Wall clock time and date at job start Tue Mar 31 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39444 * 119.53906 * 2 1 4 4 C 1.35995 * 121.07802 * 179.97438 * 3 2 1 5 5 C 1.40819 * 119.74040 * 359.97438 * 4 3 2 6 6 N 1.33267 * 120.98213 * 180.27417 * 5 4 3 7 7 C 1.31881 * 121.29992 * 180.27333 * 6 5 4 8 8 C 1.48273 * 119.23997 * 179.71170 * 7 6 5 9 9 O 1.21501 * 119.99666 * 179.72855 * 8 7 6 10 10 N 1.34774 * 120.00352 * 359.73488 * 8 7 6 11 11 C 1.47425 * 125.65138 * 179.97438 * 10 8 7 12 12 C 1.54908 * 104.92961 * 204.15299 * 11 10 8 13 13 H 1.09008 * 111.00494 * 81.01141 * 12 11 10 14 14 C 1.52999 * 111.00368 * 204.85960 * 12 11 10 15 15 C 1.55154 * 101.58289 * 322.93718 * 12 11 10 16 16 H 1.09002 * 110.72290 * 153.86663 * 15 12 11 17 17 N 1.46499 * 110.71955 * 277.13799 * 15 12 11 18 18 C 1.36941 * 120.00165 * 204.99816 * 17 15 12 19 19 H 1.08007 * 119.99638 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00136 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99825 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00054 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47237 * 89.99515 * 22 20 18 24 24 H 1.48496 * 109.46898 * 209.99624 * 22 20 18 25 25 H 1.48498 * 109.46892 * 329.99466 * 22 20 18 26 26 C 1.47290 * 125.79121 * 359.97438 * 10 8 7 27 27 C 1.40278 * 121.51295 * 359.43911 * 7 6 5 28 28 C 1.36496 * 119.82474 * 0.27729 * 27 7 6 29 29 C 1.40758 * 118.24383 * 359.97438 * 28 27 7 30 30 C 1.36134 * 119.54294 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46902 * 90.00107 * 1 2 3 32 32 H 1.09000 * 109.46761 * 209.99589 * 1 2 3 33 33 H 1.09000 * 109.47227 * 330.00328 * 1 2 3 34 34 H 1.07994 * 119.45590 * 359.97438 * 3 2 1 35 35 H 1.08007 * 120.12726 * 179.97438 * 4 3 2 36 36 H 1.09002 * 110.36696 * 85.25946 * 11 10 8 37 37 H 1.08995 * 110.36608 * 323.04783 * 11 10 8 38 38 H 1.09001 * 109.47276 * 58.55057 * 14 12 11 39 39 H 1.09003 * 109.46690 * 178.54597 * 14 12 11 40 40 H 1.08998 * 109.47248 * 298.54758 * 14 12 11 41 41 H 0.96996 * 120.00138 * 25.00080 * 17 15 12 42 42 H 0.97000 * 119.99898 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.85762 * 59.50172 * 26 10 8 44 44 H 1.08995 * 110.00297 * 298.43119 * 26 10 8 45 45 H 1.08003 * 120.08749 * 180.25465 * 27 7 6 46 46 H 1.08001 * 120.87968 * 179.97438 * 28 27 7 47 47 H 1.07994 * 120.17499 * 0.06910 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2132 0.0000 4 6 3.5540 1.2497 0.0005 5 6 4.2851 0.0462 0.0016 6 7 5.6178 0.0531 0.0076 7 6 6.3088 -1.0702 0.0033 8 6 7.7903 -1.0091 0.0038 9 8 8.4405 -2.0355 0.0049 10 7 8.4156 0.1847 0.0032 11 6 9.8755 0.3901 0.0042 12 6 10.0800 1.7986 0.6155 13 1 10.0308 1.7631 1.7039 14 6 11.4012 2.4127 0.1483 15 6 8.8692 2.5716 0.0291 16 1 8.5903 3.4015 0.6784 17 7 9.1645 3.0473 -1.3247 18 6 8.5047 4.1373 -1.8265 19 1 7.7669 4.6465 -1.2240 20 6 8.7848 4.5884 -3.1090 21 7 8.1502 5.6357 -3.5915 22 14 10.0613 3.7081 -4.1507 23 1 9.4028 2.6360 -4.9394 24 1 10.7021 4.6791 -5.0736 25 1 11.0939 3.1095 -3.2672 26 6 7.7569 1.5022 0.0016 27 6 5.6744 -2.3213 0.0039 28 6 4.3112 -2.3912 0.0034 29 6 3.5824 -1.1870 0.0027 30 6 2.1783 -1.1844 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6382 2.1388 -0.0004 35 1 4.0708 2.1981 0.0001 36 1 10.2637 0.3584 -1.0139 37 1 10.3644 -0.3652 0.6195 38 1 11.4073 2.4768 -0.9398 39 1 11.5073 3.4115 0.5717 40 1 12.2299 1.7874 0.4802 41 1 9.8273 2.5902 -1.8656 42 1 8.3462 5.9512 -4.4876 43 1 7.1253 1.6014 0.8844 44 1 7.1547 1.6168 -0.8997 45 1 6.2630 -3.2268 0.0045 46 1 3.8051 -3.3453 0.0034 47 1 1.6337 -2.1169 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054890435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:12 Heat of formation + Delta-G solvation = 26.113213 kcal Electronic energy + Delta-G solvation = -29280.253578 eV Core-core repulsion = 25427.618160 eV Total energy + Delta-G solvation = -3852.635418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15650 -40.99803 -39.28489 -38.20301 -35.87324 -34.72513 -33.99022 -33.07198 -32.52442 -31.29640 -29.72111 -28.83854 -27.18872 -25.63299 -25.23642 -24.32710 -23.24019 -23.08075 -20.96276 -20.89957 -19.83319 -19.01733 -18.53298 -17.83551 -17.32263 -16.93611 -16.55815 -16.26205 -15.94537 -15.71664 -15.37201 -15.28326 -15.10785 -14.67348 -14.62697 -14.43654 -14.20533 -14.11491 -14.04548 -13.62024 -13.57998 -13.22811 -13.12731 -13.05701 -12.88467 -12.46790 -12.41446 -12.27853 -12.21617 -12.12586 -11.95643 -11.66413 -11.59380 -11.53446 -11.34666 -11.07766 -10.48074 -9.88067 -9.64757 -9.30774 -9.20574 -8.01762 -5.33910 -0.86279 -0.37344 0.89193 1.31889 1.33855 1.36841 1.42929 1.82739 2.13528 2.46559 2.87738 3.04077 3.28548 3.41370 3.55394 3.56355 3.67322 3.76526 3.81017 3.88470 3.98394 4.01603 4.15622 4.31821 4.36786 4.40431 4.57854 4.62515 4.65181 4.66467 4.75463 4.82080 4.87707 4.89099 4.98332 5.00372 5.01171 5.06110 5.16906 5.22554 5.24818 5.30632 5.31972 5.45932 5.49603 5.54961 5.79836 5.85156 6.22248 6.35018 6.58030 6.96769 7.07703 7.83053 8.01409 9.19543 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.003710 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.678615 B = 7546.322564 C = 9244.015990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.073 4.073 3 C -0.095 4.095 4 C -0.105 4.105 5 C 0.090 3.910 6 N -0.451 5.451 7 C 0.089 3.911 8 C 0.572 3.428 9 O -0.569 6.569 10 N -0.592 5.592 11 C 0.108 3.892 12 C -0.101 4.101 13 H 0.112 0.888 14 C -0.131 4.131 15 C 0.163 3.837 16 H 0.083 0.917 17 N -0.737 5.737 18 C -0.220 4.220 19 H 0.066 0.934 20 C -0.056 4.056 21 N -0.980 5.980 22 Si 0.937 3.063 23 H -0.292 1.292 24 H -0.295 1.295 25 H -0.248 1.248 26 C 0.111 3.889 27 C -0.136 4.136 28 C -0.049 4.049 29 C -0.092 4.092 30 C -0.105 4.105 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.153 0.847 35 H 0.127 0.873 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.364 0.636 42 H 0.256 0.744 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.156 0.844 46 H 0.188 0.812 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 -16.319 11.959 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.073 4.073 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.033 4.033 6 N -0.163 5.163 7 C -0.063 4.063 8 C 0.360 3.640 9 O -0.449 6.449 10 N -0.322 5.322 11 C -0.014 4.014 12 C -0.121 4.121 13 H 0.130 0.870 14 C -0.188 4.188 15 C 0.053 3.947 16 H 0.101 0.899 17 N -0.380 5.380 18 C -0.351 4.351 19 H 0.084 0.916 20 C -0.247 4.247 21 N -0.631 5.631 22 Si 0.766 3.234 23 H -0.219 1.219 24 H -0.221 1.221 25 H -0.172 1.172 26 C -0.015 4.015 27 C -0.157 4.157 28 C -0.075 4.075 29 C -0.094 4.094 30 C -0.123 4.123 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.171 0.829 35 H 0.145 0.855 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.199 0.801 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.173 0.827 46 H 0.205 0.795 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.876 -15.856 11.958 23.140 hybrid contribution 0.521 -0.555 -1.325 1.528 sum -11.355 -16.411 10.633 22.612 Atomic orbital electron populations 1.20934 0.88054 1.04484 1.03625 1.20191 0.98391 0.92302 0.96408 1.21192 0.93059 0.99674 0.97593 1.21022 0.94844 0.96503 0.99980 1.19275 0.88733 0.94579 1.00731 1.68086 1.08410 1.29904 1.09917 1.21214 0.93321 0.90881 1.00910 1.17944 0.86689 0.82341 0.76977 1.90706 1.66855 1.33830 1.53502 1.48471 1.08457 1.06078 1.69197 1.22436 0.79800 0.98230 1.00941 1.22649 0.95693 0.92450 1.01268 0.87021 1.21569 0.95285 1.01160 1.00817 1.21525 0.92928 0.94193 0.86075 0.89926 1.42749 1.47368 1.33777 1.14058 1.19042 1.15296 1.03339 0.97434 0.91632 1.25297 1.01966 0.98817 0.98656 1.69849 1.47077 1.28428 1.17761 0.85690 0.80551 0.77812 0.79393 1.21866 1.22119 1.17234 1.22945 0.96047 0.80845 1.01631 1.21807 0.96262 0.97717 0.99928 1.21850 0.92631 0.99054 0.93934 1.19257 0.96206 0.93491 1.00492 1.21203 0.90929 0.99984 1.00215 0.89877 0.89566 0.90242 0.82941 0.85478 0.92495 0.89296 0.94147 0.91752 0.90413 0.80145 0.93510 0.90670 0.92880 0.82663 0.79454 0.81601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.98 71.24 0.71 -0.25 16 2 C -0.07 -1.13 5.85 -20.06 -0.12 -1.25 16 3 C -0.10 -1.85 9.58 22.04 0.21 -1.64 16 4 C -0.10 -2.79 9.99 22.38 0.22 -2.56 16 5 C 0.09 2.65 6.61 40.47 0.27 2.92 16 6 N -0.45 -15.27 6.78 -177.77 -1.21 -16.48 16 7 C 0.09 2.94 6.73 42.30 0.28 3.23 16 8 C 0.57 20.84 7.84 86.91 0.68 21.52 16 9 O -0.57 -22.17 16.54 -3.72 -0.06 -22.23 16 10 N -0.59 -20.93 3.34 -814.03 -2.71 -23.65 16 11 C 0.11 3.37 6.33 86.85 0.55 3.92 16 12 C -0.10 -2.90 3.51 -9.40 -0.03 -2.93 16 13 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 14 C -0.13 -3.60 8.98 71.98 0.65 -2.96 16 15 C 0.16 5.95 3.39 46.18 0.16 6.11 16 16 H 0.08 3.01 8.09 -2.39 -0.02 2.99 16 17 N -0.74 -33.35 4.26 -317.32 -1.35 -34.70 16 18 C -0.22 -12.18 10.44 84.03 0.88 -11.30 16 19 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 20 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 21 N -0.98 -62.37 13.97 21.65 0.30 -62.07 16 22 Si 0.94 45.96 27.74 68.60 1.90 47.86 16 23 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 25 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 26 C 0.11 4.06 5.15 86.68 0.45 4.51 16 27 C -0.14 -3.50 9.54 22.36 0.21 -3.28 16 28 C -0.05 -0.96 9.88 22.48 0.22 -0.73 16 29 C -0.09 -2.08 5.75 -21.22 -0.12 -2.21 16 30 C -0.11 -1.66 9.37 22.31 0.21 -1.46 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.45 8.07 -2.39 -0.02 0.43 16 33 H 0.08 0.55 8.08 -2.39 -0.02 0.54 16 34 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.06 1.90 8.04 -2.39 -0.02 1.88 16 37 H 0.09 2.53 8.03 -2.39 -0.02 2.51 16 38 H 0.04 1.31 6.27 -2.39 -0.01 1.30 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.36 16.32 4.11 -92.71 -0.38 15.94 16 42 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.08 2.62 7.40 -2.38 -0.02 2.61 16 44 H 0.05 2.32 7.45 -2.39 -0.02 2.31 16 45 H 0.16 3.61 7.60 -2.91 -0.02 3.59 16 46 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 47 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -75.11 382.08 3.31 -71.80 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.55 Total: 30.61 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 5.89 Total: 8.85 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -4.97 Total: -136.89 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.06 Total: -22.23 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.86 kcal Total: -75.11 3.31 -71.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054890435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.914 kcal (2) G-P(sol) polarization free energy of solvation -75.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds