Wall clock time and date at job start Tue Mar 31 2020 22:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39231 * 119.15782 * 2 1 4 4 C 1.36626 * 119.90657 * 180.29644 * 3 2 1 5 5 C 1.40800 * 118.15418 * 359.96398 * 4 3 2 6 6 C 1.40480 * 121.25373 * 180.02562 * 5 4 3 7 7 C 1.36322 * 120.08605 * 179.97438 * 6 5 4 8 8 C 1.38911 * 121.05174 * 359.97438 * 7 6 5 9 9 C 1.38710 * 120.72815 * 0.06389 * 8 7 6 10 10 C 1.47435 * 120.32759 * 179.97438 * 9 8 7 11 11 O 1.21610 * 119.99684 * 224.45800 * 10 9 8 12 12 N 1.34777 * 120.00457 * 44.46122 * 10 9 8 13 13 C 1.47417 * 125.64883 * 185.29065 * 12 10 9 14 14 C 1.54921 * 104.83089 * 204.09232 * 13 12 10 15 15 H 1.08998 * 111.00411 * 81.06605 * 14 13 12 16 16 C 1.52999 * 111.00061 * 204.87867 * 14 13 12 17 17 C 1.55151 * 101.57585 * 322.98779 * 14 13 12 18 18 H 1.09000 * 110.72213 * 276.95666 * 17 14 13 19 19 N 1.46507 * 110.71463 * 153.86876 * 17 14 13 20 20 C 1.36939 * 120.00061 * 155.00351 * 19 17 14 21 21 H 1.07997 * 119.99825 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99918 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99820 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99783 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47113 * 60.00358 * 24 22 20 26 26 H 1.48503 * 109.47066 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47250 * 299.99980 * 24 22 20 28 28 C 1.47027 * 125.64536 * 4.98143 * 12 10 9 29 29 C 1.41558 * 118.94748 * 0.03638 * 5 4 3 30 30 N 1.31244 * 119.15051 * 180.27422 * 2 1 3 31 31 H 1.09002 * 109.46775 * 269.72916 * 1 2 3 32 32 H 1.09001 * 109.46751 * 29.72356 * 1 2 3 33 33 H 1.08997 * 109.47419 * 149.72721 * 1 2 3 34 34 H 1.07996 * 120.04540 * 0.25463 * 3 2 1 35 35 H 1.07999 * 120.92735 * 180.02562 * 4 3 2 36 36 H 1.08000 * 119.95774 * 359.95738 * 6 5 4 37 37 H 1.07992 * 119.47357 * 180.02562 * 7 6 5 38 38 H 1.07995 * 119.63282 * 180.02562 * 8 7 6 39 39 H 1.09003 * 110.36922 * 322.92358 * 13 12 10 40 40 H 1.08997 * 110.37017 * 85.14635 * 13 12 10 41 41 H 1.09001 * 109.47627 * 58.54749 * 16 14 13 42 42 H 1.09009 * 109.46743 * 178.54495 * 16 14 13 43 43 H 1.08999 * 109.47333 * 298.54273 * 16 14 13 44 44 H 0.96997 * 119.99777 * 334.99628 * 19 17 14 45 45 H 0.97003 * 119.99527 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.88041 * 298.39753 * 28 12 10 47 47 H 1.08999 * 109.87913 * 59.55764 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2337 -0.0061 5 6 4.2320 0.0011 -0.0115 6 6 5.6356 -0.0565 -0.0174 7 6 6.2700 -1.2631 -0.0221 8 6 5.5501 -2.4511 -0.0205 9 6 4.1631 -2.4394 -0.0155 10 6 3.4079 -3.7056 -0.0145 11 8 2.4482 -3.8418 -0.7489 12 7 3.7810 -4.7123 0.8003 13 6 3.1888 -6.0620 0.8252 14 6 3.4822 -6.5976 2.2489 15 1 2.7609 -6.2103 2.9684 16 6 3.5020 -8.1274 2.2659 17 6 4.8974 -6.0193 2.5136 18 1 5.6632 -6.6550 2.0692 19 7 5.1306 -5.8577 3.9510 20 6 6.4089 -5.8636 4.4421 21 1 7.2450 -5.9877 3.7699 22 6 6.6299 -5.7100 5.8039 23 7 5.6109 -5.5582 6.6229 24 14 8.3736 -5.7187 6.4739 25 1 9.1461 -4.6101 5.8578 26 1 8.3385 -5.5377 7.9474 27 1 9.0222 -7.0144 6.1491 28 6 4.8504 -4.6480 1.8073 29 6 3.4787 -1.1974 -0.0112 30 7 2.1463 -1.1462 -0.0055 31 1 -0.3633 -0.0049 1.0277 32 1 -0.3633 0.8925 -0.5095 33 1 -0.3634 -0.8875 -0.5180 34 1 1.6324 2.1435 0.0042 35 1 4.0944 2.1674 -0.0058 36 1 6.2128 0.8563 -0.0186 37 1 7.3494 -1.2958 -0.0262 38 1 6.0762 -3.3942 -0.0239 39 1 2.1136 -6.0078 0.6545 40 1 3.6599 -6.6969 0.0747 41 1 4.2599 -8.4888 1.5708 42 1 3.7356 -8.4765 3.2718 43 1 2.5248 -8.5068 1.9675 44 1 4.3796 -5.7466 4.5547 45 1 5.7654 -5.4505 7.5745 46 1 5.8051 -4.4460 1.3216 47 1 4.6290 -3.8661 2.5337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054773187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:13 Heat of formation + Delta-G solvation = 36.580538 kcal Electronic energy + Delta-G solvation = -29230.285542 eV Core-core repulsion = 25378.104022 eV Total energy + Delta-G solvation = -3852.181520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.09359 -39.58253 -37.55696 -37.08140 -34.04381 -33.60879 -32.48576 -32.06114 -30.75976 -30.21049 -28.03843 -27.48852 -26.28176 -24.27069 -23.83926 -23.06861 -22.56713 -21.31134 -19.92683 -19.31725 -18.34572 -17.32537 -17.15301 -16.57467 -16.18797 -15.62332 -15.17919 -14.90776 -14.80850 -14.47113 -14.17112 -13.88875 -13.61863 -13.44848 -13.26226 -13.06418 -13.04422 -12.91823 -12.56487 -12.43797 -12.26439 -12.20107 -11.89584 -11.53920 -11.47454 -11.35641 -11.10595 -10.99765 -10.73926 -10.60207 -10.57047 -10.27203 -9.99206 -9.85413 -9.71062 -9.31394 -8.99716 -8.78883 -8.36943 -8.18183 -7.09469 -5.85389 -3.16156 0.12726 0.70769 1.71663 2.69164 3.07630 3.33572 3.38424 3.43430 3.44361 4.03304 4.06311 4.38095 4.49941 4.54275 4.64729 4.70156 4.82493 4.96078 5.02771 5.15208 5.17971 5.22417 5.27221 5.35496 5.48389 5.54405 5.57582 5.65907 5.75005 5.76679 5.84447 5.87775 5.88745 5.92394 5.96210 6.03379 6.12344 6.19720 6.24338 6.28338 6.37644 6.41554 6.53473 6.61372 6.67323 6.69273 6.89865 7.61150 7.84009 7.95083 8.31702 8.48138 9.43662 9.98096 10.33073 11.36471 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.003416 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.015995 B = 8194.181360 C = 9391.451127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.159 3.841 3 C -0.175 4.175 4 C -0.054 4.054 5 C -0.115 4.115 6 C -0.077 4.077 7 C -0.121 4.121 8 C -0.061 4.061 9 C -0.098 4.098 10 C 0.578 3.422 11 O -0.525 6.525 12 N -0.611 5.611 13 C 0.116 3.884 14 C -0.115 4.115 15 H 0.083 0.917 16 C -0.132 4.132 17 C 0.178 3.822 18 H 0.069 0.931 19 N -0.710 5.710 20 C -0.249 4.249 21 H 0.072 0.928 22 C -0.007 4.007 23 N -0.929 5.929 24 Si 0.907 3.093 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.070 3.930 29 C 0.168 3.832 30 N -0.455 5.455 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.060 0.940 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 11.280 -14.693 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.006 3.994 3 C -0.195 4.195 4 C -0.080 4.080 5 C -0.117 4.117 6 C -0.096 4.096 7 C -0.139 4.139 8 C -0.081 4.081 9 C -0.102 4.102 10 C 0.366 3.634 11 O -0.402 6.402 12 N -0.345 5.345 13 C -0.007 4.007 14 C -0.135 4.135 15 H 0.101 0.899 16 C -0.189 4.189 17 C 0.065 3.935 18 H 0.087 0.913 19 N -0.350 5.350 20 C -0.380 4.380 21 H 0.090 0.910 22 C -0.204 4.204 23 N -0.576 5.576 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.211 1.211 28 C -0.056 4.056 29 C 0.045 3.955 30 N -0.163 5.163 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.692 10.383 -15.048 18.875 hybrid contribution 1.387 1.060 0.774 1.909 sum -3.306 11.442 -14.274 18.591 Atomic orbital electron populations 1.20785 0.88627 1.03641 1.03364 1.21603 0.97378 0.88048 0.92398 1.21718 0.95059 0.99252 1.03434 1.21441 0.94468 0.97003 0.95059 1.18778 0.94843 0.93847 1.04200 1.21107 0.92484 0.98668 0.97351 1.20856 1.00703 0.91851 1.00489 1.21569 0.92375 0.99539 0.94596 1.19747 0.93376 0.92298 1.04788 1.17523 0.83488 0.82170 0.80178 1.90766 1.26758 1.81359 1.41272 1.48408 1.37120 1.11950 1.37035 1.22243 0.98904 0.82273 0.97272 1.22653 0.99233 0.96328 0.95266 0.89903 1.21591 1.00759 0.93837 1.02752 1.21255 0.93939 0.91476 0.86814 0.91324 1.42357 1.06333 1.86202 1.00101 1.19198 0.84577 1.42936 0.91243 0.91031 1.24757 0.97255 1.02295 0.96099 1.69654 1.29031 1.55778 1.03151 0.86281 0.84152 0.77877 0.77918 1.21188 1.21675 1.21144 1.23473 0.88705 1.03377 0.90033 1.18478 0.89165 0.91362 0.96454 1.67943 1.08078 1.28396 1.11926 0.90085 0.90625 0.90035 0.84529 0.84210 0.84944 0.84710 0.84217 0.90873 0.91662 0.92825 0.91452 0.93215 0.77877 0.93304 0.92188 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.15 36.00 0.37 -0.68 16 2 C 0.16 2.07 6.78 -82.48 -0.56 1.51 16 3 C -0.17 -1.79 9.64 -39.80 -0.38 -2.17 16 4 C -0.05 -0.55 9.89 -39.20 -0.39 -0.94 16 5 C -0.11 -1.49 5.74 -106.82 -0.61 -2.11 16 6 C -0.08 -0.83 9.75 -39.43 -0.38 -1.22 16 7 C -0.12 -1.35 9.93 -40.02 -0.40 -1.75 16 8 C -0.06 -0.83 8.41 -39.16 -0.33 -1.16 16 9 C -0.10 -1.64 5.42 -104.61 -0.57 -2.21 16 10 C 0.58 10.81 7.18 -12.51 -0.09 10.72 16 11 O -0.52 -11.19 16.59 5.27 0.09 -11.11 16 12 N -0.61 -10.61 3.33 -171.77 -0.57 -11.18 16 13 C 0.12 1.83 6.40 -2.53 -0.02 1.81 16 14 C -0.11 -1.87 3.27 -88.47 -0.29 -2.16 16 15 H 0.08 1.46 8.01 -51.93 -0.42 1.05 16 16 C -0.13 -1.89 9.30 37.16 0.35 -1.55 16 17 C 0.18 3.33 3.08 -66.09 -0.20 3.12 16 18 H 0.07 1.27 7.96 -51.93 -0.41 0.85 16 19 N -0.71 -16.74 5.15 -51.65 -0.27 -17.00 16 20 C -0.25 -6.48 9.96 -15.06 -0.15 -6.63 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 24 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.07 1.24 5.66 -3.06 -0.02 1.22 16 29 C 0.17 2.77 6.59 -84.58 -0.56 2.21 16 30 N -0.45 -7.74 9.16 -7.01 -0.06 -7.80 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.74 6.08 -52.49 -0.32 1.42 16 39 H 0.07 1.18 7.99 -51.93 -0.41 0.76 16 40 H 0.07 0.93 8.04 -51.93 -0.42 0.52 16 41 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 42 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.39 9.88 7.76 -40.82 -0.32 9.57 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.06 0.97 5.73 -51.93 -0.30 0.67 16 47 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -33.64 387.50 -10.38 -44.02 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.78 Total: 9.39 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -4.33 Total: -2.27 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.18 Total: -62.34 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.64 -10.38 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054773187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.605 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds