Wall clock time and date at job start Tue Mar 31 2020 22:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36537 * 120.88170 * 2 1 4 4 C 1.40239 * 119.81929 * 180.23479 * 3 2 1 5 5 C 1.48273 * 119.24023 * 180.02562 * 4 3 2 6 6 O 1.21505 * 119.99914 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99926 * 180.02562 * 5 4 3 8 8 C 1.47419 * 125.65040 * 359.68594 * 7 5 4 9 9 C 1.55129 * 104.72321 * 155.81871 * 8 7 5 10 10 H 1.08998 * 111.19601 * 279.19270 * 9 8 7 11 11 N 1.46498 * 110.93812 * 155.28886 * 9 8 7 12 12 C 1.36940 * 119.99918 * 92.95759 * 11 9 8 13 13 H 1.07996 * 120.00122 * 0.02562 * 12 11 9 14 14 C 1.38811 * 120.00339 * 179.97438 * 12 11 9 15 15 N 1.31617 * 120.00332 * 180.02562 * 14 12 11 16 16 Si 1.86808 * 119.99636 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47035 * 89.99892 * 16 14 12 18 18 H 1.48502 * 109.46970 * 209.99814 * 16 14 12 19 19 H 1.48494 * 109.47130 * 329.99737 * 16 14 12 20 20 C 1.55157 * 101.48156 * 37.29926 * 9 8 7 21 21 H 1.08998 * 110.72162 * 82.70059 * 20 9 8 22 22 C 1.53004 * 110.71667 * 205.96863 * 20 9 8 23 23 C 1.47025 * 125.64713 * 179.97438 * 7 5 4 24 24 N 1.31905 * 121.51769 * 0.06654 * 4 3 2 25 25 C 1.33230 * 121.30160 * 359.95453 * 24 4 3 26 26 C 1.40842 * 120.99077 * 180.02562 * 25 24 4 27 27 C 1.35991 * 119.73214 * 179.97438 * 26 25 24 28 28 C 1.39441 * 121.09492 * 359.97363 * 27 26 25 29 29 C 1.36123 * 120.91831 * 0.03359 * 28 27 26 30 30 C 1.40434 * 119.64809 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.46874 * 269.71612 * 1 2 3 32 32 H 1.09005 * 109.46763 * 29.71471 * 1 2 3 33 33 H 1.09001 * 109.47136 * 149.71526 * 1 2 3 34 34 H 1.08000 * 120.09123 * 0.26519 * 3 2 1 35 35 H 1.08996 * 110.37002 * 274.75364 * 8 7 5 36 36 H 1.09001 * 110.36376 * 37.07355 * 8 7 5 37 37 H 0.97004 * 120.00430 * 272.96232 * 11 9 8 38 38 H 0.96998 * 119.99872 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.46910 * 174.97860 * 22 20 9 40 40 H 1.09005 * 109.47113 * 294.97595 * 22 20 9 41 41 H 1.08996 * 109.47177 * 54.97406 * 22 20 9 42 42 H 1.08993 * 109.88328 * 300.43924 * 23 7 5 43 43 H 1.09000 * 109.88099 * 61.60376 * 23 7 5 44 44 H 1.07990 * 120.12989 * 359.95765 * 26 25 24 45 45 H 1.08006 * 119.44973 * 180.02562 * 27 26 25 46 46 H 1.07998 * 119.54090 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.17986 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1718 0.0000 4 6 3.6100 1.1458 -0.0050 5 6 4.3581 2.4260 -0.0043 6 8 3.7561 3.4814 0.0009 7 7 5.7058 2.4188 -0.0096 8 6 6.5587 1.2164 -0.0097 9 6 7.9008 1.6850 -0.6308 10 1 7.8427 1.7136 -1.7189 11 7 9.0078 0.8332 -0.1891 12 6 9.3844 -0.2460 -0.9432 13 1 8.8657 -0.4689 -1.8639 14 6 10.4337 -1.0529 -0.5250 15 7 10.7960 -2.0898 -1.2501 16 14 11.3315 -0.6669 1.0671 17 1 10.6678 -1.3719 2.1930 18 1 12.7420 -1.1194 0.9622 19 1 11.2983 0.7974 1.3116 20 6 8.0306 3.1150 -0.0429 21 1 8.4496 3.0819 0.9628 22 6 8.8806 4.0006 -0.9562 23 6 6.5690 3.6090 -0.0102 24 7 4.2785 0.0088 -0.0110 25 6 3.6481 -1.1649 -0.0118 26 6 4.3685 -2.3751 -0.0177 27 6 3.6988 -3.5587 -0.0178 28 6 2.3050 -3.5975 -0.0115 29 6 1.5733 -2.4496 -0.0058 30 6 2.2292 -1.2078 -0.0057 31 1 -0.3633 -0.0051 1.0276 32 1 -0.3633 0.8926 -0.5094 33 1 -0.3633 -0.8874 -0.5183 34 1 1.6838 2.1161 0.0043 35 1 6.7131 0.8607 1.0089 36 1 6.1107 0.4337 -0.6219 37 1 9.4740 1.0335 0.6377 38 1 11.5290 -2.6538 -0.9576 39 1 8.8849 5.0206 -0.5718 40 1 9.9013 3.6189 -0.9851 41 1 8.4614 3.9931 -1.9623 42 1 6.3628 4.2160 -0.8917 43 1 6.3955 4.1932 0.8935 44 1 5.4483 -2.3631 -0.0224 45 1 4.2559 -4.4840 -0.0219 46 1 1.7988 -4.5515 -0.0113 47 1 0.4942 -2.4935 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054813023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:18 Heat of formation + Delta-G solvation = 44.903116 kcal Electronic energy + Delta-G solvation = -29349.196793 eV Core-core repulsion = 25497.376167 eV Total energy + Delta-G solvation = -3851.820626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.20640 -39.69426 -37.79062 -36.84991 -34.99196 -34.13889 -32.48815 -31.05979 -30.75744 -30.44635 -28.06472 -27.83228 -26.71244 -24.51175 -23.68049 -23.52455 -21.70325 -21.00480 -20.14981 -19.61808 -18.10169 -17.77886 -17.51644 -16.77496 -16.03016 -15.75659 -15.25517 -14.95097 -14.67630 -14.40644 -14.27533 -14.10811 -13.53735 -13.47841 -13.30805 -13.21256 -13.18742 -13.00552 -12.72986 -12.61725 -12.37904 -12.13488 -11.77686 -11.70530 -11.66036 -11.51160 -11.32438 -11.10804 -10.75946 -10.62463 -10.36356 -10.32660 -10.15905 -9.93766 -9.62208 -9.40996 -8.92190 -8.89326 -8.34064 -8.31279 -7.33259 -5.81622 -3.18351 0.11586 0.58230 1.83495 2.37634 3.05567 3.26814 3.34447 3.37576 3.43041 4.00448 4.04368 4.32043 4.44747 4.54778 4.58386 4.69134 4.82263 4.97878 5.03335 5.08209 5.09306 5.18585 5.23980 5.28319 5.33050 5.46982 5.51078 5.55265 5.68691 5.74768 5.81922 5.83496 5.86516 5.88971 5.91880 5.96271 6.18111 6.20928 6.25033 6.30827 6.39044 6.39787 6.50635 6.53256 6.66212 6.83352 6.84369 7.62837 7.73233 7.93951 8.25948 8.37154 9.14303 9.86579 10.05442 11.36219 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.004063 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.333956 B = 6890.575935 C = 9324.915259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.035 4.035 3 C -0.129 4.129 4 C 0.122 3.878 5 C 0.577 3.423 6 O -0.547 6.547 7 N -0.590 5.590 8 C 0.077 3.923 9 C 0.178 3.822 10 H 0.075 0.925 11 N -0.734 5.734 12 C -0.246 4.246 13 H 0.092 0.908 14 C 0.010 3.990 15 N -0.931 5.931 16 Si 0.881 3.119 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.276 1.276 20 C -0.120 4.120 21 H 0.081 0.919 22 C -0.134 4.134 23 C 0.115 3.885 24 N -0.427 5.427 25 C 0.124 3.876 26 C -0.075 4.075 27 C -0.108 4.108 28 C -0.105 4.105 29 C -0.110 4.110 30 C -0.086 4.086 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.147 0.853 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.147 0.853 45 H 0.133 0.867 46 H 0.127 0.873 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.358 2.691 3.342 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.043 4.043 3 C -0.150 4.150 4 C -0.031 4.031 5 C 0.364 3.636 6 O -0.425 6.425 7 N -0.321 5.321 8 C -0.048 4.048 9 C 0.067 3.933 10 H 0.093 0.907 11 N -0.375 5.375 12 C -0.376 4.376 13 H 0.110 0.890 14 C -0.187 4.187 15 N -0.578 5.578 16 Si 0.711 3.289 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.202 1.202 20 C -0.140 4.140 21 H 0.099 0.901 22 C -0.192 4.192 23 C -0.008 4.008 24 N -0.139 5.139 25 C 0.001 3.999 26 C -0.094 4.094 27 C -0.128 4.128 28 C -0.123 4.123 29 C -0.129 4.129 30 C -0.088 4.088 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.165 0.835 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.197 0.803 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.165 0.835 45 H 0.151 0.849 46 H 0.145 0.855 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.741 2.993 3.147 19.238 hybrid contribution -0.064 0.020 1.249 1.251 sum -18.805 3.013 4.396 19.546 Atomic orbital electron populations 1.20847 0.89636 1.03644 1.03135 1.20088 0.96743 0.91700 0.95807 1.21539 0.93510 0.99495 1.00439 1.21237 0.91421 0.92198 0.98280 1.17568 0.80976 0.87331 0.77698 1.90744 1.68196 1.31365 1.52242 1.48356 1.04296 1.10129 1.69339 1.23809 0.91501 0.87070 1.02470 1.21492 0.86804 0.87470 0.97582 0.90663 1.42616 1.36515 1.31759 1.26573 1.19070 1.13132 1.01165 1.04194 0.89027 1.24640 0.98621 0.97282 0.98114 1.69695 1.31132 1.17994 1.38979 0.86609 0.79689 0.77815 0.84768 1.21051 1.21744 1.20248 1.22584 0.93156 0.97501 1.00738 0.90055 1.21664 1.00528 0.98134 0.98837 1.22041 0.89262 0.87697 1.01758 1.68284 1.38601 0.97319 1.09724 1.18988 0.89640 0.92332 0.98920 1.21109 1.01435 0.89797 0.97044 1.20984 0.94309 0.98391 0.99096 1.21008 0.94235 0.98463 0.98586 1.20965 0.99939 0.91157 1.00807 1.18845 0.93979 0.94269 1.01730 0.90201 0.90514 0.90684 0.83496 0.91593 0.87728 0.80344 0.93012 0.93175 0.91523 0.92549 0.91200 0.91734 0.83506 0.84902 0.85500 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.58 36.01 0.35 -0.49 16 2 C -0.04 -0.40 5.92 -104.30 -0.62 -1.02 16 3 C -0.13 -1.71 9.23 -39.44 -0.36 -2.07 16 4 C 0.12 1.94 6.73 -82.96 -0.56 1.39 16 5 C 0.58 10.00 7.84 -12.13 -0.10 9.90 16 6 O -0.55 -10.23 16.61 5.36 0.09 -10.14 16 7 N -0.59 -9.95 3.32 -171.34 -0.57 -10.52 16 8 C 0.08 1.38 5.64 -2.41 -0.01 1.37 16 9 C 0.18 3.33 3.17 -65.66 -0.21 3.12 16 10 H 0.08 1.48 7.99 -51.93 -0.41 1.06 16 11 N -0.73 -16.39 5.05 -51.24 -0.26 -16.65 16 12 C -0.25 -6.58 10.44 -15.06 -0.16 -6.74 16 13 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 14 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 15 N -0.93 -28.21 13.97 55.49 0.78 -27.43 16 16 Si 0.88 21.33 27.74 -169.99 -4.71 16.62 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.28 -6.27 6.52 56.52 0.37 -5.91 16 20 C -0.12 -1.84 3.19 -88.79 -0.28 -2.12 16 21 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 22 C -0.13 -1.85 9.13 37.16 0.34 -1.51 16 23 C 0.12 1.72 6.46 -3.07 -0.02 1.70 16 24 N -0.43 -7.03 6.51 -7.54 -0.05 -7.08 16 25 C 0.12 1.85 6.61 -84.85 -0.56 1.29 16 26 C -0.08 -1.04 9.99 -39.40 -0.39 -1.43 16 27 C -0.11 -1.18 9.94 -39.94 -0.40 -1.58 16 28 C -0.10 -0.97 9.95 -39.89 -0.40 -1.37 16 29 C -0.11 -1.07 9.30 -39.52 -0.37 -1.44 16 30 C -0.09 -1.07 5.75 -106.71 -0.61 -1.68 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.07 0.44 6.52 -51.93 -0.34 0.10 16 34 H 0.15 1.78 7.60 -52.49 -0.40 1.38 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.10 2.01 5.86 -51.93 -0.30 1.70 16 37 H 0.36 8.02 5.63 -40.82 -0.23 7.79 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 42 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 45 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 46 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.13 0.89 6.44 -52.49 -0.34 0.55 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -32.20 381.63 -10.10 -42.30 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.66 Total: 9.66 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -4.46 Total: -2.51 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.10 Total: -61.68 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.20 -10.10 -42.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054813023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.202 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds