Wall clock time and date at job start Tue Mar 31 2020 22:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36614 * 120.92024 * 2 1 4 4 C 1.39270 * 119.90473 * 180.02562 * 3 2 1 5 5 N 1.31146 * 121.76754 * 0.02562 * 4 3 2 6 6 C 1.33616 * 121.39867 * 359.97438 * 5 4 3 7 7 C 1.40762 * 120.83831 * 180.02562 * 6 5 4 8 8 C 1.35694 * 120.11186 * 179.67159 * 7 6 5 9 9 C 1.40631 * 120.92659 * 0.56590 * 8 7 6 10 10 C 1.47764 * 119.80150 * 179.72763 * 9 8 7 11 11 O 1.21564 * 120.00148 * 351.67012 * 10 9 8 12 12 N 1.34781 * 119.99707 * 171.93715 * 10 9 8 13 13 C 1.47426 * 125.64600 * 184.92139 * 12 10 9 14 14 C 1.55134 * 104.72133 * 155.81806 * 13 12 10 15 15 H 1.08995 * 111.19156 * 279.19490 * 14 13 12 16 16 C 1.52999 * 110.93708 * 155.28662 * 14 13 12 17 17 C 1.55157 * 101.48098 * 37.29856 * 14 13 12 18 18 H 1.09004 * 110.72071 * 205.96289 * 17 14 13 19 19 N 1.46499 * 110.87370 * 82.76795 * 17 14 13 20 20 C 1.36938 * 120.00161 * 159.93433 * 19 17 14 21 21 H 1.07996 * 119.99964 * 359.97438 * 20 19 17 22 22 C 1.38818 * 119.99740 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00291 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99741 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47116 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47294 * 119.99877 * 24 22 20 27 27 H 1.48504 * 109.47036 * 240.00349 * 24 22 20 28 28 C 1.47016 * 125.64982 * 5.23740 * 12 10 9 29 29 C 1.38550 * 120.39503 * 359.45118 * 9 8 7 30 30 C 1.40190 * 119.40058 * 0.25743 * 29 9 8 31 31 H 1.08996 * 109.46916 * 269.99787 * 1 2 3 32 32 H 1.09006 * 109.46922 * 29.99544 * 1 2 3 33 33 H 1.08995 * 109.47215 * 149.99720 * 1 2 3 34 34 H 1.07994 * 120.04833 * 0.02562 * 3 2 1 35 35 H 1.07994 * 119.11501 * 180.02562 * 4 3 2 36 36 H 1.07999 * 119.94346 * 359.97438 * 7 6 5 37 37 H 1.08006 * 119.53396 * 180.29591 * 8 7 6 38 38 H 1.08993 * 110.37097 * 274.75297 * 13 12 10 39 39 H 1.09005 * 110.36648 * 37.07842 * 13 12 10 40 40 H 1.08998 * 109.47558 * 307.96443 * 16 14 13 41 41 H 1.09003 * 109.46738 * 67.96709 * 16 14 13 42 42 H 1.08999 * 109.47038 * 187.95737 * 16 14 13 43 43 H 0.97001 * 119.99854 * 339.92887 * 19 17 14 44 44 H 0.97002 * 119.99591 * 180.02562 * 23 22 20 45 45 H 1.09001 * 109.88029 * 300.43177 * 28 12 10 46 46 H 1.08995 * 109.88789 * 61.59859 * 28 12 10 47 47 H 1.08000 * 120.29843 * 180.23188 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2091 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0016 6 6 3.6479 -1.1612 -0.0016 7 6 4.3795 -2.3637 -0.0022 8 6 3.7304 -3.5554 0.0045 9 6 2.3253 -3.6131 0.0002 10 6 1.6442 -4.9244 0.0015 11 8 2.2889 -5.9444 -0.1462 12 7 0.3074 -4.9892 0.1611 13 6 -0.4841 -6.2268 0.2844 14 6 -1.7671 -5.8001 1.0449 15 1 -1.5874 -5.7404 2.1183 16 6 -2.9263 -6.7504 0.7378 17 6 -2.0279 -4.3930 0.4455 18 1 -2.5841 -3.7717 1.1475 19 7 -2.7394 -4.4931 -0.8312 20 6 -3.4217 -3.4118 -1.3215 21 1 -3.4356 -2.4853 -0.7669 22 6 -4.0954 -3.5066 -2.5315 23 7 -4.0781 -4.6357 -3.2078 24 14 -5.0255 -2.0313 -3.2007 25 1 -4.8903 -0.8917 -2.2581 26 1 -4.4651 -1.6506 -4.5221 27 1 -6.4612 -2.3790 -3.3535 28 6 -0.6036 -3.8377 0.2346 29 6 1.5758 -2.4478 0.0003 30 6 2.2308 -1.2083 -0.0006 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8901 -0.5138 33 1 -0.3633 -0.8899 -0.5138 34 1 1.6850 2.1162 0.0004 35 1 4.1436 2.0813 -0.0001 36 1 5.4592 -2.3379 -0.0030 37 1 4.3011 -4.4724 0.0089 38 1 -0.7366 -6.6155 -0.7021 39 1 0.0656 -6.9732 0.8578 40 1 -3.0413 -6.8463 -0.3418 41 1 -2.7176 -7.7293 1.1695 42 1 -3.8457 -6.3526 1.1673 43 1 -2.7272 -5.3254 -1.3293 44 1 -4.5486 -4.7017 -4.0534 45 1 -0.3268 -3.1990 1.0734 46 1 -0.5605 -3.2709 -0.6954 47 1 0.4968 -2.4940 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054679650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:01 Heat of formation + Delta-G solvation = 38.603913 kcal Electronic energy + Delta-G solvation = -29737.629478 eV Core-core repulsion = 25885.535698 eV Total energy + Delta-G solvation = -3852.093780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.22111 -41.13904 -39.20301 -37.73371 -35.93799 -35.59382 -34.08776 -32.41472 -31.71872 -31.37550 -29.55012 -28.90017 -27.46303 -26.14457 -25.33125 -24.53086 -23.59105 -22.07642 -21.25501 -20.73378 -19.52087 -19.14488 -18.38332 -17.73289 -17.26598 -16.95887 -16.55148 -16.32942 -15.89899 -15.60319 -15.54518 -15.38397 -15.10512 -14.76143 -14.47439 -14.33590 -14.23671 -13.94278 -13.92040 -13.54440 -13.40228 -13.23098 -13.09943 -12.87771 -12.83037 -12.73868 -12.65519 -12.37240 -12.27139 -12.03270 -11.83982 -11.45823 -11.36907 -11.19789 -11.19197 -10.91148 -10.45750 -9.95503 -9.68723 -9.29419 -8.98918 -7.89592 -5.17899 -0.84989 -0.36521 0.82284 1.33874 1.51396 1.52662 1.61353 1.88113 2.20392 2.59770 3.03092 3.19581 3.34944 3.39635 3.46376 3.61361 3.70977 3.76322 3.85789 3.88129 4.01008 4.03597 4.08991 4.28538 4.35903 4.44465 4.50204 4.51234 4.60070 4.66264 4.73265 4.75702 4.80392 4.81776 4.85227 4.92294 4.99679 5.01584 5.12159 5.16492 5.19694 5.27897 5.31872 5.33349 5.50059 5.56980 5.62329 5.76340 6.31091 6.40212 6.87383 6.96978 7.39502 8.12948 8.35609 9.34007 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009591 B = 0.004261 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.730300 B = 6570.283022 C = 8742.021469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.018 4.018 3 C -0.181 4.181 4 C 0.146 3.854 5 N -0.511 5.511 6 C 0.129 3.871 7 C -0.106 4.106 8 C -0.059 4.059 9 C -0.147 4.147 10 C 0.564 3.436 11 O -0.582 6.582 12 N -0.601 5.601 13 C 0.113 3.887 14 C -0.099 4.099 15 H 0.113 0.887 16 C -0.125 4.125 17 C 0.163 3.837 18 H 0.092 0.908 19 N -0.723 5.723 20 C -0.231 4.231 21 H 0.090 0.910 22 C -0.072 4.072 23 N -0.970 5.970 24 Si 0.961 3.039 25 H -0.255 1.255 26 H -0.304 1.304 27 H -0.302 1.302 28 C 0.067 3.933 29 C -0.083 4.083 30 C -0.131 4.131 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.175 0.825 35 H 0.196 0.804 36 H 0.156 0.844 37 H 0.141 0.859 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.375 0.625 44 H 0.247 0.753 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.501 10.609 12.140 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.026 4.026 3 C -0.200 4.200 4 C -0.025 4.025 5 N -0.221 5.221 6 C 0.008 3.992 7 C -0.125 4.125 8 C -0.080 4.080 9 C -0.150 4.150 10 C 0.355 3.645 11 O -0.464 6.464 12 N -0.332 5.332 13 C -0.009 4.009 14 C -0.118 4.118 15 H 0.131 0.869 16 C -0.183 4.183 17 C 0.052 3.948 18 H 0.109 0.891 19 N -0.362 5.362 20 C -0.362 4.362 21 H 0.108 0.892 22 C -0.264 4.264 23 N -0.621 5.621 24 Si 0.792 3.208 25 H -0.178 1.178 26 H -0.233 1.233 27 H -0.229 1.229 28 C -0.058 4.058 29 C -0.102 4.102 30 C -0.133 4.133 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.192 0.808 35 H 0.213 0.787 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.208 0.792 44 H 0.056 0.944 45 H 0.114 0.886 46 H 0.086 0.914 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 11.731 10.150 12.050 19.643 hybrid contribution -1.285 -0.087 -1.341 1.860 sum 10.446 10.064 10.708 18.029 Atomic orbital electron populations 1.21058 0.88307 1.04590 1.04579 1.20594 0.97875 0.91792 0.92311 1.22177 0.95457 0.99692 1.02670 1.23698 0.92332 0.96868 0.89634 1.68105 1.40588 0.98140 1.15239 1.19251 0.90089 0.93216 0.96621 1.20823 1.01196 0.89306 1.01157 1.20905 0.92359 0.99070 0.95618 1.19860 0.94917 0.92305 1.07951 1.18252 0.80829 0.89053 0.76382 1.90709 1.65549 1.37454 1.52701 1.48377 1.05109 1.09735 1.69935 1.22377 0.91883 0.86797 0.99855 1.22644 0.93376 0.95358 1.00435 0.86870 1.21474 0.97139 0.98610 1.01095 1.21551 0.89395 0.95466 0.88383 0.89074 1.42655 1.59082 1.13225 1.21266 1.19712 1.22066 0.92792 1.01655 0.89189 1.25458 1.03070 0.99152 0.98758 1.69823 1.49051 1.26831 1.16372 0.85241 0.77548 0.80108 0.77901 1.17848 1.23251 1.22937 1.23651 0.92129 0.88785 1.01213 1.23324 1.03570 0.90433 0.92834 1.18923 0.94274 0.94738 1.05340 0.88116 0.88491 0.91753 0.80764 0.78691 0.82684 0.84110 0.93387 0.90184 0.94382 0.91118 0.92064 0.79168 0.94438 0.88608 0.91383 0.80242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.59 71.24 0.68 -1.55 16 2 C -0.02 -0.37 5.92 -19.60 -0.12 -0.48 16 3 C -0.18 -2.84 9.72 22.14 0.22 -2.62 16 4 C 0.15 2.50 11.14 85.04 0.95 3.45 16 5 N -0.51 -12.44 10.33 -188.47 -1.95 -14.39 16 6 C 0.13 3.50 6.61 40.37 0.27 3.77 16 7 C -0.11 -2.77 9.95 22.30 0.22 -2.54 16 8 C -0.06 -1.68 9.48 22.26 0.21 -1.47 16 9 C -0.15 -4.62 5.87 -20.10 -0.12 -4.74 16 10 C 0.56 20.23 7.80 86.76 0.68 20.91 16 11 O -0.58 -24.10 16.64 -3.92 -0.07 -24.16 16 12 N -0.60 -19.88 3.32 -833.08 -2.77 -22.65 16 13 C 0.11 3.60 6.34 86.93 0.55 4.15 16 14 C -0.10 -2.70 3.53 -9.32 -0.03 -2.74 16 15 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 16 C -0.13 -3.58 8.85 71.98 0.64 -2.94 16 17 C 0.16 5.19 3.36 46.18 0.15 5.34 16 18 H 0.09 2.63 8.12 -2.38 -0.02 2.61 16 19 N -0.72 -31.23 4.62 -317.32 -1.47 -32.70 16 20 C -0.23 -11.06 9.98 84.03 0.84 -10.22 16 21 H 0.09 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 23 N -0.97 -56.36 13.06 21.65 0.28 -56.08 16 24 Si 0.96 42.66 29.55 68.60 2.03 44.69 16 25 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 27 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 28 C 0.07 2.00 4.61 86.73 0.40 2.40 16 29 C -0.08 -2.34 7.89 22.82 0.18 -2.16 16 30 C -0.13 -3.43 5.74 -21.29 -0.12 -3.55 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.33 8.10 -2.38 -0.02 1.31 16 33 H 0.06 1.37 6.51 -2.39 -0.02 1.35 16 34 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.14 3.87 7.64 -2.91 -0.02 3.84 16 38 H 0.05 1.76 7.99 -2.39 -0.02 1.74 16 39 H 0.08 2.40 8.09 -2.38 -0.02 2.38 16 40 H 0.04 1.34 6.39 -2.39 -0.02 1.32 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.37 18.27 6.12 -92.71 -0.57 17.71 16 44 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.10 2.30 6.66 -2.39 -0.02 2.28 16 46 H 0.07 2.34 6.70 -2.39 -0.02 2.33 16 47 H 0.18 4.81 1.10 -9.90 -0.01 4.80 16 Total: -1.00 -69.34 377.01 2.56 -66.78 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.44 Total: 36.86 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.06 Total: 1.65 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -5.90 Total: -125.82 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.07 Total: -24.16 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -69.34 2.56 -66.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054679650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.381 kcal (2) G-P(sol) polarization free energy of solvation -69.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds