Wall clock time and date at job start Tue Mar 31 2020 22:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36542 * 120.87634 * 2 1 4 4 C 1.40239 * 119.81478 * 180.25025 * 3 2 1 5 5 C 1.48280 * 119.23659 * 179.73855 * 4 3 2 6 6 O 1.21496 * 119.99812 * 359.72480 * 5 4 3 7 7 N 1.34773 * 119.99863 * 179.73100 * 5 4 3 8 8 C 1.47418 * 125.64700 * 180.02562 * 7 5 4 9 9 C 1.54915 * 104.83107 * 204.07770 * 8 7 5 10 10 H 1.09002 * 111.00539 * 81.06145 * 9 8 7 11 11 C 1.53001 * 111.03575 * 204.90180 * 9 8 7 12 12 C 1.55154 * 101.58176 * 322.98725 * 9 8 7 13 13 H 1.08997 * 110.72125 * 276.96414 * 12 9 8 14 14 N 1.46497 * 110.72310 * 153.86360 * 12 9 8 15 15 C 1.36936 * 120.00157 * 155.00099 * 14 12 9 16 16 H 1.07999 * 120.00237 * 0.02562 * 15 14 12 17 17 C 1.38814 * 120.00050 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99959 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00110 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47272 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47249 * 120.00247 * 19 17 15 22 22 H 1.48507 * 109.47259 * 240.00244 * 19 17 15 23 23 C 1.47029 * 125.64802 * 359.96907 * 7 5 4 24 24 N 1.31906 * 121.52335 * 359.45647 * 4 3 2 25 25 C 1.33241 * 121.29897 * 0.25838 * 24 4 3 26 26 C 1.40831 * 120.99986 * 180.02562 * 25 24 4 27 27 C 1.35998 * 119.73690 * 179.97438 * 26 25 24 28 28 C 1.39443 * 121.08948 * 359.97438 * 27 26 25 29 29 C 1.36133 * 120.91907 * 0.03545 * 28 27 26 30 30 C 1.40429 * 119.64448 * 359.96886 * 29 28 27 31 31 H 1.09000 * 109.47137 * 270.30025 * 1 2 3 32 32 H 1.09000 * 109.47306 * 30.30632 * 1 2 3 33 33 H 1.09004 * 109.46569 * 150.30798 * 1 2 3 34 34 H 1.08001 * 120.08833 * 359.96589 * 3 2 1 35 35 H 1.08995 * 110.37279 * 85.24185 * 8 7 5 36 36 H 1.08997 * 110.36990 * 322.91383 * 8 7 5 37 37 H 1.09000 * 109.47012 * 175.39412 * 11 9 8 38 38 H 1.08999 * 109.46864 * 295.38705 * 11 9 8 39 39 H 1.08992 * 109.47148 * 55.39463 * 11 9 8 40 40 H 0.96996 * 119.99952 * 335.00231 * 14 12 9 41 41 H 0.97004 * 120.00137 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.88066 * 59.57140 * 23 7 5 43 43 H 1.08996 * 110.00664 * 298.48127 * 23 7 5 44 44 H 1.08000 * 120.12987 * 359.95202 * 26 25 24 45 45 H 1.07990 * 119.45608 * 179.97438 * 27 26 25 46 46 H 1.07993 * 119.53961 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.17711 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1719 0.0000 4 6 3.6098 1.1459 -0.0053 5 6 4.3579 2.4262 -0.0112 6 8 3.7558 3.4815 -0.0163 7 7 5.7056 2.4192 -0.0108 8 6 6.5710 3.6126 -0.0157 9 6 7.9108 3.1285 -0.6243 10 1 7.8571 3.0977 -1.7126 11 6 9.0741 4.0071 -0.1601 12 6 8.0231 1.6987 -0.0324 13 1 8.4409 1.7296 0.9738 14 7 8.8319 0.8400 -0.9012 15 6 9.4812 -0.2461 -0.3780 16 1 9.3969 -0.4699 0.6752 17 6 10.2480 -1.0593 -1.2011 18 7 10.3512 -0.7862 -2.4845 19 14 11.1344 -2.5404 -0.4872 20 1 10.8594 -2.6271 0.9696 21 1 10.6522 -3.7757 -1.1558 22 1 12.5959 -2.3965 -0.7078 23 6 6.5563 1.2200 -0.0044 24 7 4.2786 0.0090 0.0003 25 6 3.6482 -1.1649 0.0061 26 6 4.3685 -2.3750 0.0127 27 6 3.6988 -3.5586 0.0191 28 6 2.3049 -3.5973 0.0198 29 6 1.5733 -2.4493 0.0135 30 6 2.2293 -1.2076 0.0067 31 1 -0.3633 0.0054 1.0276 32 1 -0.3634 0.8872 -0.5186 33 1 -0.3632 -0.8928 -0.5091 34 1 1.6835 2.1162 -0.0006 35 1 6.7249 3.9739 1.0011 36 1 6.1339 4.3956 -0.6353 37 1 10.0116 3.5969 -0.5357 38 1 8.9409 5.0187 -0.5435 39 1 9.0988 4.0316 0.9292 40 1 8.9074 1.0409 -1.8472 41 1 10.8873 -1.3543 -3.0597 42 1 6.3475 0.6127 -0.8850 43 1 6.3735 0.6379 0.8989 44 1 5.4484 -2.3631 0.0122 45 1 4.2557 -4.4839 0.0236 46 1 1.7987 -4.5512 0.0254 47 1 0.4942 -2.4932 0.0137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054813016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:07 Heat of formation + Delta-G solvation = 20.960465 kcal Electronic energy + Delta-G solvation = -29328.095328 eV Core-core repulsion = 25475.236470 eV Total energy + Delta-G solvation = -3852.858857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.22275 -40.95672 -39.09806 -37.87144 -36.02279 -35.71805 -33.91577 -32.52146 -31.77043 -31.32884 -29.16568 -28.80211 -27.87676 -25.97003 -25.31191 -24.55196 -23.13981 -22.16173 -21.41822 -20.80335 -19.15583 -19.01974 -18.81049 -17.89301 -17.27789 -17.11089 -16.50794 -16.29826 -15.81439 -15.59824 -15.37285 -15.33382 -15.15096 -14.69011 -14.54401 -14.36315 -14.10604 -14.00685 -13.89429 -13.72940 -13.50694 -13.02175 -13.00384 -12.87862 -12.84550 -12.71168 -12.61182 -12.35344 -12.18130 -12.12103 -12.03747 -11.69238 -11.53312 -11.35223 -11.20764 -11.00033 -10.43876 -9.94942 -9.66134 -9.23675 -9.03358 -7.93081 -5.22547 -0.86623 -0.38318 0.89039 1.29607 1.48563 1.49000 1.58964 1.80743 2.16147 2.56740 2.87992 3.04005 3.35650 3.41338 3.49483 3.65171 3.73007 3.81316 3.81888 3.92959 4.11495 4.18657 4.22072 4.29442 4.38155 4.45091 4.46211 4.49669 4.59810 4.65049 4.67381 4.76986 4.89765 4.97139 4.97732 5.00142 5.10753 5.11417 5.13025 5.18602 5.24523 5.33898 5.39311 5.43068 5.48592 5.51990 5.55695 5.84996 6.26468 6.33373 6.59177 6.96494 7.34624 8.05483 8.30936 9.30217 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009108 B = 0.004226 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.623488 B = 6624.707228 C = 9422.041685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 C -0.146 4.146 4 C 0.096 3.904 5 C 0.573 3.427 6 O -0.566 6.566 7 N -0.594 5.594 8 C 0.114 3.886 9 C -0.105 4.105 10 H 0.070 0.930 11 C -0.125 4.125 12 C 0.167 3.833 13 H 0.070 0.930 14 N -0.719 5.719 15 C -0.237 4.237 16 H 0.077 0.923 17 C -0.069 4.069 18 N -0.968 5.968 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.294 1.294 23 C 0.116 3.884 24 N -0.461 5.461 25 C 0.098 3.902 26 C -0.115 4.115 27 C -0.094 4.094 28 C -0.101 4.101 29 C -0.099 4.099 30 C -0.099 4.099 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.374 0.626 41 H 0.250 0.750 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.119 0.881 45 H 0.153 0.847 46 H 0.169 0.831 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.981 -1.163 6.929 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.029 4.029 3 C -0.167 4.167 4 C -0.057 4.057 5 C 0.361 3.639 6 O -0.446 6.446 7 N -0.324 5.324 8 C -0.008 4.008 9 C -0.125 4.125 10 H 0.088 0.912 11 C -0.182 4.182 12 C 0.056 3.944 13 H 0.088 0.912 14 N -0.357 5.357 15 C -0.369 4.369 16 H 0.095 0.905 17 C -0.261 4.261 18 N -0.618 5.618 19 Si 0.797 3.203 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.222 1.222 23 C -0.010 4.010 24 N -0.173 5.173 25 C -0.025 4.025 26 C -0.133 4.133 27 C -0.114 4.114 28 C -0.119 4.119 29 C -0.117 4.117 30 C -0.102 4.102 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.172 0.828 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.137 0.863 45 H 0.171 0.829 46 H 0.186 0.814 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -20.330 -0.795 7.068 21.538 hybrid contribution 0.423 -0.707 -0.417 0.923 sum -19.907 -1.502 6.651 21.043 Atomic orbital electron populations 1.21000 0.86008 1.05272 1.04735 1.20574 0.98980 0.90377 0.92956 1.21658 0.92434 1.00826 1.01800 1.21227 0.92596 0.91566 1.00289 1.17921 0.81057 0.87916 0.76994 1.90699 1.68380 1.32105 1.53394 1.48436 1.04501 1.10212 1.69296 1.22449 0.88843 0.87407 1.02059 1.22569 0.94569 0.95330 1.00008 0.91200 1.21545 0.96122 0.98902 1.01676 1.21545 0.88530 0.89503 0.94823 0.91188 1.42429 1.55783 1.29746 1.07763 1.19627 1.21117 1.02345 0.93769 0.90535 1.25473 1.02362 1.02368 0.95900 1.69825 1.45801 1.41437 1.04746 0.85160 0.77724 0.79379 0.78030 1.18998 1.22201 1.22177 1.22879 0.91041 0.85976 1.01119 1.68146 1.40288 0.98088 1.10769 1.19284 0.91381 0.91874 0.99997 1.21036 1.00428 0.91119 1.00756 1.21321 0.95715 0.97749 0.96593 1.21461 0.93226 1.00232 0.96933 1.21437 1.01900 0.89770 0.98623 1.19161 0.92976 0.96215 1.01806 0.88284 0.89519 0.88482 0.82813 0.89417 0.90003 0.93351 0.90631 0.91467 0.79348 0.94103 0.92873 0.92474 0.86320 0.82908 0.81354 0.81183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.59 71.24 0.68 -0.58 16 2 C -0.02 -0.45 5.92 -19.66 -0.12 -0.57 16 3 C -0.15 -4.04 9.23 22.36 0.21 -3.84 16 4 C 0.10 3.32 6.72 42.29 0.28 3.60 16 5 C 0.57 21.43 7.84 86.92 0.68 22.11 16 6 O -0.57 -22.22 16.54 -3.70 -0.06 -22.28 16 7 N -0.59 -21.65 3.33 -814.72 -2.71 -24.36 16 8 C 0.11 3.54 6.38 86.86 0.55 4.10 16 9 C -0.10 -3.47 3.27 -9.40 -0.03 -3.50 16 10 H 0.07 2.51 8.01 -2.39 -0.02 2.49 16 11 C -0.12 -3.49 9.29 71.98 0.67 -2.82 16 12 C 0.17 6.65 3.09 46.18 0.14 6.79 16 13 H 0.07 2.76 7.99 -2.39 -0.02 2.74 16 14 N -0.72 -35.73 5.15 -317.34 -1.63 -37.36 16 15 C -0.24 -12.85 9.96 84.03 0.84 -12.02 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 18 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 19 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 C 0.12 4.61 5.14 86.73 0.45 5.05 16 24 N -0.46 -16.80 6.76 -177.77 -1.20 -18.00 16 25 C 0.10 3.11 6.61 40.48 0.27 3.37 16 26 C -0.11 -3.36 9.99 22.38 0.22 -3.14 16 27 C -0.09 -1.93 9.94 22.04 0.22 -1.71 16 28 C -0.10 -1.51 9.96 22.07 0.22 -1.29 16 29 C -0.10 -1.59 9.31 22.31 0.21 -1.38 16 30 C -0.10 -2.40 5.75 -21.22 -0.12 -2.53 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.85 8.10 -2.39 -0.02 0.83 16 33 H 0.10 0.67 6.51 -2.39 -0.02 0.66 16 34 H 0.15 3.86 7.60 -2.91 -0.02 3.84 16 35 H 0.09 2.40 8.03 -2.39 -0.02 2.38 16 36 H 0.08 2.44 8.04 -2.39 -0.02 2.43 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 40 H 0.37 20.22 7.76 -92.71 -0.72 19.50 16 41 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.05 2.43 7.29 -2.39 -0.02 2.42 16 43 H 0.06 2.34 7.52 -2.39 -0.02 2.32 16 44 H 0.12 3.95 8.06 -2.91 -0.02 3.92 16 45 H 0.15 2.39 8.06 -2.92 -0.02 2.36 16 46 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 47 H 0.17 1.35 6.43 -2.91 -0.02 1.33 16 Total: -1.00 -72.67 385.31 2.81 -69.86 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.27 Total: 34.65 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.84 Total: 8.27 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -5.26 Total: -137.99 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.06 Total: -22.28 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.67 2.81 -69.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054813016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.817 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds