Wall clock time and date at job start Tue Mar 31 2020 22:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39230 * 119.15164 * 2 1 4 4 C 1.36625 * 119.90155 * 179.97438 * 3 2 1 5 5 C 1.40800 * 118.15571 * 359.97438 * 4 3 2 6 6 C 1.40480 * 121.25424 * 179.97438 * 5 4 3 7 7 C 1.36314 * 120.08510 * 180.02562 * 6 5 4 8 8 C 1.38907 * 121.05159 * 359.65684 * 7 6 5 9 9 C 1.38712 * 120.73125 * 0.62650 * 8 7 6 10 10 C 1.47434 * 120.33105 * 179.70520 * 9 8 7 11 11 O 1.21609 * 119.99685 * 187.17873 * 10 9 8 12 12 N 1.34767 * 120.00118 * 7.17523 * 10 9 8 13 13 C 1.47026 * 125.65391 * 354.39061 * 12 10 9 14 14 C 1.54323 * 107.27490 * 181.02320 * 13 12 10 15 15 H 1.09005 * 110.71318 * 263.82616 * 14 13 12 16 16 C 1.52995 * 110.72338 * 140.55409 * 14 13 12 17 17 C 1.55156 * 102.94395 * 22.18872 * 14 13 12 18 18 H 1.08994 * 111.03961 * 206.41428 * 17 14 13 19 19 N 1.46499 * 111.00541 * 82.57307 * 17 14 13 20 20 C 1.36939 * 120.00208 * 161.34861 * 19 17 14 21 21 H 1.08001 * 119.99333 * 0.02562 * 20 19 17 22 22 C 1.38805 * 120.00316 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00225 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99805 * 0.27746 * 22 20 19 25 25 H 1.48502 * 109.47004 * 269.72531 * 24 22 20 26 26 H 1.48498 * 109.47229 * 29.72156 * 24 22 20 27 27 H 1.48497 * 109.47047 * 149.72681 * 24 22 20 28 28 C 1.47429 * 125.64984 * 174.34323 * 12 10 9 29 29 C 1.41550 * 118.94461 * 0.02562 * 5 4 3 30 30 N 1.31229 * 119.15143 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.46927 * 90.00319 * 1 2 3 32 32 H 1.08999 * 109.47036 * 209.99585 * 1 2 3 33 33 H 1.09002 * 109.47083 * 329.99775 * 1 2 3 34 34 H 1.08002 * 120.04717 * 359.97438 * 3 2 1 35 35 H 1.08006 * 120.92474 * 180.02562 * 4 3 2 36 36 H 1.08003 * 119.95540 * 0.02562 * 6 5 4 37 37 H 1.08004 * 119.47164 * 179.97438 * 7 6 5 38 38 H 1.08007 * 119.63625 * 180.30621 * 8 7 6 39 39 H 1.09005 * 109.87674 * 300.43554 * 13 12 10 40 40 H 1.08999 * 109.88291 * 61.44292 * 13 12 10 41 41 H 1.09004 * 109.47020 * 306.47955 * 16 14 13 42 42 H 1.09005 * 109.46974 * 66.46940 * 16 14 13 43 43 H 1.08993 * 109.47382 * 186.47905 * 16 14 13 44 44 H 0.97005 * 119.99664 * 341.35055 * 19 17 14 45 45 H 0.97003 * 119.99808 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.36458 * 37.06815 * 28 12 10 47 47 H 1.09007 * 110.45905 * 274.79940 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5514 1.2338 0.0005 5 6 4.2320 0.0012 0.0016 6 6 5.6356 -0.0563 0.0017 7 6 6.2700 -1.2628 0.0022 8 6 5.5502 -2.4508 0.0098 9 6 4.1632 -2.4393 0.0041 10 6 3.4080 -3.7056 0.0057 11 8 2.1997 -3.6930 -0.1309 12 7 4.0568 -4.8768 0.1586 13 6 5.5160 -5.0471 0.2163 14 6 5.7955 -6.5568 0.3723 15 1 5.9447 -6.8149 1.4208 16 6 7.0053 -6.9729 -0.4667 17 6 4.4979 -7.2087 -0.1743 18 1 4.3354 -8.1900 0.2714 19 7 4.5306 -7.2978 -1.6362 20 6 3.6913 -8.1612 -2.2885 21 1 3.0051 -8.7760 -1.7251 22 6 3.7226 -8.2460 -3.6736 23 7 2.9156 -9.0755 -4.3005 24 14 4.9151 -7.1881 -4.6474 25 1 4.2636 -5.8996 -4.9949 26 1 6.1260 -6.9255 -3.8289 27 1 5.3035 -7.8980 -5.8925 28 6 3.4209 -6.1997 0.2965 29 6 3.4787 -1.1972 0.0016 30 7 2.1463 -1.1461 -0.0005 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6322 2.1436 -0.0004 35 1 4.0943 2.1675 0.0010 36 1 6.2128 0.8565 0.0013 37 1 7.3496 -1.2956 0.0018 38 1 6.0764 -3.3941 0.0151 39 1 5.9688 -4.6795 -0.7047 40 1 5.9192 -4.5028 1.0703 41 1 6.8588 -6.6539 -1.4987 42 1 7.9040 -6.5043 -0.0658 43 1 7.1149 -8.0568 -0.4336 44 1 5.1468 -6.7452 -2.1421 45 1 2.9378 -9.1350 -5.2684 46 1 2.5374 -6.2640 -0.3386 47 1 3.1539 -6.3875 1.3366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054773184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:06 Heat of formation + Delta-G solvation = 45.317348 kcal Electronic energy + Delta-G solvation = -29658.318247 eV Core-core repulsion = 25806.515583 eV Total energy + Delta-G solvation = -3851.802664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.14266 -41.00322 -38.95935 -38.17253 -35.91410 -34.51456 -33.91530 -32.95901 -32.62135 -31.59651 -29.51614 -28.95378 -27.54310 -25.81772 -24.92760 -24.42640 -23.42198 -22.79389 -21.09699 -20.64479 -19.87893 -19.25502 -18.20652 -17.68081 -17.21641 -16.97839 -16.49931 -16.19379 -15.98976 -15.79154 -15.62460 -15.31865 -14.81460 -14.72052 -14.53104 -14.34587 -14.04324 -13.93665 -13.81295 -13.78187 -13.61974 -13.23388 -13.11254 -13.05941 -12.94068 -12.69488 -12.40508 -12.31298 -12.25683 -12.02444 -11.91119 -11.59552 -11.50029 -11.22386 -11.09825 -11.02975 -10.13086 -9.78041 -9.67871 -9.33926 -9.18592 -8.06085 -5.38445 -0.82569 -0.19236 0.74814 1.26599 1.34423 1.39613 1.76816 1.97443 2.17098 2.43127 3.11111 3.20054 3.22986 3.42009 3.46549 3.57648 3.67837 3.78942 3.86137 3.95554 4.00252 4.04801 4.17284 4.30840 4.38323 4.43150 4.45577 4.59811 4.61984 4.64201 4.67637 4.71636 4.81233 4.89630 4.93288 4.96950 4.99132 5.05884 5.12459 5.19591 5.22199 5.26397 5.34421 5.39751 5.54023 5.60777 5.74780 5.85092 6.18565 6.54630 7.04722 7.09087 7.24371 7.80483 7.98194 9.15730 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012613 B = 0.003571 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.451341 B = 7839.370216 C = 8493.548093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.137 3.863 3 C -0.177 4.177 4 C -0.045 4.045 5 C -0.137 4.137 6 C -0.054 4.054 7 C -0.131 4.131 8 C -0.085 4.085 9 C -0.153 4.153 10 C 0.552 3.448 11 O -0.564 6.564 12 N -0.608 5.608 13 C 0.089 3.911 14 C -0.099 4.099 15 H 0.126 0.874 16 C -0.134 4.134 17 C 0.165 3.835 18 H 0.081 0.919 19 N -0.735 5.735 20 C -0.226 4.226 21 H 0.058 0.942 22 C -0.063 4.063 23 N -0.984 5.984 24 Si 0.944 3.056 25 H -0.299 1.299 26 H -0.236 1.236 27 H -0.291 1.291 28 C 0.085 3.915 29 C 0.135 3.865 30 N -0.507 5.507 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.176 0.824 35 H 0.188 0.812 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.184 0.816 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.035 0.965 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.366 0.634 45 H 0.256 0.744 46 H 0.030 0.970 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.277 25.377 14.743 32.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.015 4.015 3 C -0.197 4.197 4 C -0.070 4.070 5 C -0.140 4.140 6 C -0.073 4.073 7 C -0.149 4.149 8 C -0.105 4.105 9 C -0.157 4.157 10 C 0.342 3.658 11 O -0.443 6.443 12 N -0.341 5.341 13 C -0.032 4.032 14 C -0.118 4.118 15 H 0.144 0.856 16 C -0.192 4.192 17 C 0.055 3.945 18 H 0.099 0.901 19 N -0.378 5.378 20 C -0.357 4.357 21 H 0.076 0.924 22 C -0.254 4.254 23 N -0.634 5.634 24 Si 0.772 3.228 25 H -0.226 1.226 26 H -0.160 1.160 27 H -0.217 1.217 28 C -0.040 4.040 29 C 0.012 3.988 30 N -0.217 5.217 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.193 0.807 35 H 0.205 0.795 36 H 0.196 0.804 37 H 0.196 0.804 38 H 0.200 0.800 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.055 0.945 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.201 0.799 45 H 0.065 0.935 46 H 0.049 0.951 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.058 24.401 14.632 30.902 hybrid contribution -0.339 0.457 -1.319 1.436 sum 11.719 24.859 13.314 30.538 Atomic orbital electron populations 1.20857 0.87734 1.04026 1.03608 1.22274 0.98638 0.88745 0.91829 1.22116 0.95814 0.99247 1.02489 1.22002 0.94473 0.97672 0.92851 1.19203 0.96340 0.93541 1.04867 1.21726 0.91341 1.00687 0.93531 1.21377 1.02538 0.90763 1.00213 1.23260 0.91660 1.03526 0.92006 1.19853 0.94924 0.90878 1.10079 1.18333 0.86882 0.83488 0.77073 1.90789 1.15967 1.87052 1.50522 1.48364 1.08570 1.05766 1.71440 1.22901 0.79642 0.98076 1.02615 1.22602 0.94348 0.92360 1.02465 0.85582 1.21670 0.96790 1.02180 0.98564 1.21624 0.93430 0.96300 0.83130 0.90102 1.42640 1.44881 1.47725 1.02505 1.19040 1.12690 1.13850 0.90134 0.92358 1.25433 1.01446 1.01021 0.97521 1.69875 1.43066 1.42372 1.08114 0.85584 0.80547 0.77788 0.78912 1.22633 1.15963 1.21700 1.23035 0.98033 0.83081 0.99900 1.18963 0.89506 0.92908 0.97427 1.68096 1.09463 1.30280 1.13821 0.89953 0.92719 0.86938 0.80666 0.79453 0.80363 0.80421 0.79959 0.90344 0.86900 0.94545 0.88906 0.92280 0.79928 0.93474 0.95114 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 10.15 71.24 0.72 -1.60 16 2 C 0.14 3.77 6.78 42.89 0.29 4.06 16 3 C -0.18 -3.16 9.64 22.13 0.21 -2.95 16 4 C -0.04 -0.70 9.89 22.52 0.22 -0.48 16 5 C -0.14 -3.05 5.74 -21.29 -0.12 -3.17 16 6 C -0.05 -0.76 9.75 22.37 0.22 -0.54 16 7 C -0.13 -1.86 9.93 21.98 0.22 -1.64 16 8 C -0.09 -1.88 8.61 22.54 0.19 -1.68 16 9 C -0.15 -5.14 5.90 -19.86 -0.12 -5.25 16 10 C 0.55 23.09 7.79 86.67 0.68 23.76 16 11 O -0.56 -29.47 15.46 -4.06 -0.06 -29.53 16 12 N -0.61 -21.78 3.33 -831.31 -2.77 -24.54 16 13 C 0.09 2.12 4.47 86.73 0.39 2.51 16 14 C -0.10 -2.33 3.42 -9.61 -0.03 -2.36 16 15 H 0.13 2.13 8.14 -2.38 -0.02 2.12 16 16 C -0.13 -2.99 8.71 71.98 0.63 -2.36 16 17 C 0.17 5.96 3.44 46.38 0.16 6.12 16 18 H 0.08 2.91 8.13 -2.39 -0.02 2.89 16 19 N -0.73 -33.98 4.54 -316.39 -1.44 -35.42 16 20 C -0.23 -13.15 10.47 84.03 0.88 -12.27 16 21 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 22 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 23 N -0.98 -65.39 13.97 21.65 0.30 -65.09 16 24 Si 0.94 47.13 27.74 68.60 1.90 49.04 16 25 H -0.30 -15.51 7.11 99.48 0.71 -14.81 16 26 H -0.24 -10.06 6.52 99.48 0.65 -9.41 16 27 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 28 C 0.09 3.33 6.63 86.85 0.58 3.91 16 29 C 0.14 4.50 6.61 40.62 0.27 4.77 16 30 N -0.51 -19.04 8.36 -176.10 -1.47 -20.51 16 31 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 1.50 8.07 -2.39 -0.02 1.49 16 34 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 37 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 38 H 0.18 3.22 2.70 -8.93 -0.02 3.19 16 39 H 0.08 1.81 6.36 -2.38 -0.02 1.79 16 40 H 0.11 1.83 6.75 -2.39 -0.02 1.81 16 41 H 0.04 0.99 6.35 -2.38 -0.02 0.98 16 42 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.37 16.31 3.94 -92.70 -0.37 15.95 16 45 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 46 H 0.03 1.53 7.99 -2.39 -0.02 1.51 16 47 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -95.77 375.31 2.88 -92.89 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.56 Total: 25.74 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 5.85 Total: 7.43 kcal Atomic # 7 Polarization: -140.19 SS G_CDS: -5.37 Total: -145.56 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.06 Total: -29.53 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.04 kcal Total: -95.77 2.88 -92.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054773184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.203 kcal (2) G-P(sol) polarization free energy of solvation -95.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds