Wall clock time and date at job start Tue Mar 31 2020 22:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39231 * 119.15782 * 2 1 4 4 C 1.36626 * 119.90657 * 180.29644 * 3 2 1 5 5 C 1.40800 * 118.15418 * 359.96398 * 4 3 2 6 6 C 1.40480 * 121.25373 * 180.02562 * 5 4 3 7 7 C 1.36322 * 120.08605 * 179.97438 * 6 5 4 8 8 C 1.38911 * 121.05174 * 359.97438 * 7 6 5 9 9 C 1.38710 * 120.72815 * 0.06389 * 8 7 6 10 10 C 1.47435 * 120.32759 * 179.97438 * 9 8 7 11 11 O 1.21610 * 119.99684 * 224.45800 * 10 9 8 12 12 N 1.34777 * 120.00457 * 44.46122 * 10 9 8 13 13 C 1.47417 * 125.64883 * 185.29065 * 12 10 9 14 14 C 1.54921 * 104.83089 * 204.09232 * 13 12 10 15 15 H 1.08998 * 111.00411 * 81.06605 * 14 13 12 16 16 C 1.52999 * 111.00061 * 204.87867 * 14 13 12 17 17 C 1.55151 * 101.57585 * 322.98779 * 14 13 12 18 18 H 1.09000 * 110.72213 * 276.95666 * 17 14 13 19 19 N 1.46507 * 110.71463 * 153.86876 * 17 14 13 20 20 C 1.36939 * 120.00061 * 155.00351 * 19 17 14 21 21 H 1.07997 * 119.99825 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99918 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99820 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99783 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47113 * 60.00358 * 24 22 20 26 26 H 1.48503 * 109.47066 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47250 * 299.99980 * 24 22 20 28 28 C 1.47027 * 125.64536 * 4.98143 * 12 10 9 29 29 C 1.41558 * 118.94748 * 0.03638 * 5 4 3 30 30 N 1.31244 * 119.15051 * 180.27422 * 2 1 3 31 31 H 1.09002 * 109.46775 * 269.72916 * 1 2 3 32 32 H 1.09001 * 109.46751 * 29.72356 * 1 2 3 33 33 H 1.08997 * 109.47419 * 149.72721 * 1 2 3 34 34 H 1.07996 * 120.04540 * 0.25463 * 3 2 1 35 35 H 1.07999 * 120.92735 * 180.02562 * 4 3 2 36 36 H 1.08000 * 119.95774 * 359.95738 * 6 5 4 37 37 H 1.07992 * 119.47357 * 180.02562 * 7 6 5 38 38 H 1.07995 * 119.63282 * 180.02562 * 8 7 6 39 39 H 1.09003 * 110.36922 * 322.92358 * 13 12 10 40 40 H 1.08997 * 110.37017 * 85.14635 * 13 12 10 41 41 H 1.09001 * 109.47627 * 58.54749 * 16 14 13 42 42 H 1.09009 * 109.46743 * 178.54495 * 16 14 13 43 43 H 1.08999 * 109.47333 * 298.54273 * 16 14 13 44 44 H 0.96997 * 119.99777 * 334.99628 * 19 17 14 45 45 H 0.97003 * 119.99527 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.88041 * 298.39753 * 28 12 10 47 47 H 1.08999 * 109.87913 * 59.55764 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2337 -0.0061 5 6 4.2320 0.0011 -0.0115 6 6 5.6356 -0.0565 -0.0174 7 6 6.2700 -1.2631 -0.0221 8 6 5.5501 -2.4511 -0.0205 9 6 4.1631 -2.4394 -0.0155 10 6 3.4079 -3.7056 -0.0145 11 8 2.4482 -3.8418 -0.7489 12 7 3.7810 -4.7123 0.8003 13 6 3.1888 -6.0620 0.8252 14 6 3.4822 -6.5976 2.2489 15 1 2.7609 -6.2103 2.9684 16 6 3.5020 -8.1274 2.2659 17 6 4.8974 -6.0193 2.5136 18 1 5.6632 -6.6550 2.0692 19 7 5.1306 -5.8577 3.9510 20 6 6.4089 -5.8636 4.4421 21 1 7.2450 -5.9877 3.7699 22 6 6.6299 -5.7100 5.8039 23 7 5.6109 -5.5582 6.6229 24 14 8.3736 -5.7187 6.4739 25 1 9.1461 -4.6101 5.8578 26 1 8.3385 -5.5377 7.9474 27 1 9.0222 -7.0144 6.1491 28 6 4.8504 -4.6480 1.8073 29 6 3.4787 -1.1974 -0.0112 30 7 2.1463 -1.1462 -0.0055 31 1 -0.3633 -0.0049 1.0277 32 1 -0.3633 0.8925 -0.5095 33 1 -0.3634 -0.8875 -0.5180 34 1 1.6324 2.1435 0.0042 35 1 4.0944 2.1674 -0.0058 36 1 6.2128 0.8563 -0.0186 37 1 7.3494 -1.2958 -0.0262 38 1 6.0762 -3.3942 -0.0239 39 1 2.1136 -6.0078 0.6545 40 1 3.6599 -6.6969 0.0747 41 1 4.2599 -8.4888 1.5708 42 1 3.7356 -8.4765 3.2718 43 1 2.5248 -8.5068 1.9675 44 1 4.3796 -5.7466 4.5547 45 1 5.7654 -5.4505 7.5745 46 1 5.8051 -4.4460 1.3216 47 1 4.6290 -3.8661 2.5337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054773187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:12 Heat of formation + Delta-G solvation = 15.511941 kcal Electronic energy + Delta-G solvation = -29231.199145 eV Core-core repulsion = 25378.104022 eV Total energy + Delta-G solvation = -3853.095123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.09381 -40.90725 -38.91497 -38.14978 -35.85320 -34.61350 -33.87154 -32.97369 -32.52662 -31.22182 -29.21792 -28.85009 -27.52636 -25.94559 -24.92842 -24.26841 -23.45371 -22.72389 -21.41491 -20.55777 -19.28321 -19.09461 -18.50739 -17.66576 -17.40952 -16.91237 -16.54232 -16.22856 -15.76577 -15.74174 -15.48152 -15.34570 -14.90364 -14.77238 -14.51565 -14.27864 -14.06575 -13.95828 -13.81948 -13.65928 -13.52172 -13.11383 -13.01673 -12.99781 -12.81379 -12.77387 -12.37375 -12.31999 -12.22688 -12.14749 -12.03879 -11.68321 -11.54676 -11.46239 -11.15454 -10.90074 -10.33838 -9.72903 -9.68317 -9.27066 -9.05381 -7.92536 -5.23130 -0.79908 -0.21173 0.76121 1.51205 1.53395 1.59328 1.63249 1.84887 2.08708 2.58330 3.05384 3.16088 3.29697 3.38835 3.62315 3.68439 3.75572 3.83022 3.87885 3.93600 3.96152 4.11375 4.20810 4.29329 4.33636 4.41235 4.44487 4.56235 4.59811 4.66100 4.69605 4.73195 4.84336 4.86463 4.91183 4.97181 5.04337 5.09591 5.10669 5.13193 5.20740 5.27268 5.30977 5.34124 5.47633 5.55691 5.57382 5.82067 6.26653 6.43164 7.00548 7.08732 7.34340 8.05062 8.29963 9.30442 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.003416 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.015995 B = 8194.181360 C = 9391.451127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.143 3.857 3 C -0.176 4.176 4 C -0.044 4.044 5 C -0.136 4.136 6 C -0.058 4.058 7 C -0.132 4.132 8 C -0.055 4.055 9 C -0.147 4.147 10 C 0.576 3.424 11 O -0.564 6.564 12 N -0.612 5.612 13 C 0.117 3.883 14 C -0.105 4.105 15 H 0.063 0.937 16 C -0.125 4.125 17 C 0.174 3.826 18 H 0.081 0.919 19 N -0.722 5.722 20 C -0.242 4.242 21 H 0.085 0.915 22 C -0.071 4.071 23 N -0.970 5.970 24 Si 0.971 3.029 25 H -0.275 1.275 26 H -0.301 1.301 27 H -0.276 1.276 28 C 0.087 3.913 29 C 0.137 3.863 30 N -0.516 5.516 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.178 0.822 35 H 0.186 0.814 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.373 0.627 45 H 0.250 0.750 46 H 0.080 0.920 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 13.526 -16.014 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.009 4.009 3 C -0.195 4.195 4 C -0.069 4.069 5 C -0.138 4.138 6 C -0.076 4.076 7 C -0.150 4.150 8 C -0.075 4.075 9 C -0.151 4.151 10 C 0.366 3.634 11 O -0.444 6.444 12 N -0.345 5.345 13 C -0.005 4.005 14 C -0.125 4.125 15 H 0.081 0.919 16 C -0.182 4.182 17 C 0.063 3.937 18 H 0.099 0.901 19 N -0.360 5.360 20 C -0.373 4.373 21 H 0.102 0.898 22 C -0.263 4.263 23 N -0.620 5.620 24 Si 0.800 3.200 25 H -0.201 1.201 26 H -0.228 1.228 27 H -0.202 1.202 28 C -0.039 4.039 29 C 0.015 3.985 30 N -0.226 5.226 31 H 0.105 0.895 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.196 0.804 35 H 0.204 0.796 36 H 0.195 0.805 37 H 0.187 0.813 38 H 0.162 0.838 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.098 0.902 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.594 12.616 -16.420 20.868 hybrid contribution 0.662 0.451 1.098 1.360 sum -1.932 13.067 -15.321 20.229 Atomic orbital electron populations 1.20876 0.87131 1.04321 1.03864 1.22266 0.98755 0.88529 0.91318 1.22123 0.95579 0.99490 1.02340 1.21999 0.94691 0.97515 0.92722 1.19170 0.96080 0.93830 1.04690 1.21648 0.91695 1.00250 0.94005 1.21246 1.02269 0.91044 1.00411 1.21769 0.91324 1.01095 0.93336 1.19776 0.94607 0.91566 1.09126 1.17996 0.83109 0.82918 0.79393 1.90713 1.28617 1.82119 1.42919 1.48455 1.37000 1.12441 1.36620 1.22320 0.98829 0.82021 0.97320 1.22552 0.97125 0.97820 0.95036 0.91892 1.21543 1.02650 0.91898 1.02130 1.21449 0.95631 0.92157 0.84439 0.90138 1.42491 1.05217 1.86386 1.01871 1.19637 0.85759 1.40468 0.91458 0.89757 1.25545 1.00762 1.03355 0.96663 1.69827 1.31068 1.58224 1.02879 0.85254 0.80000 0.78304 0.76450 1.20118 1.22804 1.20225 1.23135 0.89647 1.01521 0.89572 1.18800 0.89597 0.92551 0.97583 1.67891 1.09108 1.30842 1.14799 0.89528 0.87009 0.92237 0.80446 0.79643 0.80481 0.81319 0.83778 0.91493 0.89369 0.91159 0.93297 0.91043 0.79530 0.94137 0.90218 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.15 71.24 0.72 -1.32 16 2 C 0.14 3.74 6.78 42.88 0.29 4.04 16 3 C -0.18 -3.15 9.64 22.13 0.21 -2.93 16 4 C -0.04 -0.75 9.89 22.52 0.22 -0.53 16 5 C -0.14 -3.30 5.74 -21.29 -0.12 -3.43 16 6 C -0.06 -1.05 9.75 22.37 0.22 -0.83 16 7 C -0.13 -2.62 9.93 21.98 0.22 -2.40 16 8 C -0.06 -1.49 8.41 22.54 0.19 -1.30 16 9 C -0.15 -5.11 5.42 -19.86 -0.11 -5.22 16 10 C 0.58 22.75 7.18 86.67 0.62 23.37 16 11 O -0.56 -25.70 16.59 -4.06 -0.07 -25.77 16 12 N -0.61 -22.00 3.33 -815.62 -2.71 -24.71 16 13 C 0.12 3.75 6.40 86.86 0.56 4.31 16 14 C -0.11 -3.48 3.27 -9.40 -0.03 -3.52 16 15 H 0.06 2.34 8.01 -2.39 -0.02 2.32 16 16 C -0.12 -3.48 9.30 71.98 0.67 -2.81 16 17 C 0.17 6.53 3.08 46.18 0.14 6.67 16 18 H 0.08 2.87 7.96 -2.39 -0.02 2.85 16 19 N -0.72 -34.62 5.15 -317.31 -1.64 -36.26 16 20 C -0.24 -12.58 9.96 84.03 0.84 -11.74 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 23 N -0.97 -58.02 13.06 21.65 0.28 -57.73 16 24 Si 0.97 44.17 29.55 68.60 2.03 46.19 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 28 C 0.09 3.13 5.66 86.73 0.49 3.62 16 29 C 0.14 4.64 6.59 40.62 0.27 4.91 16 30 N -0.52 -18.50 9.16 -176.10 -1.61 -20.11 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 1.29 8.07 -2.39 -0.02 1.27 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.14 3.52 6.08 -2.91 -0.02 3.50 16 39 H 0.07 2.23 7.99 -2.39 -0.02 2.22 16 40 H 0.09 2.43 8.04 -2.39 -0.02 2.41 16 41 H 0.07 1.73 8.11 -2.39 -0.02 1.71 16 42 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.37 19.83 7.76 -92.71 -0.72 19.12 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.08 2.53 5.73 -2.39 -0.01 2.52 16 47 H 0.04 1.75 8.03 -2.39 -0.02 1.73 16 Total: -1.00 -79.05 387.50 2.42 -76.63 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.27 Total: 34.29 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 5.87 Total: 7.46 kcal Atomic # 7 Polarization: -133.14 SS G_CDS: -5.68 Total: -138.81 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.07 Total: -25.77 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -79.05 2.42 -76.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054773187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.140 kcal (2) G-P(sol) polarization free energy of solvation -79.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds