Wall clock time and date at job start Tue Mar 31 2020 22:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36542 * 120.87634 * 2 1 4 4 C 1.40239 * 119.81478 * 180.25025 * 3 2 1 5 5 C 1.48280 * 119.23659 * 179.73855 * 4 3 2 6 6 O 1.21496 * 119.99812 * 359.72480 * 5 4 3 7 7 N 1.34773 * 119.99863 * 179.73100 * 5 4 3 8 8 C 1.47418 * 125.64700 * 180.02562 * 7 5 4 9 9 C 1.54915 * 104.83107 * 204.07770 * 8 7 5 10 10 H 1.09002 * 111.00539 * 81.06145 * 9 8 7 11 11 C 1.53001 * 111.03575 * 204.90180 * 9 8 7 12 12 C 1.55154 * 101.58176 * 322.98725 * 9 8 7 13 13 H 1.08997 * 110.72125 * 276.96414 * 12 9 8 14 14 N 1.46497 * 110.72310 * 153.86360 * 12 9 8 15 15 C 1.36936 * 120.00157 * 155.00099 * 14 12 9 16 16 H 1.07999 * 120.00237 * 0.02562 * 15 14 12 17 17 C 1.38814 * 120.00050 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99959 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00110 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47272 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47249 * 120.00247 * 19 17 15 22 22 H 1.48507 * 109.47259 * 240.00244 * 19 17 15 23 23 C 1.47029 * 125.64802 * 359.96907 * 7 5 4 24 24 N 1.31906 * 121.52335 * 359.45647 * 4 3 2 25 25 C 1.33241 * 121.29897 * 0.25838 * 24 4 3 26 26 C 1.40831 * 120.99986 * 180.02562 * 25 24 4 27 27 C 1.35998 * 119.73690 * 179.97438 * 26 25 24 28 28 C 1.39443 * 121.08948 * 359.97438 * 27 26 25 29 29 C 1.36133 * 120.91907 * 0.03545 * 28 27 26 30 30 C 1.40429 * 119.64448 * 359.96886 * 29 28 27 31 31 H 1.09000 * 109.47137 * 270.30025 * 1 2 3 32 32 H 1.09000 * 109.47306 * 30.30632 * 1 2 3 33 33 H 1.09004 * 109.46569 * 150.30798 * 1 2 3 34 34 H 1.08001 * 120.08833 * 359.96589 * 3 2 1 35 35 H 1.08995 * 110.37279 * 85.24185 * 8 7 5 36 36 H 1.08997 * 110.36990 * 322.91383 * 8 7 5 37 37 H 1.09000 * 109.47012 * 175.39412 * 11 9 8 38 38 H 1.08999 * 109.46864 * 295.38705 * 11 9 8 39 39 H 1.08992 * 109.47148 * 55.39463 * 11 9 8 40 40 H 0.96996 * 119.99952 * 335.00231 * 14 12 9 41 41 H 0.97004 * 120.00137 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.88066 * 59.57140 * 23 7 5 43 43 H 1.08996 * 110.00664 * 298.48127 * 23 7 5 44 44 H 1.08000 * 120.12987 * 359.95202 * 26 25 24 45 45 H 1.07990 * 119.45608 * 179.97438 * 27 26 25 46 46 H 1.07993 * 119.53961 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.17711 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1719 0.0000 4 6 3.6098 1.1459 -0.0053 5 6 4.3579 2.4262 -0.0112 6 8 3.7558 3.4815 -0.0163 7 7 5.7056 2.4192 -0.0108 8 6 6.5710 3.6126 -0.0157 9 6 7.9108 3.1285 -0.6243 10 1 7.8571 3.0977 -1.7126 11 6 9.0741 4.0071 -0.1601 12 6 8.0231 1.6987 -0.0324 13 1 8.4409 1.7296 0.9738 14 7 8.8319 0.8400 -0.9012 15 6 9.4812 -0.2461 -0.3780 16 1 9.3969 -0.4699 0.6752 17 6 10.2480 -1.0593 -1.2011 18 7 10.3512 -0.7862 -2.4845 19 14 11.1344 -2.5404 -0.4872 20 1 10.8594 -2.6271 0.9696 21 1 10.6522 -3.7757 -1.1558 22 1 12.5959 -2.3965 -0.7078 23 6 6.5563 1.2200 -0.0044 24 7 4.2786 0.0090 0.0003 25 6 3.6482 -1.1649 0.0061 26 6 4.3685 -2.3750 0.0127 27 6 3.6988 -3.5586 0.0191 28 6 2.3049 -3.5973 0.0198 29 6 1.5733 -2.4493 0.0135 30 6 2.2293 -1.2076 0.0067 31 1 -0.3633 0.0054 1.0276 32 1 -0.3634 0.8872 -0.5186 33 1 -0.3632 -0.8928 -0.5091 34 1 1.6835 2.1162 -0.0006 35 1 6.7249 3.9739 1.0011 36 1 6.1339 4.3956 -0.6353 37 1 10.0116 3.5969 -0.5357 38 1 8.9409 5.0187 -0.5435 39 1 9.0988 4.0316 0.9292 40 1 8.9074 1.0409 -1.8472 41 1 10.8873 -1.3543 -3.0597 42 1 6.3475 0.6127 -0.8850 43 1 6.3735 0.6379 0.8989 44 1 5.4484 -2.3631 0.0122 45 1 4.2557 -4.4839 0.0236 46 1 1.7987 -4.5512 0.0254 47 1 0.4942 -2.4932 0.0137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054813016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:08 Heat of formation + Delta-G solvation = 39.037669 kcal Electronic energy + Delta-G solvation = -29327.311441 eV Core-core repulsion = 25475.236470 eV Total energy + Delta-G solvation = -3852.074971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.16370 -39.62211 -37.69538 -36.80917 -34.94614 -34.00237 -32.42246 -30.84444 -30.59251 -30.43591 -28.01800 -27.45557 -26.63751 -24.47319 -23.79267 -23.57783 -21.77880 -21.04130 -19.90326 -19.56088 -18.05945 -17.71771 -17.10898 -16.72827 -15.87846 -15.73746 -15.24556 -14.91012 -14.67089 -14.39502 -14.28732 -13.99541 -13.50220 -13.49540 -13.29639 -13.20047 -13.08591 -12.91311 -12.57962 -12.38947 -12.34908 -12.11221 -11.71154 -11.66909 -11.51361 -11.43265 -11.10812 -10.98412 -10.71332 -10.56803 -10.31422 -10.20866 -10.10864 -9.88829 -9.70597 -9.40932 -8.90267 -8.89795 -8.31128 -8.24296 -7.02778 -5.81107 -3.10745 0.14464 0.60153 1.85721 2.40746 3.13075 3.30377 3.40076 3.46499 3.48359 4.04251 4.07693 4.34072 4.47485 4.56178 4.61070 4.70830 4.91751 4.99735 5.05871 5.13025 5.23896 5.26181 5.27950 5.29319 5.34976 5.52226 5.61866 5.67362 5.73185 5.83202 5.85862 5.91356 5.94927 5.97785 5.99316 6.06650 6.26250 6.27475 6.32254 6.33995 6.41670 6.53668 6.62317 6.66981 6.70338 6.76524 7.02148 7.67185 7.68965 7.81064 8.31635 8.36726 9.48335 10.03314 10.38533 11.41096 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009108 B = 0.004226 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.623488 B = 6624.707228 C = 9422.041685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.037 4.037 3 C -0.128 4.128 4 C 0.122 3.878 5 C 0.576 3.424 6 O -0.549 6.549 7 N -0.589 5.589 8 C 0.112 3.888 9 C -0.116 4.116 10 H 0.083 0.917 11 C -0.132 4.132 12 C 0.171 3.829 13 H 0.067 0.933 14 N -0.710 5.710 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.904 3.096 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.091 3.909 24 N -0.426 5.426 25 C 0.125 3.875 26 C -0.075 4.075 27 C -0.110 4.110 28 C -0.106 4.106 29 C -0.109 4.109 30 C -0.086 4.086 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.147 0.853 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.146 0.854 45 H 0.132 0.868 46 H 0.127 0.873 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.124 0.020 5.653 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.149 4.149 4 C -0.032 4.032 5 C 0.363 3.637 6 O -0.428 6.428 7 N -0.320 5.320 8 C -0.011 4.011 9 C -0.136 4.136 10 H 0.101 0.899 11 C -0.190 4.190 12 C 0.059 3.941 13 H 0.085 0.915 14 N -0.349 5.349 15 C -0.372 4.372 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.736 3.264 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.035 4.035 24 N -0.137 5.137 25 C 0.002 3.998 26 C -0.093 4.093 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.128 4.128 30 C -0.088 4.088 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.165 0.835 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.164 0.836 45 H 0.150 0.850 46 H 0.145 0.855 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.453 0.359 5.748 18.378 hybrid contribution -0.334 -0.993 -0.043 1.049 sum -17.787 -0.635 5.705 18.690 Atomic orbital electron populations 1.20840 0.89658 1.03616 1.03104 1.20078 0.96726 0.91706 0.96020 1.21556 0.93575 0.99477 1.00293 1.21254 0.91384 0.92285 0.98276 1.17576 0.81105 0.87288 0.77705 1.90735 1.68192 1.31364 1.52497 1.48400 1.04268 1.10214 1.69096 1.22343 0.89885 0.87953 1.00871 1.22673 0.93015 0.97017 1.00888 0.89867 1.21594 0.98354 0.98226 1.00789 1.21379 0.89178 0.88314 0.95224 0.91526 1.42335 1.55212 1.29514 1.07883 1.19289 1.22193 1.02130 0.93617 0.90985 1.24728 1.00818 0.99470 0.95537 1.69672 1.44420 1.40203 1.03483 0.86160 0.79379 0.82812 0.78085 1.20492 1.21880 1.21884 1.23403 0.91262 0.85909 1.02895 1.68288 1.38940 0.97230 1.09266 1.18961 0.89598 0.92321 0.98969 1.21084 1.01338 0.89836 0.97063 1.20960 0.94332 0.98296 0.99360 1.20995 0.94214 0.98441 0.98751 1.20965 0.99928 0.91166 1.00747 1.18847 0.94004 0.94265 1.01727 0.90223 0.90527 0.90728 0.83507 0.91361 0.90789 0.91341 0.93266 0.92862 0.77954 0.93511 0.89977 0.91629 0.83650 0.85024 0.85545 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.59 36.01 0.35 -0.52 16 2 C -0.04 -0.44 5.92 -104.30 -0.62 -1.05 16 3 C -0.13 -1.76 9.23 -39.44 -0.36 -2.12 16 4 C 0.12 2.01 6.72 -82.95 -0.56 1.45 16 5 C 0.58 10.35 7.84 -12.13 -0.10 10.25 16 6 O -0.55 -10.57 16.54 5.37 0.09 -10.48 16 7 N -0.59 -10.33 3.33 -171.47 -0.57 -10.90 16 8 C 0.11 1.75 6.38 -2.53 -0.02 1.73 16 9 C -0.12 -1.89 3.27 -88.47 -0.29 -2.18 16 10 H 0.08 1.44 8.01 -51.93 -0.42 1.03 16 11 C -0.13 -1.90 9.29 37.16 0.35 -1.55 16 12 C 0.17 3.30 3.09 -66.10 -0.20 3.10 16 13 H 0.07 1.29 7.99 -51.93 -0.41 0.88 16 14 N -0.71 -16.90 5.15 -51.65 -0.27 -17.16 16 15 C -0.24 -6.36 9.96 -15.06 -0.15 -6.51 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 19 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 C 0.09 1.70 5.14 -3.06 -0.02 1.68 16 24 N -0.43 -7.23 6.76 -7.54 -0.05 -7.28 16 25 C 0.12 1.90 6.61 -84.85 -0.56 1.34 16 26 C -0.07 -1.04 9.99 -39.41 -0.39 -1.44 16 27 C -0.11 -1.20 9.94 -39.94 -0.40 -1.60 16 28 C -0.11 -1.00 9.96 -39.89 -0.40 -1.40 16 29 C -0.11 -1.09 9.31 -39.51 -0.37 -1.46 16 30 C -0.09 -1.10 5.75 -106.71 -0.61 -1.71 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.07 0.46 6.51 -51.93 -0.34 0.12 16 34 H 0.15 1.84 7.60 -52.49 -0.40 1.44 16 35 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 36 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 40 H 0.39 9.90 7.76 -40.82 -0.32 9.58 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.08 1.73 7.29 -51.93 -0.38 1.35 16 43 H 0.07 1.25 7.52 -51.93 -0.39 0.86 16 44 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 45 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.13 0.92 6.43 -52.49 -0.34 0.58 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -31.46 385.31 -10.49 -41.94 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.75 Total: 10.25 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -4.44 Total: -2.35 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.16 Total: -61.80 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.46 -10.49 -41.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054813016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.980 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds