Wall clock time and date at job start Tue Mar 31 2020 22:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39230 * 119.15535 * 2 1 4 4 C 1.36627 * 119.90421 * 179.71820 * 3 2 1 5 5 C 1.40795 * 118.15704 * 0.28912 * 4 3 2 6 6 C 1.40475 * 121.26037 * 180.02562 * 5 4 3 7 7 C 1.36319 * 120.08684 * 180.02562 * 6 5 4 8 8 C 1.38912 * 121.05349 * 359.96574 * 7 6 5 9 9 C 1.38715 * 120.72761 * 0.02562 * 8 7 6 10 10 C 1.47435 * 120.33010 * 179.97438 * 9 8 7 11 11 O 1.21602 * 119.99773 * 132.92298 * 10 9 8 12 12 N 1.34778 * 120.00191 * 312.91990 * 10 9 8 13 13 C 1.47023 * 125.64567 * 4.86436 * 12 10 9 14 14 C 1.54330 * 107.26613 * 181.02203 * 13 12 10 15 15 H 1.09004 * 110.71458 * 263.82663 * 14 13 12 16 16 N 1.46500 * 110.71688 * 140.55656 * 14 13 12 17 17 C 1.36938 * 120.00093 * 86.45225 * 16 14 13 18 18 H 1.08008 * 119.99858 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00122 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99778 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 119.99838 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47325 * 89.99706 * 21 19 17 23 23 H 1.48493 * 109.47360 * 210.00011 * 21 19 17 24 24 H 1.48500 * 109.47335 * 329.99996 * 21 19 17 25 25 C 1.55153 * 102.94405 * 22.19236 * 14 13 12 26 26 H 1.08995 * 111.00492 * 82.57158 * 25 14 13 27 27 C 1.52998 * 111.00235 * 206.42485 * 25 14 13 28 28 C 1.47420 * 125.64745 * 184.55278 * 12 10 9 29 29 C 1.41549 * 118.94507 * 359.97438 * 5 4 3 30 30 N 1.31230 * 119.15432 * 180.29139 * 2 1 3 31 31 H 1.08998 * 109.47217 * 89.99591 * 1 2 3 32 32 H 1.08994 * 109.47214 * 209.99435 * 1 2 3 33 33 H 1.09000 * 109.46813 * 329.99522 * 1 2 3 34 34 H 1.08006 * 120.04750 * 0.02562 * 3 2 1 35 35 H 1.08006 * 120.92352 * 180.30203 * 4 3 2 36 36 H 1.08001 * 119.95818 * 359.97438 * 6 5 4 37 37 H 1.07998 * 119.47340 * 179.97438 * 7 6 5 38 38 H 1.08001 * 119.63499 * 180.02562 * 8 7 6 39 39 H 1.09000 * 109.88324 * 300.43552 * 13 12 10 40 40 H 1.08996 * 109.88380 * 61.45099 * 13 12 10 41 41 H 0.97001 * 119.99987 * 266.45104 * 16 14 13 42 42 H 0.96998 * 119.99453 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.47365 * 60.00092 * 27 25 14 44 44 H 1.09003 * 109.47214 * 179.97438 * 27 25 14 45 45 H 1.09002 * 109.47244 * 299.99896 * 27 25 14 46 46 H 1.09002 * 110.36867 * 274.75198 * 28 12 10 47 47 H 1.08996 * 110.36660 * 37.07292 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 0.0058 5 6 4.2321 0.0012 0.0054 6 6 5.6356 -0.0565 0.0118 7 6 6.2700 -1.2631 0.0107 8 6 5.5501 -2.4511 0.0041 9 6 4.1630 -2.4393 -0.0021 10 6 3.4078 -3.7055 -0.0096 11 8 2.4769 -3.8627 0.7569 12 7 3.7490 -4.6887 -0.8660 13 6 4.9075 -4.6728 -1.7710 14 6 4.8801 -5.9908 -2.5734 15 1 5.5284 -6.7363 -2.1126 16 7 5.2655 -5.7571 -3.9673 17 6 6.5877 -5.7709 -4.3237 18 1 7.3463 -5.9537 -3.5770 19 6 6.9529 -5.5500 -5.6446 20 7 8.2237 -5.5638 -5.9871 21 14 5.6408 -5.2332 -6.9358 22 1 5.3761 -3.7746 -7.0251 23 1 6.1115 -5.7323 -8.2527 24 1 4.3915 -5.9405 -6.5561 25 6 3.3931 -6.4236 -2.4802 26 1 2.7888 -5.9087 -3.2270 27 6 3.2540 -7.9411 -2.6166 28 6 3.0260 -5.9608 -1.0457 29 6 3.4789 -1.1972 -0.0004 30 7 2.1463 -1.1460 -0.0058 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3633 0.8900 0.5139 34 1 1.6323 2.1437 0.0004 35 1 4.0943 2.1675 0.0108 36 1 6.2129 0.8563 0.0166 37 1 7.3495 -1.2959 0.0152 38 1 6.0762 -3.3943 0.0039 39 1 4.8355 -3.8236 -2.4506 40 1 5.8290 -4.6074 -1.1926 41 1 4.5842 -5.5926 -4.6379 42 1 8.4788 -5.4098 -6.9102 43 1 3.8110 -8.4303 -1.8176 44 1 2.2018 -8.2173 -2.5472 45 1 3.6500 -8.2570 -3.5817 46 1 3.3595 -6.6938 -0.3111 47 1 1.9510 -5.8012 -0.9625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054773185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:10 Heat of formation + Delta-G solvation = 40.501019 kcal Electronic energy + Delta-G solvation = -29338.543642 eV Core-core repulsion = 25486.532127 eV Total energy + Delta-G solvation = -3852.011515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12643 -39.67334 -37.65705 -37.13120 -34.18001 -33.64477 -32.55739 -32.09850 -31.09291 -30.26484 -28.11276 -27.84019 -26.37101 -24.29060 -23.77009 -23.01010 -22.58242 -21.20891 -20.17811 -19.37424 -18.37233 -17.58059 -17.33780 -16.61760 -16.24530 -15.75487 -15.26602 -14.90951 -14.83289 -14.52906 -14.23016 -13.99267 -13.70768 -13.44092 -13.22876 -13.18433 -13.10377 -12.96374 -12.59915 -12.57551 -12.32971 -12.31102 -11.96571 -11.69830 -11.57482 -11.48403 -11.29793 -11.12807 -10.81427 -10.64822 -10.61422 -10.35244 -10.03717 -9.87780 -9.67272 -9.37185 -9.04065 -8.81047 -8.40935 -8.25216 -7.41551 -5.86984 -3.24451 0.11113 0.68678 1.69567 2.67710 2.99040 3.26891 3.31708 3.35061 3.40425 3.99697 4.02760 4.35358 4.48922 4.50725 4.61921 4.67620 4.75715 4.91919 4.97728 5.04103 5.07946 5.14694 5.18258 5.31995 5.43303 5.44717 5.49478 5.53065 5.68054 5.71079 5.73255 5.78314 5.81397 5.85272 5.87498 5.91637 6.09148 6.11862 6.13328 6.21540 6.30229 6.35348 6.38100 6.47396 6.56095 6.66487 6.76781 7.75301 7.87405 7.90625 8.31901 8.41266 9.08537 9.81161 9.99626 11.30689 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.003576 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.810615 B = 7827.583094 C = 8720.512713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.158 3.842 3 C -0.176 4.176 4 C -0.053 4.053 5 C -0.114 4.114 6 C -0.078 4.078 7 C -0.119 4.119 8 C -0.060 4.060 9 C -0.101 4.101 10 C 0.581 3.419 11 O -0.525 6.525 12 N -0.612 5.612 13 C 0.072 3.928 14 C 0.183 3.817 15 H 0.075 0.925 16 N -0.736 5.736 17 C -0.251 4.251 18 H 0.093 0.907 19 C 0.011 3.989 20 N -0.929 5.929 21 Si 0.881 3.119 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.117 4.117 26 H 0.081 0.919 27 C -0.134 4.134 28 C 0.118 3.882 29 C 0.168 3.832 30 N -0.457 5.457 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.364 0.636 42 H 0.261 0.739 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 11.386 13.073 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.005 3.995 3 C -0.195 4.195 4 C -0.079 4.079 5 C -0.116 4.116 6 C -0.096 4.096 7 C -0.137 4.137 8 C -0.080 4.080 9 C -0.104 4.104 10 C 0.369 3.631 11 O -0.401 6.401 12 N -0.346 5.346 13 C -0.054 4.054 14 C 0.071 3.929 15 H 0.093 0.907 16 N -0.378 5.378 17 C -0.381 4.381 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.576 5.576 21 Si 0.711 3.289 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.202 1.202 25 C -0.137 4.137 26 H 0.099 0.901 27 C -0.192 4.192 28 C -0.005 4.005 29 C 0.045 3.955 30 N -0.166 5.166 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.197 0.803 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.835 10.465 13.491 20.221 hybrid contribution -0.125 1.245 -1.163 1.708 sum -10.960 11.709 12.328 20.229 Atomic orbital electron populations 1.20780 0.88654 1.03667 1.03288 1.21583 0.97333 0.88063 0.92487 1.21714 0.95064 0.99236 1.03531 1.21450 0.94459 0.97036 0.94940 1.18770 0.94866 0.93807 1.04171 1.21119 0.92453 0.98730 0.97342 1.20885 1.00853 0.91798 1.00140 1.21621 0.92333 0.99718 0.94364 1.19709 0.93411 0.92221 1.05093 1.17512 0.83330 0.82120 0.80176 1.90766 1.29303 1.80629 1.39449 1.48421 1.29237 1.17453 1.39527 1.23375 0.86875 1.02903 0.92248 1.21218 0.92719 0.92748 0.86205 0.90672 1.42714 1.05527 1.86441 1.03088 1.19058 0.82373 1.42138 0.94512 0.88961 1.24653 0.95622 1.01388 0.96882 1.69695 1.14323 1.55747 1.17828 0.86611 0.81817 0.78218 0.82260 1.21057 1.21612 1.20191 1.22703 0.98197 0.97113 0.95693 0.90057 1.21624 1.01000 0.93775 1.02816 1.22275 0.97201 0.84698 0.96329 1.18450 0.89122 0.91340 0.96578 1.67918 1.08111 1.28457 1.12114 0.90158 0.90068 0.90601 0.84536 0.84179 0.84888 0.84550 0.84101 0.90939 0.91750 0.80253 0.92925 0.92468 0.93024 0.91481 0.91370 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.15 36.01 0.37 -0.63 16 2 C 0.16 2.00 6.78 -82.48 -0.56 1.44 16 3 C -0.18 -1.75 9.64 -39.79 -0.38 -2.13 16 4 C -0.05 -0.53 9.89 -39.20 -0.39 -0.92 16 5 C -0.11 -1.47 5.74 -106.83 -0.61 -2.08 16 6 C -0.08 -0.84 9.75 -39.43 -0.38 -1.22 16 7 C -0.12 -1.35 9.93 -40.02 -0.40 -1.74 16 8 C -0.06 -0.82 8.50 -39.16 -0.33 -1.15 16 9 C -0.10 -1.65 5.45 -104.61 -0.57 -2.22 16 10 C 0.58 10.55 7.15 -12.51 -0.09 10.46 16 11 O -0.53 -10.91 16.76 5.28 0.09 -10.82 16 12 N -0.61 -10.23 3.32 -171.64 -0.57 -10.80 16 13 C 0.07 1.22 5.39 -3.06 -0.02 1.20 16 14 C 0.18 3.26 3.06 -66.09 -0.20 3.06 16 15 H 0.08 1.35 8.02 -51.93 -0.42 0.94 16 16 N -0.74 -16.20 4.98 -51.65 -0.26 -16.46 16 17 C -0.25 -6.61 10.46 -15.06 -0.16 -6.77 16 18 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 19 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 20 N -0.93 -27.97 13.97 55.49 0.78 -27.20 16 21 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 25 C -0.12 -1.78 3.26 -88.35 -0.29 -2.07 16 26 H 0.08 1.29 8.00 -51.93 -0.42 0.88 16 27 C -0.13 -1.79 9.31 37.16 0.35 -1.44 16 28 C 0.12 1.76 6.36 -2.41 -0.02 1.75 16 29 C 0.17 2.71 6.59 -84.58 -0.56 2.15 16 30 N -0.46 -7.56 9.24 -7.01 -0.06 -7.63 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 34 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.14 1.78 5.87 -52.49 -0.31 1.47 16 39 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 40 H 0.06 1.02 5.97 -51.93 -0.31 0.71 16 41 H 0.36 8.04 5.57 -40.82 -0.23 7.82 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 47 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -34.40 384.49 -10.03 -44.43 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.74 Total: 8.17 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -4.34 Total: -2.11 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -0.12 Total: -62.08 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.40 -10.03 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054773185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.930 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds