 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.23 7.78 -51.93 -0.40 0.82 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.26 6.37 -51.93 -0.33 0.93 16 43 H 0.39 9.71 6.09 -40.82 -0.25 9.47 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.09 1.60 6.50 -51.93 -0.34 1.26 16 46 H 0.06 0.77 7.18 -51.93 -0.37 0.39 16 47 H 0.14 2.09 6.33 -52.49 -0.33 1.75 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -32.67 379.32 -10.06 -42.73 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.40 Total: 10.96 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -4.23 Total: -4.11 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.20 Total: -60.76 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.67 -10.06 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054679635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.782 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds