Wall clock time and date at job start Tue Mar 31 2020 22:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36544 * 120.09308 * 2 1 4 4 C 1.40719 * 118.24599 * 180.25672 * 3 2 1 5 5 C 1.40428 * 121.27387 * 179.67645 * 4 3 2 6 6 C 1.36125 * 119.64623 * 180.02562 * 5 4 3 7 7 C 1.39441 * 120.91635 * 0.02562 * 6 5 4 8 8 C 1.35987 * 121.09381 * 359.97438 * 7 6 5 9 9 C 1.40832 * 119.73695 * 0.04659 * 8 7 6 10 10 N 1.33242 * 121.00039 * 179.97438 * 9 8 7 11 11 C 1.31907 * 121.29615 * 180.02562 * 10 9 8 12 12 C 1.48277 * 119.23437 * 179.97438 * 11 10 9 13 13 O 1.21505 * 119.99543 * 174.41098 * 12 11 10 14 14 N 1.34771 * 120.00192 * 354.41379 * 12 11 10 15 15 C 1.47023 * 125.64744 * 0.02562 * 14 12 11 16 16 C 1.54323 * 107.26937 * 180.79457 * 15 14 12 17 17 H 1.09001 * 110.72114 * 263.83212 * 16 15 14 18 18 N 1.46501 * 110.72179 * 140.55806 * 16 15 14 19 19 C 1.36931 * 119.99906 * 86.45111 * 18 16 15 20 20 H 1.08008 * 120.00278 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00309 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99439 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00378 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47087 * 90.00257 * 23 21 19 25 25 H 1.48500 * 109.47450 * 210.00062 * 23 21 19 26 26 H 1.48499 * 109.47282 * 330.00475 * 23 21 19 27 27 C 1.55158 * 102.94460 * 22.19482 * 16 15 14 28 28 H 1.08995 * 111.00621 * 82.56982 * 27 16 15 29 29 C 1.53001 * 111.00804 * 206.38540 * 27 16 15 30 30 C 1.47426 * 125.64730 * 179.71678 * 14 12 11 31 31 H 1.09001 * 109.46947 * 263.39147 * 1 2 3 32 32 H 1.08994 * 109.47478 * 23.39534 * 1 2 3 33 33 H 1.09004 * 109.47110 * 143.39712 * 1 2 3 34 34 H 1.08003 * 120.87282 * 359.94463 * 3 2 1 35 35 H 1.08000 * 120.17368 * 0.05322 * 5 4 3 36 36 H 1.08002 * 119.54283 * 180.02562 * 6 5 4 37 37 H 1.08007 * 119.45085 * 179.97438 * 7 6 5 38 38 H 1.08001 * 120.13319 * 179.97438 * 8 7 6 39 39 H 1.08996 * 109.88432 * 300.20983 * 15 14 12 40 40 H 1.08998 * 109.88199 * 61.22706 * 15 14 12 41 41 H 0.97001 * 119.99781 * 266.45633 * 18 16 15 42 42 H 0.97003 * 119.99546 * 180.02562 * 22 21 19 43 43 H 1.09009 * 109.46684 * 59.99969 * 29 27 16 44 44 H 1.08991 * 109.47222 * 179.97438 * 29 27 16 45 45 H 1.08997 * 109.46972 * 300.00471 * 29 27 16 46 46 H 1.09003 * 110.36498 * 274.97190 * 30 14 12 47 47 H 1.09000 * 110.36821 * 37.29667 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 -0.0056 5 6 4.3653 2.3121 -0.0127 6 6 5.7241 2.2296 -0.0184 7 6 6.3667 0.9921 -0.0179 8 6 5.6569 -0.1678 -0.0111 9 6 4.2492 -0.1253 -0.0055 10 7 3.5289 -1.2462 0.0007 11 6 2.2102 -1.2133 0.0055 12 6 1.4540 -2.4887 0.0117 13 8 0.2437 -2.4767 0.1187 14 7 2.1090 -3.6611 -0.1012 15 6 3.5644 -3.8199 -0.2360 16 6 3.8513 -5.3317 -0.3533 17 1 4.1169 -5.7503 0.6174 18 7 4.9091 -5.5839 -1.3350 19 6 6.2230 -5.5415 -0.9519 20 1 6.4796 -5.3225 0.0742 21 6 7.2253 -5.7799 -1.8821 22 7 6.9127 -6.0463 -3.1326 23 14 9.0177 -5.7213 -1.3597 24 1 9.4491 -7.0720 -0.9182 25 1 9.8538 -5.2851 -2.5068 26 1 9.1754 -4.7603 -0.2386 27 6 2.4966 -5.9053 -0.8464 28 1 2.3972 -5.7988 -1.9266 29 6 2.3341 -7.3672 -0.4253 30 6 1.4854 -4.9969 -0.1035 31 1 -0.3633 -0.1183 1.0209 32 1 -0.3634 0.9431 -0.4080 33 1 -0.3633 -0.8250 -0.6128 34 1 1.6674 2.1257 -0.0009 35 1 3.8800 3.2769 -0.0131 36 1 6.3125 3.1352 -0.0235 37 1 7.4461 0.9543 -0.0230 38 1 6.1706 -1.1178 -0.0112 39 1 3.9119 -3.3060 -1.1322 40 1 4.0647 -3.4124 0.6425 41 1 4.6786 -5.7809 -2.2565 42 1 7.6131 -6.2133 -3.7826 43 1 2.3686 -7.4381 0.6620 44 1 1.3762 -7.7442 -0.7834 45 1 3.1417 -7.9607 -0.8538 46 1 1.3384 -5.3488 0.9177 47 1 0.5353 -4.9712 -0.6372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054922154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:34 Heat of formation + Delta-G solvation = 26.707353 kcal Electronic energy + Delta-G solvation = -29533.761475 eV Core-core repulsion = 25681.151821 eV Total energy + Delta-G solvation = -3852.609654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23844 -40.89921 -39.20576 -37.89436 -35.97780 -35.20708 -33.85733 -32.68674 -32.46061 -31.30220 -29.17331 -28.22110 -27.61525 -26.12023 -25.58779 -23.57492 -23.12515 -22.95358 -21.41249 -21.10566 -19.10952 -18.95278 -18.79331 -17.70702 -17.29647 -17.02243 -16.56781 -16.25709 -15.78167 -15.49940 -15.33630 -15.23202 -15.15689 -14.68339 -14.55932 -14.23173 -14.15137 -14.00611 -13.95900 -13.70101 -13.48194 -13.17139 -12.97277 -12.85147 -12.82637 -12.62448 -12.58641 -12.49225 -12.22686 -12.11495 -12.03075 -11.68724 -11.44150 -11.38475 -11.03742 -10.97983 -10.37360 -9.88456 -9.56728 -9.22510 -9.03634 -7.93453 -5.22872 -0.84689 -0.36525 0.91065 1.34383 1.48214 1.49099 1.57529 1.83943 2.15718 2.56560 2.90442 3.05097 3.36494 3.42379 3.57164 3.67479 3.72516 3.80934 3.82781 3.93336 4.07942 4.19613 4.22215 4.34393 4.37679 4.39671 4.47147 4.59609 4.63944 4.65650 4.76067 4.84697 4.89791 4.91685 4.99133 5.04368 5.07622 5.14210 5.18328 5.24398 5.32540 5.34146 5.37682 5.45557 5.49038 5.54697 5.56205 5.86027 6.26667 6.37044 6.60724 7.00300 7.34377 8.05436 8.30799 9.29737 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008574 B = 0.004575 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.965072 B = 6119.134493 C = 9085.088172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.103 4.103 3 C -0.058 4.058 4 C -0.093 4.093 5 C -0.100 4.100 6 C -0.100 4.100 7 C -0.098 4.098 8 C -0.113 4.113 9 C 0.088 3.912 10 N -0.454 5.454 11 C 0.086 3.914 12 C 0.571 3.429 13 O -0.550 6.550 14 N -0.596 5.596 15 C 0.117 3.883 16 C 0.166 3.834 17 H 0.067 0.933 18 N -0.720 5.720 19 C -0.237 4.237 20 H 0.076 0.924 21 C -0.069 4.069 22 N -0.968 5.968 23 Si 0.967 3.033 24 H -0.287 1.287 25 H -0.297 1.297 26 H -0.269 1.269 27 C -0.104 4.104 28 H 0.070 0.930 29 C -0.126 4.126 30 C 0.116 3.884 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.187 0.813 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.152 0.848 38 H 0.118 0.882 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 17.294 8.232 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.084 4.084 4 C -0.095 4.095 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.132 4.132 9 C -0.036 4.036 10 N -0.165 5.165 11 C -0.066 4.066 12 C 0.359 3.641 13 O -0.430 6.430 14 N -0.327 5.327 15 C -0.009 4.009 16 C 0.056 3.944 17 H 0.084 0.916 18 N -0.359 5.359 19 C -0.369 4.369 20 H 0.094 0.906 21 C -0.261 4.261 22 N -0.619 5.619 23 Si 0.797 3.203 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.194 1.194 27 C -0.123 4.123 28 H 0.088 0.912 29 C -0.183 4.183 30 C -0.006 4.006 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.205 0.795 35 H 0.188 0.812 36 H 0.185 0.815 37 H 0.170 0.830 38 H 0.136 0.864 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.105 0.895 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.472 16.555 8.406 20.844 hybrid contribution 0.970 0.135 -0.490 1.095 sum -8.502 16.690 7.916 20.335 Atomic orbital electron populations 1.20955 0.87782 1.03868 1.03516 1.20723 0.99276 0.91819 0.98810 1.21759 0.91960 0.99158 0.95489 1.19298 0.95150 0.94537 1.00519 1.21413 0.94263 0.97370 0.98758 1.21450 0.94993 0.98507 0.96851 1.21296 1.01740 0.91720 0.97051 1.21025 0.91246 1.00320 1.00586 1.19285 0.94814 0.88582 1.00906 1.68123 1.06909 1.31620 1.09825 1.21217 0.89937 0.94091 1.01383 1.17906 0.86191 0.82672 0.77284 1.90675 1.13122 1.86620 1.52580 1.48467 1.09346 1.05873 1.69027 1.22842 0.78198 0.99260 1.00633 1.21533 0.88177 0.91198 0.93497 0.91553 1.42424 1.01511 1.83547 1.08381 1.19567 0.83855 1.38720 0.94740 0.90649 1.25475 1.01778 1.03216 0.95638 1.69818 1.32637 1.56525 1.02872 0.85230 0.80491 0.77781 0.76834 1.21399 1.22426 1.19388 1.22537 0.93690 0.96371 0.99747 0.91160 1.21558 1.02126 0.92781 1.01854 1.22430 0.96625 0.80094 1.01433 0.90677 0.89183 0.90683 0.79540 0.81163 0.81492 0.83029 0.86412 0.93487 0.92348 0.79308 0.94094 0.91400 0.90595 0.93382 0.89527 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.36 8.68 71.23 0.62 -1.74 16 2 C -0.10 -2.76 5.89 -19.78 -0.12 -2.88 16 3 C -0.06 -1.21 9.50 22.48 0.21 -0.99 16 4 C -0.09 -2.22 5.75 -21.22 -0.12 -2.34 16 5 C -0.10 -1.59 9.77 22.31 0.22 -1.38 16 6 C -0.10 -1.53 9.96 22.07 0.22 -1.31 16 7 C -0.10 -2.05 9.94 22.04 0.22 -1.83 16 8 C -0.11 -3.33 9.99 22.38 0.22 -3.11 16 9 C 0.09 2.78 6.61 40.48 0.27 3.05 16 10 N -0.45 -16.47 6.79 -177.77 -1.21 -17.68 16 11 C 0.09 2.95 6.71 42.29 0.28 3.23 16 12 C 0.57 20.67 7.78 86.92 0.68 21.35 16 13 O -0.55 -20.08 13.48 -3.73 -0.05 -20.13 16 14 N -0.60 -21.39 3.33 -814.70 -2.71 -24.10 16 15 C 0.12 4.65 5.15 86.73 0.45 5.10 16 16 C 0.17 6.65 3.06 46.18 0.14 6.79 16 17 H 0.07 2.63 8.02 -2.39 -0.02 2.61 16 18 N -0.72 -35.87 5.18 -317.32 -1.64 -37.52 16 19 C -0.24 -12.92 9.98 84.03 0.84 -12.09 16 20 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 21 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 22 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 23 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C -0.10 -3.39 3.25 -9.40 -0.03 -3.42 16 28 H 0.07 2.50 8.00 -2.39 -0.02 2.48 16 29 C -0.13 -3.46 9.31 71.98 0.67 -2.79 16 30 C 0.12 3.52 6.38 86.86 0.55 4.07 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.38 8.04 -2.39 -0.02 1.36 16 33 H 0.07 2.08 5.81 -2.39 -0.01 2.07 16 34 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 39 H 0.05 2.17 7.46 -2.39 -0.02 2.15 16 40 H 0.06 2.41 7.37 -2.39 -0.02 2.39 16 41 H 0.37 20.23 7.71 -92.71 -0.72 19.51 16 42 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.07 1.67 8.08 -2.38 -0.02 1.65 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.09 2.33 7.99 -2.39 -0.02 2.31 16 47 H 0.08 2.42 8.04 -2.39 -0.02 2.40 16 Total: -1.00 -71.44 383.25 2.76 -68.68 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.27 Total: 35.27 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.79 Total: 6.31 kcal Atomic # 7 Polarization: -132.46 SS G_CDS: -5.28 Total: -137.74 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -71.44 2.76 -68.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054922154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.386 kcal (2) G-P(sol) polarization free energy of solvation -71.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds