Wall clock time and date at job start Tue Mar 31 2020 22:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36543 * 120.88383 * 2 1 4 4 C 1.40232 * 119.81629 * 180.22409 * 3 2 1 5 5 C 1.48274 * 119.23535 * 179.73925 * 4 3 2 6 6 O 1.21500 * 120.00284 * 359.72642 * 5 4 3 7 7 N 1.34776 * 120.00056 * 179.73199 * 5 4 3 8 8 C 1.47020 * 125.65207 * 180.02562 * 7 5 4 9 9 C 1.54322 * 107.27484 * 181.02149 * 8 7 5 10 10 H 1.09001 * 110.71904 * 263.83408 * 9 8 7 11 11 C 1.53003 * 110.72177 * 140.55640 * 9 8 7 12 12 C 1.55163 * 102.94125 * 22.19588 * 9 8 7 13 13 H 1.08995 * 111.03679 * 206.41029 * 12 9 8 14 14 N 1.46499 * 111.00385 * 82.57101 * 12 9 8 15 15 C 1.36931 * 120.00122 * 161.35093 * 14 12 9 16 16 H 1.08002 * 120.00098 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00429 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99535 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00187 * 180.27849 * 17 15 14 20 20 H 1.48497 * 109.47173 * 179.72427 * 19 17 15 21 21 H 1.48506 * 109.46866 * 299.71963 * 19 17 15 22 22 H 1.48501 * 109.47438 * 59.72083 * 19 17 15 23 23 C 1.47428 * 125.64736 * 359.97438 * 7 5 4 24 24 N 1.31902 * 121.52874 * 359.46839 * 4 3 2 25 25 C 1.33243 * 121.29683 * 0.24894 * 24 4 3 26 26 C 1.40831 * 121.00426 * 180.02562 * 25 24 4 27 27 C 1.35991 * 119.73898 * 179.97438 * 26 25 24 28 28 C 1.39441 * 121.09131 * 0.04102 * 27 26 25 29 29 C 1.36126 * 120.91768 * 359.97424 * 28 27 26 30 30 C 1.40425 * 119.64723 * 0.02562 * 29 28 27 31 31 H 1.09002 * 109.47394 * 270.32635 * 1 2 3 32 32 H 1.09000 * 109.47204 * 30.32200 * 1 2 3 33 33 H 1.09001 * 109.47286 * 150.32510 * 1 2 3 34 34 H 1.07997 * 120.08803 * 359.94468 * 3 2 1 35 35 H 1.08997 * 109.88236 * 300.44519 * 8 7 5 36 36 H 1.09001 * 109.87808 * 61.44955 * 8 7 5 37 37 H 1.09002 * 109.46882 * 306.48374 * 11 9 8 38 38 H 1.09004 * 109.46505 * 66.47772 * 11 9 8 39 39 H 1.08996 * 109.47329 * 186.47875 * 11 9 8 40 40 H 0.97001 * 119.99790 * 341.34610 * 14 12 9 41 41 H 0.97005 * 119.99717 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.36798 * 37.06769 * 23 7 5 43 43 H 1.08999 * 110.45853 * 274.79003 * 23 7 5 44 44 H 1.07997 * 120.13239 * 359.97438 * 26 25 24 45 45 H 1.07997 * 119.45509 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.54327 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.17894 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2078 1.1718 0.0000 4 6 3.6099 1.1457 -0.0048 5 6 4.3580 2.4259 -0.0106 6 8 3.7561 3.4813 -0.0162 7 7 5.7057 2.4188 -0.0097 8 6 6.5689 3.6089 -0.0145 9 6 8.0307 3.1147 -0.0377 10 1 8.4451 3.0888 0.9701 11 6 8.8849 3.9937 -0.9535 12 6 7.9035 1.6804 -0.6159 13 1 8.7251 1.0485 -0.2791 14 7 7.8320 1.7085 -2.0789 15 6 8.0987 0.5750 -2.7993 16 1 8.3615 -0.3399 -2.2890 17 6 8.0315 0.6016 -4.1855 18 7 7.7108 1.7165 -4.8075 19 14 8.3879 -0.9467 -5.1679 20 1 8.2433 -0.6576 -6.6173 21 1 9.7740 -1.4013 -4.8897 22 1 7.4298 -2.0121 -4.7776 23 6 6.5586 1.2163 -0.0028 24 7 4.2786 0.0088 0.0011 25 6 3.6481 -1.1650 0.0070 26 6 4.3683 -2.3753 0.0138 27 6 3.6985 -3.5588 0.0202 28 6 2.3046 -3.5974 0.0192 29 6 1.5731 -2.4494 0.0124 30 6 2.2291 -1.2078 0.0057 31 1 -0.3634 0.0059 1.0276 32 1 -0.3633 0.8871 -0.5188 33 1 -0.3634 -0.8929 -0.5088 34 1 1.6837 2.1161 -0.0009 35 1 6.3667 4.2099 -0.9010 36 1 6.3894 4.2005 0.8831 37 1 8.4209 4.0510 -1.9382 38 1 8.9607 4.9947 -0.5288 39 1 9.8813 3.5617 -1.0459 40 1 7.5955 2.5300 -2.5372 41 1 7.6634 1.7350 -5.7762 42 1 6.1134 0.4318 -0.6148 43 1 6.7089 0.8616 1.0169 44 1 5.4482 -2.3635 0.0140 45 1 4.2554 -4.4841 0.0258 46 1 1.7983 -4.5514 0.0248 47 1 0.4941 -2.4932 0.0121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054813024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:25 Heat of formation + Delta-G solvation = 44.966438 kcal Electronic energy + Delta-G solvation = -29774.154005 eV Core-core repulsion = 25922.336125 eV Total energy + Delta-G solvation = -3851.817880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.10162 -39.54596 -37.69333 -36.74382 -34.89384 -33.76995 -32.30629 -30.75491 -30.42166 -30.35708 -27.95725 -27.64871 -26.50313 -24.35327 -23.75177 -23.55800 -22.03951 -21.10880 -19.54621 -19.17538 -17.99616 -17.76646 -17.31003 -16.50031 -15.82933 -15.57465 -15.16392 -14.79455 -14.60677 -14.47402 -14.20789 -14.00315 -13.66368 -13.45842 -13.21258 -13.10728 -12.90619 -12.85319 -12.57717 -12.32256 -12.09464 -11.95548 -11.72207 -11.65996 -11.45583 -11.32908 -11.07095 -10.87628 -10.68080 -10.45549 -10.28075 -10.25044 -10.02446 -9.79187 -9.57917 -9.25271 -8.85394 -8.82970 -8.26860 -8.10933 -6.94106 -5.76277 -3.04723 0.20234 0.66588 1.90546 2.49235 3.26312 3.42471 3.43319 3.47771 3.48930 4.10116 4.17044 4.39811 4.56798 4.58810 4.67041 4.74224 4.97159 5.03580 5.09682 5.20296 5.28036 5.29702 5.34046 5.38309 5.39576 5.58870 5.63546 5.73861 5.77476 5.87232 5.90965 5.94504 5.98175 6.01054 6.08940 6.28005 6.31438 6.33722 6.34867 6.41989 6.44643 6.48302 6.68095 6.73867 6.75846 6.96650 7.10401 7.70014 7.75790 7.94978 8.41891 8.47688 9.53417 10.10020 10.44751 11.46158 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009038 B = 0.004560 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.454104 B = 6138.794139 C = 8011.345960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.036 4.036 3 C -0.127 4.127 4 C 0.131 3.869 5 C 0.577 3.423 6 O -0.549 6.549 7 N -0.577 5.577 8 C 0.115 3.885 9 C -0.114 4.114 10 H 0.079 0.921 11 C -0.131 4.131 12 C 0.167 3.833 13 H 0.069 0.931 14 N -0.709 5.709 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.904 3.096 20 H -0.292 1.292 21 H -0.286 1.286 22 H -0.287 1.287 23 C 0.072 3.928 24 N -0.427 5.427 25 C 0.125 3.875 26 C -0.077 4.077 27 C -0.109 4.109 28 C -0.110 4.110 29 C -0.106 4.106 30 C -0.088 4.088 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.112 0.888 43 H 0.052 0.948 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.737 -6.463 13.555 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.044 4.044 3 C -0.148 4.148 4 C -0.022 4.022 5 C 0.364 3.636 6 O -0.428 6.428 7 N -0.306 5.306 8 C -0.008 4.008 9 C -0.134 4.134 10 H 0.098 0.902 11 C -0.189 4.189 12 C 0.054 3.946 13 H 0.087 0.913 14 N -0.350 5.350 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.735 3.265 20 H -0.218 1.218 21 H -0.212 1.212 22 H -0.214 1.214 23 C -0.054 4.054 24 N -0.139 5.139 25 C 0.002 3.998 26 C -0.096 4.096 27 C -0.129 4.129 28 C -0.128 4.128 29 C -0.124 4.124 30 C -0.090 4.090 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.165 0.835 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.222 0.778 41 H 0.065 0.935 42 H 0.130 0.870 43 H 0.070 0.930 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.130 -6.115 13.444 17.910 hybrid contribution -0.790 -0.678 -0.860 1.351 sum -10.920 -6.794 12.584 17.993 Atomic orbital electron populations 1.20839 0.89669 1.03685 1.03026 1.20076 0.96727 0.91708 0.95924 1.21568 0.93618 0.99525 1.00099 1.21271 0.91404 0.92273 0.97292 1.17491 0.81081 0.87217 0.77823 1.90734 1.68216 1.31345 1.52510 1.48155 1.04145 1.09672 1.68665 1.22032 0.89533 0.87731 1.01466 1.22503 0.93480 0.97598 0.99772 0.90234 1.21600 0.99986 0.97414 0.99904 1.21468 0.93925 0.92768 0.86410 0.91297 1.42357 1.82235 1.11930 0.98503 1.19155 1.39199 0.89918 0.88711 0.91151 1.24712 1.02438 0.96936 0.96522 1.69652 1.54677 1.25497 1.08053 0.86316 0.78013 0.82807 0.79332 1.21796 1.21229 1.21356 1.23751 0.93177 0.88240 1.00211 1.68272 1.38528 0.97245 1.09862 1.18986 0.89680 0.92423 0.98696 1.20959 1.00888 0.89927 0.97787 1.20913 0.94391 0.98112 0.99512 1.20958 0.94196 0.98405 0.99258 1.20972 0.99945 0.91185 1.00311 1.18834 0.94026 0.94241 1.01891 0.90258 0.90472 0.90740 0.83461 0.91233 0.92130 0.91259 0.93744 0.92107 0.77839 0.93482 0.87031 0.92956 0.84133 0.85189 0.85608 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.59 36.00 0.35 -0.64 16 2 C -0.04 -0.46 5.92 -104.30 -0.62 -1.08 16 3 C -0.13 -1.93 9.23 -39.44 -0.36 -2.29 16 4 C 0.13 2.35 6.72 -82.96 -0.56 1.79 16 5 C 0.58 11.46 7.84 -12.13 -0.10 11.36 16 6 O -0.55 -11.74 16.61 5.37 0.09 -11.65 16 7 N -0.58 -10.99 3.33 -171.46 -0.57 -11.56 16 8 C 0.11 1.99 6.46 -3.07 -0.02 1.97 16 9 C -0.11 -1.83 3.42 -88.78 -0.30 -2.14 16 10 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 11 C -0.13 -2.12 8.71 37.16 0.32 -1.80 16 12 C 0.17 3.20 3.44 -65.77 -0.23 2.97 16 13 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 14 N -0.71 -17.14 4.74 -51.35 -0.24 -17.38 16 15 C -0.24 -6.41 9.98 -15.06 -0.15 -6.56 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 19 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 C 0.07 1.33 5.62 -2.52 -0.01 1.32 16 24 N -0.43 -7.57 6.51 -7.54 -0.05 -7.61 16 25 C 0.13 1.96 6.61 -84.85 -0.56 1.40 16 26 C -0.08 -1.04 9.99 -39.41 -0.39 -1.43 16 27 C -0.11 -1.16 9.94 -39.94 -0.40 -1.56 16 28 C -0.11 -1.06 9.96 -39.89 -0.40 -1.45 16 29 C -0.11 -1.10 9.31 -39.52 -0.37 -1.47 16 30 C -0.09 -1.19 5.75 -106.71 -0.61 -1.80 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.61 8.10 -51.93 -0.42 0.18 16 33 H 0.07 0.53 6.51 -51.93 -0.34 0.19 16 34 H 0.15 2.08 7.60 -52.49 -0.40 1.68 16 35 H 0.07 1.31 7.76 -51.93 -0.40 0.91 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.32 6.35 -51.93 -0.33 0.99 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.39 10.12 6.08 -40.82 -0.25 9.87 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.11 2.34 5.88 -51.93 -0.31 2.04 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 47 H 0.13 0.99 6.43 -52.49 -0.34 0.65 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -32.94 381.10 -10.39 -43.33 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.55 Total: 10.95 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -4.51 Total: -1.79 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: -0.14 Total: -63.83 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.94 -10.39 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054813024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.295 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds