Wall clock time and date at job start Tue Mar 31 2020 22:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36609 * 120.91738 * 2 1 4 4 C 1.39278 * 119.90279 * 180.02562 * 3 2 1 5 5 N 1.31139 * 121.77271 * 0.02562 * 4 3 2 6 6 C 1.33620 * 121.39123 * 0.02562 * 5 4 3 7 7 C 1.40773 * 120.83322 * 180.02562 * 6 5 4 8 8 C 1.35695 * 120.11060 * 179.97438 * 7 6 5 9 9 C 1.40639 * 120.92461 * 359.97438 * 8 7 6 10 10 C 1.47771 * 119.79715 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00005 * 351.91946 * 10 9 8 12 12 N 1.34774 * 119.99406 * 171.92587 * 10 9 8 13 13 C 1.47021 * 125.65353 * 5.38458 * 12 10 9 14 14 C 1.54327 * 107.27121 * 181.02304 * 13 12 10 15 15 H 1.08996 * 110.72037 * 263.83492 * 14 13 12 16 16 N 1.46500 * 110.71525 * 140.55901 * 14 13 12 17 17 C 1.36934 * 120.00219 * 86.45756 * 16 14 13 18 18 H 1.08001 * 119.99828 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00120 * 179.97438 * 17 16 14 20 20 N 1.31625 * 120.00004 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00068 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47340 * 89.99954 * 21 19 17 23 23 H 1.48505 * 109.47009 * 209.99972 * 21 19 17 24 24 H 1.48497 * 109.46961 * 329.99822 * 21 19 17 25 25 C 1.55156 * 102.94075 * 22.20034 * 14 13 12 26 26 H 1.08998 * 111.01067 * 82.60781 * 25 14 13 27 27 C 1.53004 * 111.00201 * 206.42380 * 25 14 13 28 28 C 1.47428 * 125.64206 * 185.08220 * 12 10 9 29 29 C 1.38544 * 120.39690 * 359.97438 * 9 8 7 30 30 C 1.40181 * 119.40170 * 0.02562 * 29 9 8 31 31 H 1.09008 * 109.46995 * 269.97416 * 1 2 3 32 32 H 1.08994 * 109.47555 * 29.97134 * 1 2 3 33 33 H 1.08999 * 109.47151 * 149.98004 * 1 2 3 34 34 H 1.08003 * 120.05025 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.10865 * 179.97438 * 4 3 2 36 36 H 1.07994 * 119.94159 * 0.24404 * 7 6 5 37 37 H 1.07999 * 119.53386 * 179.97438 * 8 7 6 38 38 H 1.08995 * 109.88225 * 300.44261 * 13 12 10 39 39 H 1.09001 * 109.87716 * 61.60724 * 13 12 10 40 40 H 0.97000 * 119.99751 * 266.45545 * 16 14 13 41 41 H 0.96994 * 119.99985 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.47122 * 59.99406 * 27 25 14 43 43 H 1.08997 * 109.47274 * 179.97438 * 27 25 14 44 44 H 1.08997 * 109.46665 * 299.99576 * 27 25 14 45 45 H 1.08994 * 110.36833 * 274.74268 * 28 12 10 46 46 H 1.09000 * 110.36871 * 37.06668 * 28 12 10 47 47 H 1.08004 * 120.29399 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2722 0.0204 -0.0016 6 6 3.6479 -1.1610 -0.0026 7 6 4.3796 -2.3637 -0.0032 8 6 3.7306 -3.5554 -0.0037 9 6 2.3254 -3.6131 -0.0033 10 6 1.6443 -4.9244 -0.0045 11 8 2.2890 -5.9440 -0.1538 12 7 0.3082 -4.9899 0.1599 13 6 -0.6030 -3.8387 0.2383 14 6 -2.0263 -4.3949 0.4537 15 1 -2.5581 -4.4714 -0.4947 16 7 -2.7705 -3.5613 1.4011 17 6 -3.4555 -2.4627 0.9553 18 1 -3.4469 -2.2104 -0.0948 19 6 -4.1611 -1.6732 1.8529 20 7 -4.8191 -0.6169 1.4244 21 14 -4.1755 -2.1091 3.6693 22 1 -3.0414 -1.4337 4.3495 23 1 -5.4546 -1.6604 4.2758 24 1 -4.0422 -3.5797 3.8264 25 6 -1.7627 -5.8026 1.0505 26 1 -1.5798 -5.7443 2.1234 27 6 -2.9222 -6.7533 0.7458 28 6 -0.4824 -6.2280 0.2846 29 6 1.5759 -2.4478 -0.0017 30 6 2.2308 -1.2084 -0.0011 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5133 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6848 2.1163 0.0004 35 1 4.1435 2.0815 -0.0010 36 1 5.4592 -2.3378 0.0013 37 1 4.3012 -4.4723 -0.0046 38 1 -0.3233 -3.2011 1.0769 39 1 -0.5635 -3.2709 -0.6912 40 1 -2.7780 -3.7877 2.3443 41 1 -5.3124 -0.0655 2.0516 42 1 -3.0406 -6.8478 -0.3336 43 1 -2.7114 -7.7328 1.1749 44 1 -3.8406 -6.3566 1.1786 45 1 -0.7385 -6.6155 -0.7014 46 1 0.0698 -6.9749 0.8550 47 1 0.4969 -2.4941 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054679643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:55 Heat of formation + Delta-G solvation = 39.591989 kcal Electronic energy + Delta-G solvation = -29787.818386 eV Core-core repulsion = 25935.767452 eV Total energy + Delta-G solvation = -3852.050934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.24420 -41.16150 -39.19893 -37.75437 -36.05853 -35.73708 -34.15439 -32.98235 -31.75144 -31.43507 -29.68785 -28.93315 -27.48219 -26.19963 -25.07959 -24.55713 -23.07296 -22.10804 -21.58697 -21.26240 -19.48551 -19.30720 -18.46481 -17.76602 -17.47368 -16.96341 -16.52628 -16.45417 -15.91964 -15.62265 -15.54313 -15.28659 -14.95863 -14.88467 -14.56872 -14.43918 -14.23406 -14.07390 -13.97928 -13.80107 -13.57005 -13.34151 -13.16611 -12.97669 -12.94892 -12.75149 -12.67766 -12.39038 -12.17319 -11.98984 -11.92596 -11.76196 -11.46295 -11.22757 -11.21602 -10.92334 -10.49197 -9.97610 -9.72109 -9.33472 -9.30819 -7.96970 -5.31678 -0.87602 -0.38158 0.79429 1.31952 1.42050 1.42984 1.49919 1.80495 2.18207 2.51397 3.01227 3.13384 3.29557 3.31090 3.43256 3.56805 3.58350 3.66679 3.71027 3.79794 3.99326 4.02332 4.11205 4.21880 4.26983 4.32840 4.45027 4.46918 4.51539 4.63712 4.68815 4.73636 4.76270 4.78176 4.83857 4.84724 5.00220 5.02592 5.07828 5.10513 5.17651 5.25616 5.28644 5.31599 5.47251 5.48718 5.73902 5.83230 6.25083 6.31636 6.84055 6.93579 7.10650 7.84466 8.02880 9.22964 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009086 B = 0.004753 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.028231 B = 5889.989964 C = 8445.376755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.018 4.018 3 C -0.183 4.183 4 C 0.149 3.851 5 N -0.508 5.508 6 C 0.130 3.870 7 C -0.105 4.105 8 C -0.056 4.056 9 C -0.148 4.148 10 C 0.570 3.430 11 O -0.572 6.572 12 N -0.607 5.607 13 C 0.071 3.929 14 C 0.175 3.825 15 H 0.077 0.923 16 N -0.736 5.736 17 C -0.225 4.225 18 H 0.070 0.930 19 C -0.045 4.045 20 N -0.973 5.973 21 Si 0.933 3.067 22 H -0.284 1.284 23 H -0.303 1.303 24 H -0.252 1.252 25 C -0.106 4.106 26 H 0.082 0.918 27 C -0.131 4.131 28 C 0.115 3.885 29 C -0.086 4.086 30 C -0.131 4.131 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.169 0.831 35 H 0.198 0.802 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.367 0.633 41 H 0.256 0.744 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.299 -2.672 -2.531 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.025 4.025 3 C -0.203 4.203 4 C -0.022 4.022 5 N -0.217 5.217 6 C 0.009 3.991 7 C -0.123 4.123 8 C -0.077 4.077 9 C -0.151 4.151 10 C 0.361 3.639 11 O -0.453 6.453 12 N -0.338 5.338 13 C -0.054 4.054 14 C 0.065 3.935 15 H 0.095 0.905 16 N -0.378 5.378 17 C -0.355 4.355 18 H 0.088 0.912 19 C -0.238 4.238 20 N -0.623 5.623 21 Si 0.762 3.238 22 H -0.211 1.211 23 H -0.230 1.230 24 H -0.177 1.177 25 C -0.126 4.126 26 H 0.100 0.900 27 C -0.189 4.189 28 C -0.007 4.007 29 C -0.105 4.105 30 C -0.133 4.133 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.187 0.813 35 H 0.215 0.785 36 H 0.176 0.824 37 H 0.165 0.835 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.201 0.799 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 14.513 -3.167 -2.758 15.108 hybrid contribution -1.241 0.271 1.200 1.748 sum 13.271 -2.896 -1.558 13.673 Atomic orbital electron populations 1.20894 0.88745 1.04391 1.03573 1.20551 0.97259 0.92334 0.92400 1.22168 0.95736 0.99523 1.02831 1.23669 0.91901 0.97058 0.89580 1.68119 1.40349 0.98080 1.15176 1.19290 0.89821 0.93415 0.96548 1.20848 1.01265 0.89170 1.01058 1.20935 0.92234 0.99108 0.95378 1.19898 0.94979 0.92342 1.07884 1.18085 0.80667 0.88800 0.76317 1.90718 1.65177 1.37089 1.52356 1.48394 1.05257 1.09728 1.70429 1.23489 0.91924 0.88797 1.01227 1.21442 0.88789 0.89202 0.94104 0.90518 1.42677 1.58988 1.30189 1.05984 1.18978 1.21820 1.00494 0.94234 0.91183 1.25229 1.00036 0.97492 1.01023 1.69836 1.38323 1.19103 1.35057 0.85745 0.76525 0.79007 0.82510 1.21060 1.23037 1.17704 1.22649 0.94879 0.94987 1.00038 0.89953 1.21610 0.96346 0.98471 1.02467 1.22466 0.90677 0.86368 1.01169 1.23310 1.03479 0.90669 0.93010 1.18909 0.94427 0.94575 1.05425 0.90498 0.88914 0.91423 0.81338 0.78496 0.82421 0.83517 0.90686 0.90567 0.79941 0.93517 0.91521 0.90722 0.92815 0.89727 0.90067 0.80696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.59 71.24 0.68 -2.48 16 2 C -0.02 -0.45 5.92 -19.60 -0.12 -0.57 16 3 C -0.18 -3.70 9.72 22.14 0.22 -3.49 16 4 C 0.15 2.94 11.14 85.05 0.95 3.89 16 5 N -0.51 -13.08 10.33 -188.45 -1.95 -15.03 16 6 C 0.13 3.67 6.61 40.37 0.27 3.94 16 7 C -0.11 -2.68 9.95 22.30 0.22 -2.46 16 8 C -0.06 -1.51 9.48 22.27 0.21 -1.30 16 9 C -0.15 -4.44 5.87 -20.10 -0.12 -4.56 16 10 C 0.57 18.34 7.80 86.77 0.68 19.01 16 11 O -0.57 -20.80 16.64 -3.89 -0.06 -20.87 16 12 N -0.61 -17.65 3.32 -832.33 -2.77 -20.42 16 13 C 0.07 2.10 4.62 86.73 0.40 2.50 16 14 C 0.17 5.43 3.06 46.18 0.14 5.58 16 15 H 0.08 2.44 8.02 -2.39 -0.02 2.42 16 16 N -0.74 -28.76 4.98 -317.33 -1.58 -30.34 16 17 C -0.22 -10.88 10.46 84.03 0.88 -10.00 16 18 H 0.07 3.69 8.06 -2.91 -0.02 3.67 16 19 C -0.05 -2.37 5.50 84.86 0.47 -1.90 16 20 N -0.97 -56.43 13.97 21.65 0.30 -56.13 16 21 Si 0.93 41.34 27.74 68.60 1.90 43.24 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.25 -10.05 6.52 99.48 0.65 -9.40 16 25 C -0.11 -2.66 3.26 -9.32 -0.03 -2.69 16 26 H 0.08 2.13 8.00 -2.39 -0.02 2.11 16 27 C -0.13 -2.83 9.31 71.98 0.67 -2.16 16 28 C 0.12 2.86 6.36 86.93 0.55 3.42 16 29 C -0.09 -2.53 7.89 22.81 0.18 -2.35 16 30 C -0.13 -3.77 5.74 -21.29 -0.12 -3.90 16 31 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.09 2.14 8.10 -2.39 -0.02 2.12 16 33 H 0.07 1.89 6.51 -2.39 -0.02 1.88 16 34 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.15 3.65 7.63 -2.91 -0.02 3.63 16 38 H 0.08 2.41 6.55 -2.39 -0.02 2.39 16 39 H 0.08 2.22 6.79 -2.39 -0.02 2.20 16 40 H 0.37 14.18 5.57 -92.71 -0.52 13.66 16 41 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 42 H 0.07 1.32 8.07 -2.39 -0.02 1.30 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.91 7.99 -2.39 -0.02 1.89 16 46 H 0.08 1.99 8.09 -2.39 -0.02 1.97 16 47 H 0.18 5.12 1.10 -9.62 -0.01 5.11 16 Total: -1.00 -65.44 377.39 2.40 -63.05 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.43 Total: 36.03 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 6.13 Total: 0.47 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -5.99 Total: -121.91 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.06 Total: -20.87 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.90 Total: 43.24 kcal Total: -65.44 2.40 -63.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054679643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.637 kcal (2) G-P(sol) polarization free energy of solvation -65.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds