Wall clock time and date at job start Tue Mar 31 2020 22:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36609 * 120.91738 * 2 1 4 4 C 1.39278 * 119.90279 * 180.02562 * 3 2 1 5 5 N 1.31139 * 121.77271 * 0.02562 * 4 3 2 6 6 C 1.33620 * 121.39123 * 0.02562 * 5 4 3 7 7 C 1.40773 * 120.83322 * 180.02562 * 6 5 4 8 8 C 1.35695 * 120.11060 * 179.97438 * 7 6 5 9 9 C 1.40639 * 120.92461 * 359.97438 * 8 7 6 10 10 C 1.47771 * 119.79715 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00005 * 351.91946 * 10 9 8 12 12 N 1.34774 * 119.99406 * 171.92587 * 10 9 8 13 13 C 1.47021 * 125.65353 * 5.38458 * 12 10 9 14 14 C 1.54327 * 107.27121 * 181.02304 * 13 12 10 15 15 H 1.08996 * 110.72037 * 263.83492 * 14 13 12 16 16 N 1.46500 * 110.71525 * 140.55901 * 14 13 12 17 17 C 1.36934 * 120.00219 * 86.45756 * 16 14 13 18 18 H 1.08001 * 119.99828 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00120 * 179.97438 * 17 16 14 20 20 N 1.31625 * 120.00004 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00068 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47340 * 89.99954 * 21 19 17 23 23 H 1.48505 * 109.47009 * 209.99972 * 21 19 17 24 24 H 1.48497 * 109.46961 * 329.99822 * 21 19 17 25 25 C 1.55156 * 102.94075 * 22.20034 * 14 13 12 26 26 H 1.08998 * 111.01067 * 82.60781 * 25 14 13 27 27 C 1.53004 * 111.00201 * 206.42380 * 25 14 13 28 28 C 1.47428 * 125.64206 * 185.08220 * 12 10 9 29 29 C 1.38544 * 120.39690 * 359.97438 * 9 8 7 30 30 C 1.40181 * 119.40170 * 0.02562 * 29 9 8 31 31 H 1.09008 * 109.46995 * 269.97416 * 1 2 3 32 32 H 1.08994 * 109.47555 * 29.97134 * 1 2 3 33 33 H 1.08999 * 109.47151 * 149.98004 * 1 2 3 34 34 H 1.08003 * 120.05025 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.10865 * 179.97438 * 4 3 2 36 36 H 1.07994 * 119.94159 * 0.24404 * 7 6 5 37 37 H 1.07999 * 119.53386 * 179.97438 * 8 7 6 38 38 H 1.08995 * 109.88225 * 300.44261 * 13 12 10 39 39 H 1.09001 * 109.87716 * 61.60724 * 13 12 10 40 40 H 0.97000 * 119.99751 * 266.45545 * 16 14 13 41 41 H 0.96994 * 119.99985 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.47122 * 59.99406 * 27 25 14 43 43 H 1.08997 * 109.47274 * 179.97438 * 27 25 14 44 44 H 1.08997 * 109.46665 * 299.99576 * 27 25 14 45 45 H 1.08994 * 110.36833 * 274.74268 * 28 12 10 46 46 H 1.09000 * 110.36871 * 37.06668 * 28 12 10 47 47 H 1.08004 * 120.29399 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2722 0.0204 -0.0016 6 6 3.6479 -1.1610 -0.0026 7 6 4.3796 -2.3637 -0.0032 8 6 3.7306 -3.5554 -0.0037 9 6 2.3254 -3.6131 -0.0033 10 6 1.6443 -4.9244 -0.0045 11 8 2.2890 -5.9440 -0.1538 12 7 0.3082 -4.9899 0.1599 13 6 -0.6030 -3.8387 0.2383 14 6 -2.0263 -4.3949 0.4537 15 1 -2.5581 -4.4714 -0.4947 16 7 -2.7705 -3.5613 1.4011 17 6 -3.4555 -2.4627 0.9553 18 1 -3.4469 -2.2104 -0.0948 19 6 -4.1611 -1.6732 1.8529 20 7 -4.8191 -0.6169 1.4244 21 14 -4.1755 -2.1091 3.6693 22 1 -3.0414 -1.4337 4.3495 23 1 -5.4546 -1.6604 4.2758 24 1 -4.0422 -3.5797 3.8264 25 6 -1.7627 -5.8026 1.0505 26 1 -1.5798 -5.7443 2.1234 27 6 -2.9222 -6.7533 0.7458 28 6 -0.4824 -6.2280 0.2846 29 6 1.5759 -2.4478 -0.0017 30 6 2.2308 -1.2084 -0.0011 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5133 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6848 2.1163 0.0004 35 1 4.1435 2.0815 -0.0010 36 1 5.4592 -2.3378 0.0013 37 1 4.3012 -4.4723 -0.0046 38 1 -0.3233 -3.2011 1.0769 39 1 -0.5635 -3.2709 -0.6912 40 1 -2.7780 -3.7877 2.3443 41 1 -5.3124 -0.0655 2.0516 42 1 -3.0406 -6.8478 -0.3336 43 1 -2.7114 -7.7328 1.1749 44 1 -3.8406 -6.3566 1.1786 45 1 -0.7385 -6.6155 -0.7014 46 1 0.0698 -6.9749 0.8550 47 1 0.4969 -2.4941 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054679643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:57 Heat of formation + Delta-G solvation = 56.795995 kcal Electronic energy + Delta-G solvation = -29787.072365 eV Core-core repulsion = 25935.767452 eV Total energy + Delta-G solvation = -3851.304912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.16467 -39.98848 -37.92869 -36.65440 -34.81149 -34.31939 -32.85017 -31.28528 -30.71716 -30.35196 -28.26788 -27.87718 -26.41217 -24.86413 -23.66713 -23.51304 -21.71607 -21.03137 -20.28033 -20.09195 -18.23695 -17.68937 -17.35694 -16.62395 -16.22919 -15.87893 -15.37930 -14.90121 -14.58212 -14.44694 -14.32929 -14.18657 -13.70053 -13.44448 -13.40931 -13.22946 -12.96655 -12.91747 -12.70651 -12.65441 -12.50147 -12.14437 -11.92108 -11.68856 -11.63366 -11.54374 -11.36664 -11.15151 -10.77565 -10.72514 -10.44419 -10.19248 -10.14903 -9.93547 -9.76748 -9.51703 -9.11001 -8.89320 -8.52730 -8.25776 -7.52773 -5.96803 -3.35434 0.17559 0.64993 1.85694 2.40616 3.00606 3.23490 3.26921 3.32004 3.34037 4.05880 4.17946 4.39637 4.41692 4.48124 4.58058 4.71660 4.78868 4.87325 4.91236 5.04208 5.06559 5.22385 5.30541 5.37919 5.39491 5.45978 5.49602 5.58519 5.63741 5.71044 5.73289 5.78912 5.83587 5.86670 5.93158 5.95802 6.02686 6.10227 6.19278 6.20498 6.23381 6.32452 6.35143 6.40618 6.50428 6.60678 6.73836 7.56288 7.76416 7.82344 8.19225 8.21436 8.97731 9.70428 9.88354 11.20192 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009086 B = 0.004753 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.028231 B = 5889.989964 C = 8445.376755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.001 4.001 3 C -0.194 4.194 4 C 0.145 3.855 5 N -0.491 5.491 6 C 0.147 3.853 7 C -0.109 4.109 8 C -0.051 4.051 9 C -0.134 4.134 10 C 0.572 3.428 11 O -0.547 6.547 12 N -0.608 5.608 13 C 0.059 3.941 14 C 0.181 3.819 15 H 0.078 0.922 16 N -0.735 5.735 17 C -0.256 4.256 18 H 0.093 0.907 19 C 0.015 3.985 20 N -0.925 5.925 21 Si 0.878 3.122 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.117 4.117 26 H 0.083 0.917 27 C -0.135 4.135 28 C 0.115 3.885 29 C -0.084 4.084 30 C -0.115 4.115 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.365 0.635 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 -2.354 -2.837 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.008 4.008 3 C -0.214 4.214 4 C -0.027 4.027 5 N -0.200 5.200 6 C 0.025 3.975 7 C -0.128 4.128 8 C -0.071 4.071 9 C -0.137 4.137 10 C 0.362 3.638 11 O -0.426 6.426 12 N -0.340 5.340 13 C -0.066 4.066 14 C 0.069 3.931 15 H 0.096 0.904 16 N -0.377 5.377 17 C -0.385 4.385 18 H 0.111 0.889 19 C -0.182 4.182 20 N -0.571 5.571 21 Si 0.708 3.292 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.202 1.202 25 C -0.137 4.137 26 H 0.101 0.899 27 C -0.193 4.193 28 C -0.007 4.007 29 C -0.102 4.102 30 C -0.117 4.117 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.176 0.824 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.199 0.801 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 13.170 -2.788 -3.058 13.805 hybrid contribution -0.902 0.103 1.396 1.665 sum 12.269 -2.685 -1.662 12.668 Atomic orbital electron populations 1.20982 0.88314 1.04253 1.04594 1.20478 0.97433 0.91820 0.91119 1.21786 0.95463 0.99063 1.05046 1.22971 0.91607 0.96359 0.91752 1.68052 1.39897 0.97708 1.14303 1.19039 0.89723 0.92544 0.96156 1.20632 1.00327 0.89730 1.02073 1.20850 0.92705 0.98503 0.95083 1.19859 0.94284 0.92833 1.06722 1.17901 0.80498 0.88667 0.76746 1.90740 1.64709 1.36255 1.50920 1.48374 1.05428 1.09251 1.70989 1.23745 0.92670 0.88902 1.01293 1.21278 0.89022 0.88122 0.94681 0.90427 1.42728 1.58918 1.30780 1.05260 1.19030 1.23708 1.00374 0.95438 0.88894 1.24639 0.99152 0.97066 0.97300 1.69686 1.36111 1.17323 1.34002 0.86668 0.77498 0.78014 0.87044 1.20986 1.21594 1.20189 1.22717 0.94140 0.96580 1.00264 0.89878 1.21627 0.97948 0.97974 1.01731 1.22342 0.91166 0.86906 1.00331 1.23366 1.03672 0.90443 0.92734 1.18747 0.93969 0.94217 1.04788 0.88906 0.90226 0.90317 0.84291 0.82437 0.84374 0.84257 0.89794 0.90966 0.80149 0.92835 0.92420 0.92939 0.91391 0.91103 0.90613 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.59 36.01 0.35 -1.30 16 2 C 0.00 -0.01 5.92 -104.22 -0.62 -0.62 16 3 C -0.19 -2.19 9.72 -39.78 -0.39 -2.58 16 4 C 0.14 1.64 11.14 -17.46 -0.19 1.44 16 5 N -0.49 -6.80 10.33 -10.92 -0.11 -6.91 16 6 C 0.15 2.14 6.61 -84.77 -0.56 1.58 16 7 C -0.11 -1.44 9.95 -39.53 -0.39 -1.83 16 8 C -0.05 -0.70 9.48 -39.59 -0.38 -1.07 16 9 C -0.13 -2.01 5.87 -104.98 -0.62 -2.63 16 10 C 0.57 9.30 7.80 -12.36 -0.10 9.20 16 11 O -0.55 -10.08 16.64 5.32 0.09 -9.99 16 12 N -0.61 -9.09 3.32 -177.05 -0.59 -9.68 16 13 C 0.06 0.89 4.62 -3.06 -0.01 0.88 16 14 C 0.18 2.90 3.06 -66.09 -0.20 2.69 16 15 H 0.08 1.27 8.02 -51.93 -0.42 0.85 16 16 N -0.74 -14.64 4.98 -51.65 -0.26 -14.90 16 17 C -0.26 -6.17 10.46 -15.06 -0.16 -6.33 16 18 H 0.09 2.40 8.06 -52.49 -0.42 1.97 16 19 C 0.02 0.40 5.50 -17.43 -0.10 0.31 16 20 N -0.93 -26.15 13.97 55.49 0.78 -25.38 16 21 Si 0.88 20.03 27.74 -169.99 -4.71 15.32 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -5.92 6.52 56.52 0.37 -5.56 16 25 C -0.12 -1.59 3.26 -88.35 -0.29 -1.88 16 26 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 27 C -0.14 -1.62 9.31 37.16 0.35 -1.28 16 28 C 0.12 1.54 6.36 -2.40 -0.02 1.52 16 29 C -0.08 -1.22 7.89 -38.74 -0.31 -1.53 16 30 C -0.12 -1.67 5.74 -106.82 -0.61 -2.29 16 31 H 0.09 1.33 8.14 -51.92 -0.42 0.90 16 32 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.08 1.07 6.51 -51.93 -0.34 0.73 16 34 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.14 1.76 7.63 -52.49 -0.40 1.36 16 38 H 0.08 1.34 6.55 -51.93 -0.34 1.00 16 39 H 0.07 1.04 6.79 -51.93 -0.35 0.69 16 40 H 0.36 7.34 5.57 -40.82 -0.23 7.11 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 42 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 46 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 47 H 0.18 2.56 1.10 -59.63 -0.07 2.49 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -30.17 377.39 -9.72 -39.89 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.36 Total: 11.67 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -4.24 Total: -5.71 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.18 Total: -56.87 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.71 Total: 15.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.17 -9.72 -39.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054679643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.690 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds