Wall clock time and date at job start Tue Mar 31 2020 22:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39444 * 119.53906 * 2 1 4 4 C 1.35995 * 121.07802 * 179.97438 * 3 2 1 5 5 C 1.40819 * 119.74040 * 359.97438 * 4 3 2 6 6 N 1.33267 * 120.98213 * 180.27417 * 5 4 3 7 7 C 1.31881 * 121.29992 * 180.27333 * 6 5 4 8 8 C 1.48273 * 119.23997 * 179.71170 * 7 6 5 9 9 O 1.21501 * 119.99666 * 179.72855 * 8 7 6 10 10 N 1.34774 * 120.00352 * 359.73488 * 8 7 6 11 11 C 1.47425 * 125.65138 * 179.97438 * 10 8 7 12 12 C 1.54908 * 104.92961 * 204.15299 * 11 10 8 13 13 H 1.09008 * 111.00494 * 81.01141 * 12 11 10 14 14 C 1.52999 * 111.00368 * 204.85960 * 12 11 10 15 15 C 1.55154 * 101.58289 * 322.93718 * 12 11 10 16 16 H 1.09002 * 110.72290 * 153.86663 * 15 12 11 17 17 N 1.46499 * 110.71955 * 277.13799 * 15 12 11 18 18 C 1.36941 * 120.00165 * 204.99816 * 17 15 12 19 19 H 1.08007 * 119.99638 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00136 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99825 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00054 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47237 * 89.99515 * 22 20 18 24 24 H 1.48496 * 109.46898 * 209.99624 * 22 20 18 25 25 H 1.48498 * 109.46892 * 329.99466 * 22 20 18 26 26 C 1.47290 * 125.79121 * 359.97438 * 10 8 7 27 27 C 1.40278 * 121.51295 * 359.43911 * 7 6 5 28 28 C 1.36496 * 119.82474 * 0.27729 * 27 7 6 29 29 C 1.40758 * 118.24383 * 359.97438 * 28 27 7 30 30 C 1.36134 * 119.54294 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46902 * 90.00107 * 1 2 3 32 32 H 1.09000 * 109.46761 * 209.99589 * 1 2 3 33 33 H 1.09000 * 109.47227 * 330.00328 * 1 2 3 34 34 H 1.07994 * 119.45590 * 359.97438 * 3 2 1 35 35 H 1.08007 * 120.12726 * 179.97438 * 4 3 2 36 36 H 1.09002 * 110.36696 * 85.25946 * 11 10 8 37 37 H 1.08995 * 110.36608 * 323.04783 * 11 10 8 38 38 H 1.09001 * 109.47276 * 58.55057 * 14 12 11 39 39 H 1.09003 * 109.46690 * 178.54597 * 14 12 11 40 40 H 1.08998 * 109.47248 * 298.54758 * 14 12 11 41 41 H 0.96996 * 120.00138 * 25.00080 * 17 15 12 42 42 H 0.97000 * 119.99898 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.85762 * 59.50172 * 26 10 8 44 44 H 1.08995 * 110.00297 * 298.43119 * 26 10 8 45 45 H 1.08003 * 120.08749 * 180.25465 * 27 7 6 46 46 H 1.08001 * 120.87968 * 179.97438 * 28 27 7 47 47 H 1.07994 * 120.17499 * 0.06910 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2132 0.0000 4 6 3.5540 1.2497 0.0005 5 6 4.2851 0.0462 0.0016 6 7 5.6178 0.0531 0.0076 7 6 6.3088 -1.0702 0.0033 8 6 7.7903 -1.0091 0.0038 9 8 8.4405 -2.0355 0.0049 10 7 8.4156 0.1847 0.0032 11 6 9.8755 0.3901 0.0042 12 6 10.0800 1.7986 0.6155 13 1 10.0308 1.7631 1.7039 14 6 11.4012 2.4127 0.1483 15 6 8.8692 2.5716 0.0291 16 1 8.5903 3.4015 0.6784 17 7 9.1645 3.0473 -1.3247 18 6 8.5047 4.1373 -1.8265 19 1 7.7669 4.6465 -1.2240 20 6 8.7848 4.5884 -3.1090 21 7 8.1502 5.6357 -3.5915 22 14 10.0613 3.7081 -4.1507 23 1 9.4028 2.6360 -4.9394 24 1 10.7021 4.6791 -5.0736 25 1 11.0939 3.1095 -3.2672 26 6 7.7569 1.5022 0.0016 27 6 5.6744 -2.3213 0.0039 28 6 4.3112 -2.3912 0.0034 29 6 3.5824 -1.1870 0.0027 30 6 2.1783 -1.1844 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6382 2.1388 -0.0004 35 1 4.0708 2.1981 0.0001 36 1 10.2637 0.3584 -1.0139 37 1 10.3644 -0.3652 0.6195 38 1 11.4073 2.4768 -0.9398 39 1 11.5073 3.4115 0.5717 40 1 12.2299 1.7874 0.4802 41 1 9.8273 2.5902 -1.8656 42 1 8.3462 5.9512 -4.4876 43 1 7.1253 1.6014 0.8844 44 1 7.1547 1.6168 -0.8997 45 1 6.2630 -3.2268 0.0045 46 1 3.8051 -3.3453 0.0034 47 1 1.6337 -2.1169 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054890435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:13 Heat of formation + Delta-G solvation = 45.266521 kcal Electronic energy + Delta-G solvation = -29279.423028 eV Core-core repulsion = 25427.618160 eV Total energy + Delta-G solvation = -3851.804868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13402 -39.72068 -37.98039 -37.14682 -34.16868 -33.65022 -32.62105 -31.96667 -30.77983 -30.39012 -28.17031 -27.84381 -26.10025 -24.43132 -23.67888 -23.15568 -22.19879 -21.87555 -19.74880 -19.40657 -18.07830 -17.87371 -17.23981 -16.88978 -15.90617 -15.70418 -15.28012 -14.84571 -14.48167 -14.39281 -14.29772 -14.22650 -13.96328 -13.58603 -13.48076 -13.28261 -13.09497 -12.78805 -12.70464 -12.58598 -12.20029 -12.10857 -11.71625 -11.66978 -11.56168 -11.40870 -11.35575 -11.00414 -10.77854 -10.72602 -10.48874 -10.31876 -10.14841 -9.93797 -9.57653 -9.48019 -8.94829 -8.85929 -8.36364 -8.26950 -7.31954 -5.80678 -3.16474 0.10287 0.55715 1.81860 2.36762 3.10810 3.24394 3.34348 3.38511 3.44086 3.98938 4.04161 4.36671 4.52812 4.54727 4.56002 4.65914 4.81184 4.89271 4.96142 5.08671 5.16508 5.20449 5.25893 5.29102 5.33731 5.39786 5.56088 5.58467 5.63589 5.71346 5.76451 5.83091 5.87810 5.92250 5.94084 6.11521 6.15010 6.18365 6.22463 6.29483 6.34833 6.38493 6.55947 6.58271 6.67066 6.76690 6.85119 7.62718 7.77191 7.95131 8.29407 8.38315 9.15806 9.88464 10.07452 11.37356 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.003710 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.678615 B = 7546.322564 C = 9244.015990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C -0.107 4.107 4 C -0.072 4.072 5 C 0.118 3.882 6 N -0.423 5.423 7 C 0.118 3.882 8 C 0.577 3.423 9 O -0.549 6.549 10 N -0.586 5.586 11 C 0.111 3.889 12 C -0.118 4.118 13 H 0.083 0.917 14 C -0.134 4.134 15 C 0.172 3.828 16 H 0.081 0.919 17 N -0.736 5.736 18 C -0.244 4.244 19 H 0.093 0.907 20 C 0.009 3.991 21 N -0.931 5.931 22 Si 0.878 3.122 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.090 3.910 27 C -0.123 4.123 28 C -0.070 4.070 29 C -0.082 4.082 30 C -0.111 4.111 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 -13.772 10.714 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.073 4.073 3 C -0.126 4.126 4 C -0.091 4.091 5 C -0.006 4.006 6 N -0.134 5.134 7 C -0.036 4.036 8 C 0.364 3.636 9 O -0.427 6.427 10 N -0.317 5.317 11 C -0.011 4.011 12 C -0.138 4.138 13 H 0.102 0.898 14 C -0.191 4.191 15 C 0.061 3.939 16 H 0.099 0.901 17 N -0.379 5.379 18 C -0.374 4.374 19 H 0.111 0.889 20 C -0.187 4.187 21 N -0.579 5.579 22 Si 0.709 3.291 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.035 4.035 27 C -0.143 4.143 28 C -0.096 4.096 29 C -0.084 4.084 30 C -0.129 4.129 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.197 0.803 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.166 0.834 46 H 0.161 0.839 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.643 -13.273 10.659 20.077 hybrid contribution 0.366 -1.351 -1.036 1.742 sum -10.277 -14.624 9.623 20.300 Atomic orbital electron populations 1.20862 0.90777 1.03035 1.02679 1.19773 0.96506 0.93035 0.98002 1.20851 0.94028 0.97873 0.99894 1.21003 0.93583 0.97298 0.97174 1.18949 0.89087 0.92939 0.99609 1.68233 1.07064 1.29303 1.08812 1.21269 0.94242 0.89518 0.98596 1.17547 0.85658 0.82692 0.77740 1.90744 1.66076 1.33423 1.52475 1.48392 1.07878 1.06342 1.69074 1.22331 0.80425 0.97263 1.01098 1.22690 0.97128 0.94042 0.99960 0.89832 1.21591 0.94633 1.00439 1.02472 1.21299 0.90941 0.93742 0.87926 0.90096 1.42791 1.47783 1.34885 1.12411 1.19065 1.16915 1.03336 0.98086 0.88948 1.24625 0.99296 0.97627 0.97120 1.69690 1.44640 1.26131 1.17402 0.86665 0.82277 0.79271 0.80924 1.21162 1.21673 1.20221 1.23352 0.96741 0.80536 1.02902 1.21700 0.95058 0.98730 0.98830 1.21387 0.93620 0.97707 0.96843 1.18952 0.94804 0.94009 1.00680 1.20786 0.92106 0.98214 1.01830 0.90778 0.91410 0.91152 0.84989 0.83805 0.91440 0.90811 0.91748 0.91841 0.93414 0.80319 0.93042 0.91450 0.89495 0.83422 0.83919 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.98 36.01 0.36 -0.36 16 2 C -0.07 -0.67 5.85 -104.93 -0.61 -1.29 16 3 C -0.11 -1.09 9.58 -39.94 -0.38 -1.47 16 4 C -0.07 -0.92 9.99 -39.41 -0.39 -1.31 16 5 C 0.12 1.68 6.61 -84.85 -0.56 1.12 16 6 N -0.42 -6.82 6.78 -7.54 -0.05 -6.87 16 7 C 0.12 1.88 6.73 -82.95 -0.56 1.33 16 8 C 0.58 10.29 7.84 -12.13 -0.10 10.19 16 9 O -0.55 -10.61 16.54 5.36 0.09 -10.52 16 10 N -0.59 -10.24 3.34 -171.26 -0.57 -10.81 16 11 C 0.11 1.79 6.33 -2.53 -0.02 1.77 16 12 C -0.12 -1.79 3.51 -88.47 -0.31 -2.10 16 13 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 14 C -0.13 -1.99 8.98 37.16 0.33 -1.65 16 15 C 0.17 3.14 3.39 -66.10 -0.22 2.92 16 16 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 17 N -0.74 -16.47 4.26 -51.65 -0.22 -16.69 16 18 C -0.24 -6.55 10.44 -15.06 -0.16 -6.71 16 19 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 20 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 21 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 22 Si 0.88 21.86 27.74 -169.99 -4.71 17.15 16 23 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 26 C 0.09 1.59 5.15 -2.92 -0.02 1.58 16 27 C -0.12 -1.61 9.54 -39.44 -0.38 -1.98 16 28 C -0.07 -0.76 9.88 -39.26 -0.39 -1.15 16 29 C -0.08 -1.00 5.75 -106.71 -0.61 -1.61 16 30 C -0.11 -1.07 9.37 -39.52 -0.37 -1.44 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 33 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 37 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 38 H 0.06 1.11 6.27 -51.93 -0.33 0.78 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.36 8.17 4.11 -40.82 -0.17 8.01 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.07 1.12 7.40 -51.93 -0.38 0.74 16 44 H 0.09 1.79 7.45 -51.93 -0.39 1.40 16 45 H 0.15 1.77 7.60 -52.48 -0.40 1.37 16 46 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -32.73 382.08 -10.14 -42.88 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.73 Total: 8.88 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -4.48 Total: -2.00 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.07 Total: -62.15 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.73 -10.14 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054890435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.145 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds