Wall clock time and date at job start Tue Mar 31 2020 22:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36614 * 120.92024 * 2 1 4 4 C 1.39270 * 119.90473 * 180.02562 * 3 2 1 5 5 N 1.31146 * 121.76754 * 0.02562 * 4 3 2 6 6 C 1.33616 * 121.39867 * 359.97438 * 5 4 3 7 7 C 1.40762 * 120.83831 * 180.02562 * 6 5 4 8 8 C 1.35694 * 120.11186 * 179.67159 * 7 6 5 9 9 C 1.40631 * 120.92659 * 0.56590 * 8 7 6 10 10 C 1.47764 * 119.80150 * 179.72763 * 9 8 7 11 11 O 1.21564 * 120.00148 * 351.67012 * 10 9 8 12 12 N 1.34781 * 119.99707 * 171.93715 * 10 9 8 13 13 C 1.47426 * 125.64600 * 184.92139 * 12 10 9 14 14 C 1.55134 * 104.72133 * 155.81806 * 13 12 10 15 15 H 1.08995 * 111.19156 * 279.19490 * 14 13 12 16 16 C 1.52999 * 110.93708 * 155.28662 * 14 13 12 17 17 C 1.55157 * 101.48098 * 37.29856 * 14 13 12 18 18 H 1.09004 * 110.72071 * 205.96289 * 17 14 13 19 19 N 1.46499 * 110.87370 * 82.76795 * 17 14 13 20 20 C 1.36938 * 120.00161 * 159.93433 * 19 17 14 21 21 H 1.07996 * 119.99964 * 359.97438 * 20 19 17 22 22 C 1.38818 * 119.99740 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00291 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99741 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47116 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47294 * 119.99877 * 24 22 20 27 27 H 1.48504 * 109.47036 * 240.00349 * 24 22 20 28 28 C 1.47016 * 125.64982 * 5.23740 * 12 10 9 29 29 C 1.38550 * 120.39503 * 359.45118 * 9 8 7 30 30 C 1.40190 * 119.40058 * 0.25743 * 29 9 8 31 31 H 1.08996 * 109.46916 * 269.99787 * 1 2 3 32 32 H 1.09006 * 109.46922 * 29.99544 * 1 2 3 33 33 H 1.08995 * 109.47215 * 149.99720 * 1 2 3 34 34 H 1.07994 * 120.04833 * 0.02562 * 3 2 1 35 35 H 1.07994 * 119.11501 * 180.02562 * 4 3 2 36 36 H 1.07999 * 119.94346 * 359.97438 * 7 6 5 37 37 H 1.08006 * 119.53396 * 180.29591 * 8 7 6 38 38 H 1.08993 * 110.37097 * 274.75297 * 13 12 10 39 39 H 1.09005 * 110.36648 * 37.07842 * 13 12 10 40 40 H 1.08998 * 109.47558 * 307.96443 * 16 14 13 41 41 H 1.09003 * 109.46738 * 67.96709 * 16 14 13 42 42 H 1.08999 * 109.47038 * 187.95737 * 16 14 13 43 43 H 0.97001 * 119.99854 * 339.92887 * 19 17 14 44 44 H 0.97002 * 119.99591 * 180.02562 * 23 22 20 45 45 H 1.09001 * 109.88029 * 300.43177 * 28 12 10 46 46 H 1.08995 * 109.88789 * 61.59859 * 28 12 10 47 47 H 1.08000 * 120.29843 * 180.23188 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2091 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0016 6 6 3.6479 -1.1612 -0.0016 7 6 4.3795 -2.3637 -0.0022 8 6 3.7304 -3.5554 0.0045 9 6 2.3253 -3.6131 0.0002 10 6 1.6442 -4.9244 0.0015 11 8 2.2889 -5.9444 -0.1462 12 7 0.3074 -4.9892 0.1611 13 6 -0.4841 -6.2268 0.2844 14 6 -1.7671 -5.8001 1.0449 15 1 -1.5874 -5.7404 2.1183 16 6 -2.9263 -6.7504 0.7378 17 6 -2.0279 -4.3930 0.4455 18 1 -2.5841 -3.7717 1.1475 19 7 -2.7394 -4.4931 -0.8312 20 6 -3.4217 -3.4118 -1.3215 21 1 -3.4356 -2.4853 -0.7669 22 6 -4.0954 -3.5066 -2.5315 23 7 -4.0781 -4.6357 -3.2078 24 14 -5.0255 -2.0313 -3.2007 25 1 -4.8903 -0.8917 -2.2581 26 1 -4.4651 -1.6506 -4.5221 27 1 -6.4612 -2.3790 -3.3535 28 6 -0.6036 -3.8377 0.2346 29 6 1.5758 -2.4478 0.0003 30 6 2.2308 -1.2083 -0.0006 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8901 -0.5138 33 1 -0.3633 -0.8899 -0.5138 34 1 1.6850 2.1162 0.0004 35 1 4.1436 2.0813 -0.0001 36 1 5.4592 -2.3379 -0.0030 37 1 4.3011 -4.4724 0.0089 38 1 -0.7366 -6.6155 -0.7021 39 1 0.0656 -6.9732 0.8578 40 1 -3.0413 -6.8463 -0.3418 41 1 -2.7176 -7.7293 1.1695 42 1 -3.8457 -6.3526 1.1673 43 1 -2.7272 -5.3254 -1.3293 44 1 -4.5486 -4.7017 -4.0534 45 1 -0.3268 -3.1990 1.0734 46 1 -0.5605 -3.2709 -0.6954 47 1 0.4968 -2.4940 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054679650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:03 Heat of formation + Delta-G solvation = 56.440782 kcal Electronic energy + Delta-G solvation = -29736.856013 eV Core-core repulsion = 25885.535698 eV Total energy + Delta-G solvation = -3851.320315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.18370 -39.91991 -37.87204 -36.63509 -34.90223 -34.06199 -32.66969 -30.88195 -30.70264 -30.23918 -28.13450 -27.94725 -26.26335 -24.78353 -23.82052 -23.53630 -22.31334 -21.08594 -20.04898 -19.38801 -18.29266 -17.64674 -17.18875 -16.60528 -16.04121 -15.77242 -15.32074 -14.79372 -14.66978 -14.45258 -14.33916 -14.12894 -13.78424 -13.54383 -13.35257 -13.15307 -13.07754 -12.85090 -12.80038 -12.56980 -12.16550 -12.08150 -11.78550 -11.67648 -11.57852 -11.38110 -11.19757 -11.01394 -10.78000 -10.49726 -10.30931 -10.28325 -10.01044 -9.83883 -9.74549 -9.55323 -9.07687 -8.91310 -8.37780 -8.29113 -7.16554 -5.93294 -3.24085 0.14079 0.60840 1.81305 2.41524 3.16998 3.32260 3.36436 3.37202 3.41019 4.02681 4.13990 4.37829 4.43552 4.48064 4.53150 4.64125 4.86213 4.96674 5.05990 5.06897 5.18708 5.25285 5.28993 5.34765 5.37236 5.46225 5.52789 5.59111 5.65113 5.73623 5.77498 5.82626 5.88826 5.95590 5.98726 6.06380 6.10706 6.18578 6.23311 6.25475 6.27355 6.39294 6.42847 6.52337 6.61456 6.70741 6.84695 7.53807 7.73373 7.77097 8.23983 8.32188 9.36456 9.90453 10.25086 11.28618 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009591 B = 0.004261 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.730300 B = 6570.283022 C = 8742.021469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.006 4.006 3 C -0.192 4.192 4 C 0.141 3.859 5 N -0.487 5.487 6 C 0.145 3.855 7 C -0.109 4.109 8 C -0.050 4.050 9 C -0.125 4.125 10 C 0.568 3.432 11 O -0.548 6.548 12 N -0.599 5.599 13 C 0.115 3.885 14 C -0.114 4.114 15 H 0.080 0.920 16 C -0.131 4.131 17 C 0.171 3.829 18 H 0.073 0.927 19 N -0.711 5.711 20 C -0.251 4.251 21 H 0.073 0.927 22 C -0.005 4.005 23 N -0.926 5.926 24 Si 0.905 3.095 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.056 3.944 29 C -0.089 4.089 30 C -0.113 4.113 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.388 0.612 44 H 0.257 0.743 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.216 7.424 10.012 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.014 4.014 3 C -0.212 4.212 4 C -0.030 4.030 5 N -0.196 5.196 6 C 0.024 3.976 7 C -0.127 4.127 8 C -0.070 4.070 9 C -0.128 4.128 10 C 0.358 3.642 11 O -0.427 6.427 12 N -0.331 5.331 13 C -0.007 4.007 14 C -0.134 4.134 15 H 0.099 0.901 16 C -0.189 4.189 17 C 0.058 3.942 18 H 0.091 0.909 19 N -0.352 5.352 20 C -0.382 4.382 21 H 0.091 0.909 22 C -0.202 4.202 23 N -0.573 5.573 24 Si 0.735 3.265 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.069 4.069 29 C -0.107 4.107 30 C -0.115 4.115 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.224 0.776 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 11.437 6.925 9.857 16.611 hybrid contribution -1.284 0.767 -0.757 1.677 sum 10.153 7.692 9.100 15.654 Atomic orbital electron populations 1.21013 0.89326 1.04689 1.03582 1.20331 0.97001 0.91952 0.92128 1.21749 0.95550 0.98855 1.05000 1.22954 0.91563 0.96390 0.92137 1.68046 1.39948 0.97727 1.13836 1.19028 0.89725 0.92505 0.96350 1.20640 1.00367 0.89710 1.01997 1.20890 0.92789 0.98564 0.94805 1.19921 0.94265 0.93040 1.05599 1.17859 0.80676 0.88565 0.77084 1.90744 1.64844 1.36176 1.50965 1.48287 1.05127 1.09266 1.70389 1.22360 0.91037 0.86543 1.00731 1.22664 0.94530 0.97076 0.99108 0.90135 1.21546 0.97079 0.97116 1.03150 1.21265 0.89307 0.93516 0.90105 0.90942 1.42470 1.58689 1.14356 1.19696 1.19237 1.24552 0.91910 1.02492 0.90885 1.24752 1.00791 0.97057 0.97605 1.69659 1.46878 1.24685 1.16042 0.86174 0.79594 0.81897 0.78787 1.20425 1.21823 1.21759 1.23788 0.93235 0.89051 1.00845 1.23334 1.03611 0.90394 0.93345 1.18734 0.93999 0.94155 1.04601 0.89722 0.90205 0.89882 0.84437 0.82451 0.84326 0.84146 0.90897 0.91035 0.91158 0.93558 0.92017 0.77630 0.93315 0.91787 0.89509 0.80459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 9.59 36.01 0.35 -0.98 16 2 C -0.01 -0.07 5.92 -104.22 -0.62 -0.69 16 3 C -0.19 -1.90 9.72 -39.78 -0.39 -2.28 16 4 C 0.14 1.47 11.14 -17.46 -0.19 1.28 16 5 N -0.49 -6.46 10.33 -10.92 -0.11 -6.57 16 6 C 0.15 2.05 6.61 -84.78 -0.56 1.49 16 7 C -0.11 -1.43 9.95 -39.54 -0.39 -1.82 16 8 C -0.05 -0.70 9.48 -39.59 -0.38 -1.08 16 9 C -0.13 -1.94 5.87 -104.99 -0.62 -2.56 16 10 C 0.57 9.99 7.80 -12.36 -0.10 9.89 16 11 O -0.55 -10.96 16.64 5.31 0.09 -10.87 16 12 N -0.60 -9.92 3.32 -177.29 -0.59 -10.51 16 13 C 0.12 1.83 6.34 -2.41 -0.02 1.82 16 14 C -0.11 -1.65 3.53 -88.35 -0.31 -1.97 16 15 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.13 -1.93 8.85 37.16 0.33 -1.60 16 17 C 0.17 2.86 3.36 -66.10 -0.22 2.63 16 18 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 19 N -0.71 -15.38 4.62 -51.65 -0.24 -15.62 16 20 C -0.25 -6.11 9.98 -15.06 -0.15 -6.26 16 21 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 22 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 23 N -0.93 -26.01 13.06 55.49 0.72 -25.29 16 24 Si 0.90 20.68 29.55 -169.99 -5.02 15.66 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.06 0.88 4.61 -3.07 -0.01 0.86 16 29 C -0.09 -1.27 7.89 -38.73 -0.31 -1.57 16 30 C -0.11 -1.56 5.74 -106.82 -0.61 -2.17 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.08 0.96 6.51 -51.93 -0.34 0.62 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.14 1.85 7.64 -52.48 -0.40 1.44 16 38 H 0.07 1.28 7.99 -51.93 -0.41 0.86 16 39 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 40 H 0.07 1.21 6.39 -51.93 -0.33 0.88 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.39 9.17 6.12 -40.82 -0.25 8.92 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.06 0.84 6.66 -51.93 -0.35 0.50 16 46 H 0.09 1.51 6.70 -51.93 -0.35 1.16 16 47 H 0.18 2.46 1.10 -59.92 -0.07 2.39 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -30.85 377.01 -10.03 -40.87 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.26 Total: 11.86 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -4.29 Total: -5.22 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.22 Total: -57.99 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.85 -10.03 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054679650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.316 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds