Wall clock time and date at job start Tue Mar 31 2020 22:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36541 * 120.87972 * 2 1 4 4 C 1.40235 * 119.81804 * 179.97438 * 3 2 1 5 5 C 1.48274 * 119.23821 * 180.02562 * 4 3 2 6 6 O 1.21505 * 119.99899 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99772 * 180.02562 * 5 4 3 8 8 C 1.47025 * 125.64502 * 179.97438 * 7 5 4 9 9 C 1.54327 * 107.27105 * 178.97339 * 8 7 5 10 10 H 1.08999 * 110.72110 * 96.34588 * 9 8 7 11 11 C 1.52997 * 110.72340 * 219.44464 * 9 8 7 12 12 C 1.55163 * 102.94086 * 337.81105 * 9 8 7 13 13 H 1.08995 * 111.00334 * 153.57629 * 12 9 8 14 14 N 1.46498 * 110.99931 * 277.42443 * 12 9 8 15 15 C 1.36946 * 119.99888 * 205.00244 * 14 12 9 16 16 H 1.08000 * 119.99550 * 359.97438 * 15 14 12 17 17 C 1.38804 * 119.99745 * 180.02562 * 15 14 12 18 18 N 1.31618 * 120.00717 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99700 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47247 * 59.99712 * 19 17 15 21 21 H 1.48503 * 109.47032 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46910 * 299.99532 * 19 17 15 23 23 C 1.47421 * 125.65319 * 0.04076 * 7 5 4 24 24 N 1.31908 * 121.52211 * 0.27613 * 4 3 2 25 25 C 1.33242 * 121.29814 * 359.44130 * 24 4 3 26 26 C 1.40827 * 120.99690 * 180.27753 * 25 24 4 27 27 C 1.35994 * 119.74004 * 180.31768 * 26 25 24 28 28 C 1.39450 * 121.08536 * 359.95618 * 27 26 25 29 29 C 1.36127 * 120.91934 * 0.02562 * 28 27 26 30 30 C 1.40433 * 119.64674 * 0.02562 * 29 28 27 31 31 H 1.08994 * 109.47734 * 89.99643 * 1 2 3 32 32 H 1.09006 * 109.46790 * 209.99932 * 1 2 3 33 33 H 1.08996 * 109.46925 * 329.98751 * 1 2 3 34 34 H 1.08004 * 120.08862 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.88484 * 59.56157 * 8 7 5 36 36 H 1.08998 * 110.01061 * 298.46090 * 8 7 5 37 37 H 1.09002 * 109.47153 * 58.54532 * 11 9 8 38 38 H 1.09001 * 109.46832 * 298.54723 * 11 9 8 39 39 H 1.09004 * 109.47261 * 178.54704 * 11 9 8 40 40 H 0.96995 * 120.00220 * 25.00160 * 14 12 9 41 41 H 0.96996 * 120.00457 * 179.97438 * 18 17 15 42 42 H 1.09007 * 110.36440 * 322.93039 * 23 7 5 43 43 H 1.08996 * 110.37385 * 85.14226 * 23 7 5 44 44 H 1.08007 * 120.12977 * 0.27390 * 26 25 24 45 45 H 1.07994 * 119.45596 * 179.97438 * 27 26 25 46 46 H 1.08003 * 119.53482 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.17515 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1459 0.0005 5 6 4.3579 2.4261 0.0011 6 8 3.7559 3.4815 0.0006 7 7 5.7057 2.4190 0.0011 8 6 6.5688 3.6092 0.0011 9 6 8.0306 3.1152 0.0275 10 1 8.4467 3.0878 -0.9795 11 6 8.8841 3.9983 0.9399 12 6 7.9030 1.6835 0.6119 13 1 8.7250 1.0505 0.2779 14 7 7.8305 1.7181 2.0747 15 6 8.2219 0.6281 2.8056 16 1 8.5835 -0.2571 2.3036 17 6 8.1527 0.6607 4.1916 18 7 7.7115 1.7393 4.8034 19 14 8.6859 -0.8264 5.1885 20 1 10.1130 -1.1250 4.9074 21 1 8.5165 -0.5388 6.6356 22 1 7.8522 -1.9973 4.8152 23 6 6.5586 1.2166 -0.0003 24 7 4.2786 0.0089 -0.0044 25 6 3.6481 -1.1650 0.0011 26 6 4.3684 -2.3751 0.0016 27 6 3.6988 -3.5587 0.0007 28 6 2.3049 -3.5974 0.0000 29 6 1.5733 -2.4494 -0.0002 30 6 2.2293 -1.2077 -0.0003 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3633 0.8898 0.5140 34 1 1.6836 2.1162 0.0004 35 1 6.3660 4.2142 0.8848 36 1 6.3926 4.1977 -0.8993 37 1 8.4687 3.9881 1.9476 38 1 8.8869 5.0193 0.5583 39 1 9.9048 3.6165 0.9638 40 1 7.5054 2.5130 2.5256 41 1 7.6629 1.7619 5.7719 42 1 6.1130 0.4347 0.6148 43 1 6.7076 0.8582 -1.0188 44 1 5.4485 -2.3631 0.0021 45 1 4.2558 -4.4840 0.0007 46 1 1.7987 -4.5515 -0.0003 47 1 0.4942 -2.4934 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054813021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:12 Heat of formation + Delta-G solvation = 25.621773 kcal Electronic energy + Delta-G solvation = -29732.875475 eV Core-core repulsion = 25880.218747 eV Total energy + Delta-G solvation = -3852.656728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.20407 -40.93639 -39.12966 -37.84330 -35.96300 -35.57620 -33.86564 -32.28744 -31.73224 -31.30778 -29.36394 -28.81237 -27.83621 -25.82151 -25.41862 -24.54009 -23.44246 -22.18083 -20.86097 -20.66574 -19.42980 -19.04126 -18.70976 -17.80881 -17.29048 -16.95485 -16.55166 -16.16514 -15.91478 -15.63655 -15.49680 -15.26546 -15.11008 -14.66563 -14.47459 -14.36480 -14.06222 -13.98653 -13.94591 -13.55819 -13.42760 -13.03982 -13.00862 -12.89833 -12.78114 -12.68870 -12.52114 -12.34084 -12.27412 -12.20265 -11.94835 -11.50795 -11.48421 -11.27685 -11.19190 -11.01988 -10.33937 -9.91849 -9.61801 -9.20878 -8.93773 -7.91378 -5.18830 -0.84559 -0.36159 0.91653 1.33149 1.46011 1.48901 1.54451 1.88350 2.20749 2.57050 2.92150 3.07213 3.40066 3.43838 3.52450 3.67127 3.74483 3.83884 3.91891 3.97484 4.09611 4.13491 4.20753 4.30675 4.43492 4.46575 4.50097 4.60242 4.65283 4.70600 4.74947 4.78457 4.89720 4.98419 4.99860 5.01680 5.04355 5.09884 5.12864 5.24014 5.29498 5.40744 5.42951 5.48997 5.53150 5.58274 5.60920 5.88198 6.29374 6.41335 6.61078 7.00876 7.36209 8.11716 8.34876 9.32143 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009120 B = 0.004457 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.435161 B = 6280.951215 C = 8144.032765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.023 4.023 3 C -0.151 4.151 4 C 0.099 3.901 5 C 0.567 3.433 6 O -0.577 6.577 7 N -0.583 5.583 8 C 0.112 3.888 9 C -0.100 4.100 10 H 0.117 0.883 11 C -0.125 4.125 12 C 0.157 3.843 13 H 0.086 0.914 14 N -0.718 5.718 15 C -0.230 4.230 16 H 0.081 0.919 17 C -0.075 4.075 18 N -0.972 5.972 19 Si 0.967 3.033 20 H -0.273 1.273 21 H -0.302 1.302 22 H -0.281 1.281 23 C 0.086 3.914 24 N -0.452 5.452 25 C 0.096 3.904 26 C -0.111 4.111 27 C -0.093 4.093 28 C -0.102 4.102 29 C -0.102 4.102 30 C -0.102 4.102 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.372 0.628 41 H 0.247 0.753 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.131 0.869 45 H 0.160 0.840 46 H 0.168 0.832 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.199 -9.722 -15.228 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.031 4.031 3 C -0.172 4.172 4 C -0.053 4.053 5 C 0.355 3.645 6 O -0.458 6.458 7 N -0.313 5.313 8 C -0.011 4.011 9 C -0.119 4.119 10 H 0.135 0.865 11 C -0.183 4.183 12 C 0.046 3.954 13 H 0.104 0.896 14 N -0.357 5.357 15 C -0.362 4.362 16 H 0.099 0.901 17 C -0.267 4.267 18 N -0.623 5.623 19 Si 0.797 3.203 20 H -0.199 1.199 21 H -0.229 1.229 22 H -0.208 1.208 23 C -0.040 4.040 24 N -0.164 5.164 25 C -0.028 4.028 26 C -0.129 4.129 27 C -0.113 4.113 28 C -0.120 4.120 29 C -0.120 4.120 30 C -0.104 4.104 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.205 0.795 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.149 0.851 45 H 0.178 0.822 46 H 0.186 0.814 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.543 -9.392 -15.182 21.258 hybrid contribution -0.390 0.153 1.296 1.362 sum -11.933 -9.239 -13.886 20.507 Atomic orbital electron populations 1.20988 0.86194 1.05074 1.04744 1.20565 0.98938 0.90514 0.93055 1.21628 0.92693 1.00733 1.02158 1.21154 0.92469 0.91636 1.00046 1.17987 0.81362 0.87949 0.77218 1.90685 1.68722 1.32488 1.53920 1.48305 1.04295 1.10226 1.68445 1.22129 0.90196 0.87448 1.01282 1.22532 0.92675 0.95408 1.01311 0.86455 1.21525 0.99374 0.98974 0.98398 1.21734 0.94554 0.95322 0.83784 0.89628 1.42489 1.76696 1.15937 1.00565 1.19609 1.33298 0.94325 0.88995 0.90116 1.25480 1.03449 0.99934 0.97852 1.69829 1.54939 1.29730 1.07834 0.85301 0.78469 0.79364 0.77197 1.19913 1.22868 1.20766 1.23542 0.92098 0.87423 1.00891 1.68126 1.39537 0.97878 1.10880 1.19427 0.91351 0.92245 0.99765 1.21068 1.00821 0.90525 1.00509 1.21357 0.95458 0.97985 0.96461 1.21479 0.93639 0.99968 0.96889 1.21410 1.01827 0.89897 0.98915 1.19169 0.93322 0.95993 1.01931 0.88090 0.88479 0.89966 0.83496 0.93652 0.90108 0.94819 0.91091 0.92102 0.79542 0.94413 0.89584 0.90672 0.85065 0.82246 0.81420 0.81597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.59 71.24 0.68 -0.90 16 2 C -0.02 -0.56 5.92 -19.65 -0.12 -0.67 16 3 C -0.15 -4.75 9.23 22.36 0.21 -4.55 16 4 C 0.10 3.75 6.73 42.29 0.28 4.04 16 5 C 0.57 23.79 7.84 86.91 0.68 24.47 16 6 O -0.58 -26.13 16.61 -3.73 -0.06 -26.19 16 7 N -0.58 -23.02 3.33 -814.68 -2.71 -25.73 16 8 C 0.11 3.94 6.46 86.73 0.56 4.50 16 9 C -0.10 -3.14 3.42 -9.60 -0.03 -3.18 16 10 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 11 C -0.12 -4.06 8.80 71.98 0.63 -3.43 16 12 C 0.16 6.02 3.47 46.39 0.16 6.18 16 13 H 0.09 3.08 8.09 -2.39 -0.02 3.06 16 14 N -0.72 -35.73 4.56 -316.35 -1.44 -37.17 16 15 C -0.23 -12.57 9.96 84.03 0.84 -11.73 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 17 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 18 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 19 Si 0.97 46.51 29.55 68.60 2.03 48.53 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 C 0.09 3.23 5.62 86.86 0.49 3.72 16 24 N -0.45 -16.72 6.51 -177.78 -1.16 -17.88 16 25 C 0.10 3.01 6.61 40.48 0.27 3.28 16 26 C -0.11 -2.93 9.99 22.38 0.22 -2.70 16 27 C -0.09 -1.69 9.94 22.04 0.22 -1.47 16 28 C -0.10 -1.47 9.96 22.07 0.22 -1.25 16 29 C -0.10 -1.72 9.31 22.31 0.21 -1.51 16 30 C -0.10 -2.60 5.75 -21.22 -0.12 -2.72 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 0.93 6.51 -2.38 -0.02 0.91 16 33 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.15 4.41 7.60 -2.91 -0.02 4.38 16 35 H 0.05 1.81 7.82 -2.39 -0.02 1.79 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.03 1.36 6.34 -2.39 -0.02 1.34 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.37 20.59 6.32 -92.71 -0.59 20.01 16 41 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.09 3.76 5.88 -2.38 -0.01 3.75 16 43 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 45 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.17 1.55 6.43 -2.91 -0.02 1.54 16 Total: -1.00 -76.84 381.27 3.22 -73.62 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: 0.41 Total: 37.16 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 5.87 Total: 8.20 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -5.03 Total: -141.34 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.06 Total: -26.19 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -76.84 3.22 -73.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054813021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.247 kcal (2) G-P(sol) polarization free energy of solvation -76.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds