Wall clock time and date at job start Tue Mar 31 2020 22:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36537 * 120.88170 * 2 1 4 4 C 1.40239 * 119.81929 * 180.23479 * 3 2 1 5 5 C 1.48273 * 119.24023 * 180.02562 * 4 3 2 6 6 O 1.21505 * 119.99914 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99926 * 180.02562 * 5 4 3 8 8 C 1.47419 * 125.65040 * 359.68594 * 7 5 4 9 9 C 1.55129 * 104.72321 * 155.81871 * 8 7 5 10 10 H 1.08998 * 111.19601 * 279.19270 * 9 8 7 11 11 N 1.46498 * 110.93812 * 155.28886 * 9 8 7 12 12 C 1.36940 * 119.99918 * 92.95759 * 11 9 8 13 13 H 1.07996 * 120.00122 * 0.02562 * 12 11 9 14 14 C 1.38811 * 120.00339 * 179.97438 * 12 11 9 15 15 N 1.31617 * 120.00332 * 180.02562 * 14 12 11 16 16 Si 1.86808 * 119.99636 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47035 * 89.99892 * 16 14 12 18 18 H 1.48502 * 109.46970 * 209.99814 * 16 14 12 19 19 H 1.48494 * 109.47130 * 329.99737 * 16 14 12 20 20 C 1.55157 * 101.48156 * 37.29926 * 9 8 7 21 21 H 1.08998 * 110.72162 * 82.70059 * 20 9 8 22 22 C 1.53004 * 110.71667 * 205.96863 * 20 9 8 23 23 C 1.47025 * 125.64713 * 179.97438 * 7 5 4 24 24 N 1.31905 * 121.51769 * 0.06654 * 4 3 2 25 25 C 1.33230 * 121.30160 * 359.95453 * 24 4 3 26 26 C 1.40842 * 120.99077 * 180.02562 * 25 24 4 27 27 C 1.35991 * 119.73214 * 179.97438 * 26 25 24 28 28 C 1.39441 * 121.09492 * 359.97363 * 27 26 25 29 29 C 1.36123 * 120.91831 * 0.03359 * 28 27 26 30 30 C 1.40434 * 119.64809 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.46874 * 269.71612 * 1 2 3 32 32 H 1.09005 * 109.46763 * 29.71471 * 1 2 3 33 33 H 1.09001 * 109.47136 * 149.71526 * 1 2 3 34 34 H 1.08000 * 120.09123 * 0.26519 * 3 2 1 35 35 H 1.08996 * 110.37002 * 274.75364 * 8 7 5 36 36 H 1.09001 * 110.36376 * 37.07355 * 8 7 5 37 37 H 0.97004 * 120.00430 * 272.96232 * 11 9 8 38 38 H 0.96998 * 119.99872 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.46910 * 174.97860 * 22 20 9 40 40 H 1.09005 * 109.47113 * 294.97595 * 22 20 9 41 41 H 1.08996 * 109.47177 * 54.97406 * 22 20 9 42 42 H 1.08993 * 109.88328 * 300.43924 * 23 7 5 43 43 H 1.09000 * 109.88099 * 61.60376 * 23 7 5 44 44 H 1.07990 * 120.12989 * 359.95765 * 26 25 24 45 45 H 1.08006 * 119.44973 * 180.02562 * 27 26 25 46 46 H 1.07998 * 119.54090 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.17986 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1718 0.0000 4 6 3.6100 1.1458 -0.0050 5 6 4.3581 2.4260 -0.0043 6 8 3.7561 3.4814 0.0009 7 7 5.7058 2.4188 -0.0096 8 6 6.5587 1.2164 -0.0097 9 6 7.9008 1.6850 -0.6308 10 1 7.8427 1.7136 -1.7189 11 7 9.0078 0.8332 -0.1891 12 6 9.3844 -0.2460 -0.9432 13 1 8.8657 -0.4689 -1.8639 14 6 10.4337 -1.0529 -0.5250 15 7 10.7960 -2.0898 -1.2501 16 14 11.3315 -0.6669 1.0671 17 1 10.6678 -1.3719 2.1930 18 1 12.7420 -1.1194 0.9622 19 1 11.2983 0.7974 1.3116 20 6 8.0306 3.1150 -0.0429 21 1 8.4496 3.0819 0.9628 22 6 8.8806 4.0006 -0.9562 23 6 6.5690 3.6090 -0.0102 24 7 4.2785 0.0088 -0.0110 25 6 3.6481 -1.1649 -0.0118 26 6 4.3685 -2.3751 -0.0177 27 6 3.6988 -3.5587 -0.0178 28 6 2.3050 -3.5975 -0.0115 29 6 1.5733 -2.4496 -0.0058 30 6 2.2292 -1.2078 -0.0057 31 1 -0.3633 -0.0051 1.0276 32 1 -0.3633 0.8926 -0.5094 33 1 -0.3633 -0.8874 -0.5183 34 1 1.6838 2.1161 0.0043 35 1 6.7131 0.8607 1.0089 36 1 6.1107 0.4337 -0.6219 37 1 9.4740 1.0335 0.6377 38 1 11.5290 -2.6538 -0.9576 39 1 8.8849 5.0206 -0.5718 40 1 9.9013 3.6189 -0.9851 41 1 8.4614 3.9931 -1.9623 42 1 6.3628 4.2160 -0.8917 43 1 6.3955 4.1932 0.8935 44 1 5.4483 -2.3631 -0.0224 45 1 4.2559 -4.4840 -0.0219 46 1 1.7988 -4.5515 -0.0113 47 1 0.4942 -2.4935 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054813023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:16 Heat of formation + Delta-G solvation = 25.794370 kcal Electronic energy + Delta-G solvation = -29350.025411 eV Core-core repulsion = 25497.376167 eV Total energy + Delta-G solvation = -3852.649244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.24409 -40.97857 -39.15362 -37.88306 -36.10987 -35.76979 -33.97256 -32.90800 -31.78497 -31.32871 -29.49515 -28.81134 -27.89110 -25.82593 -25.21753 -24.55459 -23.05461 -22.16454 -21.61939 -20.84979 -19.55386 -19.06307 -18.81317 -17.93478 -17.35597 -17.09536 -16.50064 -16.24678 -15.95799 -15.64181 -15.38864 -15.19737 -15.00125 -14.81256 -14.55804 -14.44830 -14.32679 -14.06951 -13.96478 -13.88259 -13.54876 -13.21524 -13.00805 -12.98190 -12.96325 -12.72071 -12.56231 -12.35156 -12.19329 -12.15040 -11.94900 -11.82068 -11.54805 -11.35835 -11.20774 -11.04551 -10.38978 -9.95464 -9.68298 -9.31174 -9.23747 -8.00744 -5.35656 -0.87453 -0.38405 0.88272 1.29291 1.39562 1.42119 1.49049 1.78132 2.15776 2.49251 2.85052 3.03309 3.28314 3.31698 3.48455 3.59459 3.68763 3.72789 3.81542 3.88534 4.03445 4.10045 4.18838 4.29469 4.33243 4.40237 4.45755 4.49837 4.59102 4.60146 4.66938 4.77481 4.87321 4.95877 4.96972 4.99495 5.07234 5.10347 5.11450 5.14448 5.25698 5.32033 5.39688 5.42645 5.44908 5.52875 5.77540 5.85085 6.21931 6.30567 6.57243 6.95339 7.07094 7.80128 8.01059 9.20360 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.004063 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.333956 B = 6890.575935 C = 9324.915259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.019 4.019 3 C -0.146 4.146 4 C 0.098 3.902 5 C 0.575 3.425 6 O -0.564 6.564 7 N -0.594 5.594 8 C 0.095 3.905 9 C 0.172 3.828 10 H 0.061 0.939 11 N -0.733 5.733 12 C -0.229 4.229 13 H 0.056 0.944 14 C -0.055 4.055 15 N -0.980 5.980 16 Si 0.949 3.051 17 H -0.282 1.282 18 H -0.297 1.297 19 H -0.248 1.248 20 C -0.106 4.106 21 H 0.090 0.910 22 C -0.130 4.130 23 C 0.115 3.885 24 N -0.461 5.461 25 C 0.099 3.901 26 C -0.115 4.115 27 C -0.094 4.094 28 C -0.101 4.101 29 C -0.098 4.098 30 C -0.099 4.099 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.155 0.845 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.369 0.631 38 H 0.258 0.742 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.151 0.849 46 H 0.169 0.831 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.130 3.018 4.772 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.027 4.027 3 C -0.167 4.167 4 C -0.054 4.054 5 C 0.363 3.637 6 O -0.444 6.444 7 N -0.324 5.324 8 C -0.030 4.030 9 C 0.061 3.939 10 H 0.079 0.921 11 N -0.375 5.375 12 C -0.360 4.360 13 H 0.074 0.926 14 C -0.247 4.247 15 N -0.631 5.631 16 Si 0.776 3.224 17 H -0.208 1.208 18 H -0.224 1.224 19 H -0.173 1.173 20 C -0.126 4.126 21 H 0.108 0.892 22 C -0.188 4.188 23 C -0.007 4.007 24 N -0.174 5.174 25 C -0.024 4.024 26 C -0.134 4.134 27 C -0.114 4.114 28 C -0.118 4.118 29 C -0.117 4.117 30 C -0.101 4.101 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.173 0.827 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.202 0.798 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.135 0.865 45 H 0.169 0.831 46 H 0.186 0.814 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -21.544 3.381 4.585 22.284 hybrid contribution 0.638 -0.197 0.725 0.986 sum -20.905 3.184 5.310 21.803 Atomic orbital electron populations 1.21007 0.86015 1.05320 1.04731 1.20576 0.98973 0.90357 0.92779 1.21653 0.92406 1.00821 1.01803 1.21233 0.92615 0.91501 1.00081 1.17879 0.80953 0.87873 0.77041 1.90709 1.68388 1.32075 1.53186 1.48377 1.04486 1.10125 1.69442 1.23372 0.91167 0.87250 1.01248 1.21593 0.85917 0.89353 0.97001 0.92128 1.42493 1.37525 1.31137 1.26313 1.18960 1.12010 1.01966 1.03039 0.92590 1.25392 0.99992 0.97338 1.01929 1.69873 1.32182 1.19637 1.41363 0.85509 0.77583 0.79157 0.80150 1.20797 1.22366 1.17277 1.22506 0.93974 0.94938 1.01191 0.89218 1.21646 0.99169 0.99289 0.98653 1.22163 0.88425 0.87198 1.02911 1.68139 1.39887 0.98128 1.11235 1.19268 0.91387 0.91848 0.99920 1.21026 1.00365 0.91201 1.00832 1.21317 0.95762 0.97763 0.96544 1.21453 0.93147 1.00291 0.96957 1.21439 1.01909 0.89758 0.98546 1.19153 0.92930 0.96218 1.01830 0.88332 0.89429 0.88475 0.82715 0.92680 0.89498 0.79751 0.93349 0.90174 0.92800 0.92535 0.90344 0.90236 0.86488 0.83128 0.81393 0.81126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.58 71.24 0.68 -0.52 16 2 C -0.02 -0.39 5.92 -19.65 -0.12 -0.51 16 3 C -0.15 -3.87 9.23 22.36 0.21 -3.66 16 4 C 0.10 3.27 6.73 42.29 0.28 3.55 16 5 C 0.57 20.55 7.84 86.91 0.68 21.24 16 6 O -0.56 -21.30 16.61 -3.73 -0.06 -21.36 16 7 N -0.59 -20.57 3.32 -814.30 -2.71 -23.28 16 8 C 0.10 3.62 5.64 86.93 0.49 4.11 16 9 C 0.17 6.61 3.17 46.46 0.15 6.75 16 10 H 0.06 2.51 7.99 -2.39 -0.02 2.49 16 11 N -0.73 -33.39 5.05 -316.02 -1.59 -34.99 16 12 C -0.23 -12.78 10.44 84.03 0.88 -11.90 16 13 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 14 C -0.05 -3.16 5.50 84.86 0.47 -2.70 16 15 N -0.98 -61.90 13.97 21.65 0.30 -61.60 16 16 Si 0.95 44.62 27.74 68.60 1.90 46.52 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 19 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 20 C -0.11 -3.17 3.19 -9.61 -0.03 -3.20 16 21 H 0.09 2.57 8.00 -2.39 -0.02 2.55 16 22 C -0.13 -3.38 9.13 71.98 0.66 -2.72 16 23 C 0.12 3.36 6.46 86.73 0.56 3.92 16 24 N -0.46 -16.33 6.51 -177.77 -1.16 -17.48 16 25 C 0.10 3.08 6.61 40.49 0.27 3.35 16 26 C -0.12 -3.42 9.99 22.38 0.22 -3.20 16 27 C -0.09 -1.99 9.94 22.04 0.22 -1.77 16 28 C -0.10 -1.53 9.95 22.07 0.22 -1.31 16 29 C -0.10 -1.55 9.30 22.31 0.21 -1.34 16 30 C -0.10 -2.34 5.75 -21.22 -0.12 -2.47 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.79 8.10 -2.38 -0.02 0.77 16 33 H 0.10 0.62 6.52 -2.39 -0.02 0.60 16 34 H 0.16 3.70 7.60 -2.91 -0.02 3.68 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.09 3.66 5.86 -2.39 -0.01 3.64 16 37 H 0.37 16.04 5.63 -92.71 -0.52 15.52 16 38 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 42 H 0.08 2.17 7.82 -2.39 -0.02 2.15 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.12 4.00 8.06 -2.92 -0.02 3.97 16 45 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 46 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 47 H 0.17 1.30 6.44 -2.91 -0.02 1.28 16 Total: -1.00 -75.05 381.63 3.02 -72.03 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.41 Total: 32.52 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.92 Total: 7.64 kcal Atomic # 7 Polarization: -132.19 SS G_CDS: -5.16 Total: -137.35 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.06 Total: -21.36 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Total: -75.05 3.02 -72.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054813023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.821 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds