Wall clock time and date at job start Tue Mar 31 2020 22:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36541 * 120.87972 * 2 1 4 4 C 1.40235 * 119.81804 * 179.97438 * 3 2 1 5 5 C 1.48274 * 119.23821 * 180.02562 * 4 3 2 6 6 O 1.21505 * 119.99899 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99772 * 180.02562 * 5 4 3 8 8 C 1.47025 * 125.64502 * 179.97438 * 7 5 4 9 9 C 1.54327 * 107.27105 * 178.97339 * 8 7 5 10 10 H 1.08999 * 110.72110 * 96.34588 * 9 8 7 11 11 C 1.52997 * 110.72340 * 219.44464 * 9 8 7 12 12 C 1.55163 * 102.94086 * 337.81105 * 9 8 7 13 13 H 1.08995 * 111.00334 * 153.57629 * 12 9 8 14 14 N 1.46498 * 110.99931 * 277.42443 * 12 9 8 15 15 C 1.36946 * 119.99888 * 205.00244 * 14 12 9 16 16 H 1.08000 * 119.99550 * 359.97438 * 15 14 12 17 17 C 1.38804 * 119.99745 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00717 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99700 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47247 * 59.99712 * 19 17 15 21 21 H 1.48503 * 109.47032 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46910 * 299.99532 * 19 17 15 23 23 C 1.47421 * 125.65319 * 0.04076 * 7 5 4 24 24 N 1.31908 * 121.52211 * 0.27613 * 4 3 2 25 25 C 1.33242 * 121.29814 * 359.44130 * 24 4 3 26 26 C 1.40827 * 120.99690 * 180.27753 * 25 24 4 27 27 C 1.35994 * 119.74004 * 180.31768 * 26 25 24 28 28 C 1.39450 * 121.08536 * 359.95618 * 27 26 25 29 29 C 1.36127 * 120.91934 * 0.02562 * 28 27 26 30 30 C 1.40433 * 119.64674 * 0.02562 * 29 28 27 31 31 H 1.08994 * 109.47734 * 89.99643 * 1 2 3 32 32 H 1.09006 * 109.46790 * 209.99932 * 1 2 3 33 33 H 1.08996 * 109.46925 * 329.98751 * 1 2 3 34 34 H 1.08004 * 120.08862 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.88484 * 59.56157 * 8 7 5 36 36 H 1.08998 * 110.01061 * 298.46090 * 8 7 5 37 37 H 1.09002 * 109.47153 * 58.54532 * 11 9 8 38 38 H 1.09001 * 109.46832 * 298.54723 * 11 9 8 39 39 H 1.09004 * 109.47261 * 178.54704 * 11 9 8 40 40 H 0.96995 * 120.00220 * 25.00160 * 14 12 9 41 41 H 0.96996 * 120.00457 * 179.97438 * 18 17 15 42 42 H 1.09007 * 110.36440 * 322.93039 * 23 7 5 43 43 H 1.08996 * 110.37385 * 85.14226 * 23 7 5 44 44 H 1.08007 * 120.12977 * 0.27390 * 26 25 24 45 45 H 1.07994 * 119.45596 * 179.97438 * 27 26 25 46 46 H 1.08003 * 119.53482 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.17515 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1459 0.0005 5 6 4.3579 2.4261 0.0011 6 8 3.7559 3.4815 0.0006 7 7 5.7057 2.4190 0.0011 8 6 6.5688 3.6092 0.0011 9 6 8.0306 3.1152 0.0275 10 1 8.4467 3.0878 -0.9795 11 6 8.8841 3.9983 0.9399 12 6 7.9030 1.6835 0.6119 13 1 8.7250 1.0505 0.2779 14 7 7.8305 1.7181 2.0747 15 6 8.2219 0.6281 2.8056 16 1 8.5835 -0.2571 2.3036 17 6 8.1527 0.6607 4.1916 18 7 7.7115 1.7393 4.8034 19 14 8.6859 -0.8264 5.1885 20 1 10.1130 -1.1250 4.9074 21 1 8.5165 -0.5388 6.6356 22 1 7.8522 -1.9973 4.8152 23 6 6.5586 1.2166 -0.0003 24 7 4.2786 0.0089 -0.0044 25 6 3.6481 -1.1650 0.0011 26 6 4.3684 -2.3751 0.0016 27 6 3.6988 -3.5587 0.0007 28 6 2.3049 -3.5974 0.0000 29 6 1.5733 -2.4494 -0.0002 30 6 2.2293 -1.2077 -0.0003 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3633 0.8898 0.5140 34 1 1.6836 2.1162 0.0004 35 1 6.3660 4.2142 0.8848 36 1 6.3926 4.1977 -0.8993 37 1 8.4687 3.9881 1.9476 38 1 8.8869 5.0193 0.5583 39 1 9.9048 3.6165 0.9638 40 1 7.5054 2.5130 2.5256 41 1 7.6629 1.7619 5.7719 42 1 6.1130 0.4347 0.6148 43 1 6.7076 0.8582 -1.0188 44 1 5.4485 -2.3631 0.0021 45 1 4.2558 -4.4840 0.0007 46 1 1.7987 -4.5515 -0.0003 47 1 0.4942 -2.4934 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054813021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:13 Heat of formation + Delta-G solvation = 44.945103 kcal Electronic energy + Delta-G solvation = -29732.037552 eV Core-core repulsion = 25880.218747 eV Total energy + Delta-G solvation = -3851.818805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.10798 -39.54805 -37.69053 -36.74803 -34.89947 -33.78043 -32.29178 -30.76007 -30.42654 -30.35742 -27.96240 -27.66295 -26.49610 -24.35039 -23.73750 -23.56285 -22.04889 -21.11546 -19.55245 -19.16734 -18.00185 -17.76964 -17.33134 -16.51607 -15.82581 -15.56265 -15.17417 -14.79450 -14.60724 -14.47301 -14.21237 -13.99566 -13.65334 -13.46322 -13.21507 -13.10729 -12.90398 -12.87732 -12.59506 -12.32701 -12.09621 -11.93516 -11.71396 -11.66415 -11.45730 -11.32307 -11.06179 -10.87778 -10.66938 -10.43293 -10.27449 -10.25663 -10.02492 -9.81281 -9.57874 -9.26836 -8.85914 -8.83521 -8.27445 -8.11961 -6.94983 -5.76769 -3.05489 0.19584 0.65983 1.89907 2.48602 3.25821 3.41664 3.43078 3.47531 3.48745 4.09330 4.16440 4.39232 4.56256 4.58325 4.66488 4.73703 4.97359 5.03266 5.09264 5.20203 5.28232 5.30272 5.33672 5.38284 5.40553 5.58380 5.64853 5.73370 5.77187 5.87438 5.90537 5.94602 5.99662 6.00730 6.09993 6.27810 6.32361 6.33397 6.34983 6.41757 6.44522 6.49509 6.67799 6.74317 6.75591 7.00413 7.09195 7.69365 7.75006 7.94289 8.41126 8.46975 9.52655 10.09127 10.43839 11.45527 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009120 B = 0.004457 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.435161 B = 6280.951215 C = 8144.032765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.036 4.036 3 C -0.127 4.127 4 C 0.131 3.869 5 C 0.577 3.423 6 O -0.549 6.549 7 N -0.577 5.577 8 C 0.114 3.886 9 C -0.116 4.116 10 H 0.078 0.922 11 C -0.132 4.132 12 C 0.167 3.833 13 H 0.073 0.927 14 N -0.708 5.708 15 C -0.240 4.240 16 H 0.071 0.929 17 C -0.009 4.009 18 N -0.931 5.931 19 Si 0.904 3.096 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.287 1.287 23 C 0.072 3.928 24 N -0.428 5.428 25 C 0.125 3.875 26 C -0.077 4.077 27 C -0.109 4.109 28 C -0.110 4.110 29 C -0.106 4.106 30 C -0.088 4.088 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.111 0.889 43 H 0.053 0.947 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.924 -6.648 -13.471 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.044 4.044 3 C -0.148 4.148 4 C -0.023 4.023 5 C 0.364 3.636 6 O -0.428 6.428 7 N -0.307 5.307 8 C -0.008 4.008 9 C -0.136 4.136 10 H 0.097 0.903 11 C -0.189 4.189 12 C 0.054 3.946 13 H 0.091 0.909 14 N -0.348 5.348 15 C -0.371 4.371 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.736 3.264 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.054 4.054 24 N -0.139 5.139 25 C 0.002 3.998 26 C -0.096 4.096 27 C -0.129 4.129 28 C -0.128 4.128 29 C -0.124 4.124 30 C -0.090 4.090 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.221 0.779 41 H 0.065 0.935 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.295 -6.295 -13.362 18.005 hybrid contribution -0.721 -0.644 0.854 1.289 sum -11.016 -6.938 -12.509 18.054 Atomic orbital electron populations 1.20840 0.89663 1.03691 1.03027 1.20077 0.96732 0.91707 0.95914 1.21571 0.93618 0.99528 1.00092 1.21275 0.91408 0.92271 0.97302 1.17494 0.81085 0.87219 0.77833 1.90737 1.68205 1.31346 1.52489 1.48167 1.04149 1.09707 1.68689 1.22027 0.89600 0.87725 1.01445 1.22551 0.93396 0.97906 0.99747 0.90348 1.21608 0.99762 0.97155 1.00415 1.21454 0.93962 0.92820 0.86323 0.90916 1.42343 1.76829 1.17142 0.98492 1.19178 1.35656 0.93662 0.88628 0.91117 1.24714 1.01958 0.97349 0.96543 1.69647 1.52283 1.27536 1.08370 0.86314 0.78338 0.82387 0.79406 1.21228 1.21798 1.21340 1.23771 0.93181 0.88156 1.00285 1.68274 1.38528 0.97248 1.09897 1.18982 0.89682 0.92417 0.98704 1.20961 1.00890 0.89923 0.97799 1.20916 0.94389 0.98114 0.99496 1.20961 0.94196 0.98409 0.99249 1.20975 0.99948 0.91182 1.00307 1.18832 0.94024 0.94241 1.01893 0.90255 0.90738 0.90469 0.83455 0.91244 0.92139 0.90952 0.93863 0.92338 0.77875 0.93459 0.87117 0.92903 0.84126 0.85183 0.85605 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.59 36.00 0.35 -0.63 16 2 C -0.04 -0.46 5.92 -104.30 -0.62 -1.08 16 3 C -0.13 -1.92 9.23 -39.44 -0.36 -2.28 16 4 C 0.13 2.33 6.73 -82.96 -0.56 1.78 16 5 C 0.58 11.39 7.84 -12.13 -0.10 11.30 16 6 O -0.55 -11.69 16.61 5.36 0.09 -11.60 16 7 N -0.58 -10.95 3.33 -171.46 -0.57 -11.52 16 8 C 0.11 1.99 6.46 -3.06 -0.02 1.97 16 9 C -0.12 -1.88 3.42 -88.78 -0.30 -2.18 16 10 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.13 -2.16 8.80 37.16 0.33 -1.83 16 12 C 0.17 3.20 3.47 -65.77 -0.23 2.97 16 13 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 14 N -0.71 -17.06 4.56 -51.34 -0.23 -17.30 16 15 C -0.24 -6.43 9.96 -15.06 -0.15 -6.58 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 19 Si 0.90 22.18 29.55 -169.99 -5.02 17.16 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.07 1.32 5.62 -2.52 -0.01 1.31 16 24 N -0.43 -7.52 6.51 -7.54 -0.05 -7.57 16 25 C 0.13 1.95 6.61 -84.85 -0.56 1.39 16 26 C -0.08 -1.03 9.99 -39.41 -0.39 -1.43 16 27 C -0.11 -1.15 9.94 -39.94 -0.40 -1.55 16 28 C -0.11 -1.05 9.96 -39.89 -0.40 -1.44 16 29 C -0.11 -1.09 9.31 -39.51 -0.37 -1.46 16 30 C -0.09 -1.18 5.75 -106.71 -0.61 -1.79 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.52 6.51 -51.93 -0.34 0.18 16 33 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.15 2.07 7.60 -52.48 -0.40 1.67 16 35 H 0.07 1.31 7.82 -51.93 -0.41 0.90 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.41 6.34 -51.93 -0.33 1.08 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.39 10.15 6.32 -40.82 -0.26 9.89 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.11 2.31 5.88 -51.93 -0.31 2.00 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 47 H 0.13 0.98 6.43 -52.49 -0.34 0.64 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -32.75 381.27 -10.39 -43.14 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.57 Total: 11.05 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -4.50 Total: -1.90 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -0.13 Total: -63.59 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.75 -10.39 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054813021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.082 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds