Wall clock time and date at job start Tue Mar 31 2020 22:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36540 * 120.09091 * 2 1 4 4 C 1.40720 * 118.23796 * 180.25805 * 3 2 1 5 5 C 1.40426 * 121.26699 * 179.67849 * 4 3 2 6 6 C 1.36138 * 119.64176 * 180.02562 * 5 4 3 7 7 C 1.39436 * 120.91687 * 0.02562 * 6 5 4 8 8 C 1.35991 * 121.09368 * 359.97138 * 7 6 5 9 9 C 1.40825 * 119.73793 * 0.04767 * 8 7 6 10 10 N 1.33241 * 121.00475 * 179.97438 * 9 8 7 11 11 C 1.31905 * 121.30410 * 180.02562 * 10 9 8 12 12 C 1.48274 * 119.24234 * 179.97438 * 11 10 9 13 13 O 1.21499 * 119.99766 * 104.64908 * 12 11 10 14 14 N 1.34776 * 119.99736 * 284.65087 * 12 11 10 15 15 C 1.47018 * 125.64567 * 179.97438 * 14 12 11 16 16 C 1.54330 * 107.27344 * 178.90725 * 15 14 12 17 17 H 1.09002 * 110.71802 * 96.34536 * 16 15 14 18 18 C 1.52996 * 110.71884 * 219.44684 * 16 15 14 19 19 C 1.55157 * 103.09620 * 337.89653 * 16 15 14 20 20 H 1.09003 * 110.99915 * 153.48864 * 19 16 15 21 21 N 1.46497 * 111.00362 * 277.33705 * 19 16 15 22 22 C 1.36941 * 120.00079 * 205.00002 * 21 19 16 23 23 H 1.08004 * 119.99783 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00312 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99715 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 119.99973 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47417 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47079 * 120.00547 * 26 24 22 29 29 H 1.48500 * 109.47191 * 239.99794 * 26 24 22 30 30 C 1.47424 * 125.65300 * 359.95920 * 14 12 11 31 31 H 1.09005 * 109.47140 * 264.95449 * 1 2 3 32 32 H 1.09002 * 109.47278 * 24.95672 * 1 2 3 33 33 H 1.09005 * 109.47049 * 144.95476 * 1 2 3 34 34 H 1.08003 * 120.88013 * 359.94162 * 3 2 1 35 35 H 1.07999 * 120.17926 * 0.02562 * 5 4 3 36 36 H 1.07999 * 119.53531 * 179.97438 * 6 5 4 37 37 H 1.08005 * 119.44892 * 179.97438 * 7 6 5 38 38 H 1.08003 * 120.12822 * 180.02562 * 8 7 6 39 39 H 1.09000 * 109.88324 * 59.49063 * 15 14 12 40 40 H 1.09002 * 110.01477 * 298.39651 * 15 14 12 41 41 H 1.08995 * 109.47260 * 56.15733 * 18 16 15 42 42 H 1.08996 * 109.47030 * 296.14995 * 18 16 15 43 43 H 1.09001 * 109.46972 * 176.15638 * 18 16 15 44 44 H 0.97004 * 120.00315 * 25.00367 * 21 19 16 45 45 H 0.97000 * 119.99726 * 179.97438 * 25 24 22 46 46 H 1.09004 * 110.35918 * 323.00274 * 30 14 12 47 47 H 1.09001 * 110.36763 * 85.20798 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5981 1.1359 -0.0056 5 6 4.3653 2.3120 -0.0127 6 6 5.7242 2.2294 -0.0184 7 6 6.3667 0.9919 -0.0180 8 6 5.6568 -0.1680 -0.0112 9 6 4.2492 -0.1255 -0.0055 10 7 3.5288 -1.2463 0.0007 11 6 2.2101 -1.2134 0.0056 12 6 1.4538 -2.4887 0.0119 13 8 0.9188 -2.8727 1.0329 14 7 1.3597 -3.2219 -1.1151 15 6 0.6448 -4.4995 -1.2489 16 6 0.7858 -4.9520 -2.7176 17 1 1.6098 -5.6572 -2.8264 18 6 -0.5209 -5.5671 -3.2224 19 6 1.0941 -3.6279 -3.4653 20 1 1.6598 -3.8171 -4.3777 21 7 -0.1376 -2.8905 -3.7570 22 6 -0.1766 -2.0098 -4.8050 23 1 0.7007 -1.8592 -5.4166 24 6 -1.3439 -1.3115 -5.0818 25 7 -2.4132 -1.4954 -4.3366 26 14 -1.3972 -0.1108 -6.5116 27 1 -0.0751 -0.0867 -7.1874 28 1 -2.4394 -0.5390 -7.4790 29 1 -1.7199 1.2476 -6.0056 30 6 1.9564 -2.8754 -2.4180 31 1 -0.3634 -0.0904 1.0237 32 1 -0.3634 0.9317 -0.4336 33 1 -0.3633 -0.8414 -0.5901 34 1 1.6675 2.1257 -0.0009 35 1 3.8800 3.2768 -0.0135 36 1 6.3126 3.1350 -0.0243 37 1 7.4461 0.9540 -0.0231 38 1 6.1706 -1.1180 -0.0105 39 1 -0.4082 -4.3627 -1.0027 40 1 1.0861 -5.2450 -0.5874 41 1 -1.3330 -4.8515 -3.0934 42 1 -0.7399 -6.4714 -2.6547 43 1 -0.4209 -5.8165 -4.2787 44 1 -0.9257 -3.0260 -3.2079 45 1 -3.2288 -1.0072 -4.5298 46 1 1.9043 -1.7995 -2.5848 47 1 2.9907 -3.2161 -2.4641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054922155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:39 Heat of formation + Delta-G solvation = 34.717365 kcal Electronic energy + Delta-G solvation = -29837.022111 eV Core-core repulsion = 25984.759798 eV Total energy + Delta-G solvation = -3852.262313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.09536 -39.63183 -37.83299 -36.83850 -34.16716 -33.88514 -32.44764 -31.71088 -30.55758 -30.30910 -27.79199 -27.12093 -26.58388 -24.67627 -23.84272 -22.60449 -22.17542 -21.99870 -19.85386 -19.26617 -18.01195 -17.75113 -17.17342 -16.71295 -16.15990 -15.51821 -15.20769 -14.66663 -14.56161 -14.42410 -14.25734 -13.98831 -13.71685 -13.28335 -13.07315 -13.06541 -12.97788 -12.93655 -12.58391 -12.24304 -12.12897 -11.99042 -11.72560 -11.64115 -11.54412 -11.44024 -11.13864 -10.97160 -10.74672 -10.47916 -10.41528 -10.28029 -10.08009 -9.95179 -9.68803 -9.40769 -9.08017 -8.69167 -8.32443 -8.27468 -7.06240 -5.86193 -3.15708 0.25243 0.67521 1.91410 2.60379 2.84467 3.19752 3.36326 3.43133 3.44725 3.98787 4.23944 4.45119 4.50140 4.58098 4.66709 4.81811 4.90100 4.99229 5.04278 5.15365 5.18091 5.26404 5.32397 5.55264 5.57701 5.61623 5.66603 5.76544 5.83168 5.84806 5.89650 5.93853 5.97842 6.05517 6.19074 6.21431 6.24595 6.27288 6.31523 6.34508 6.36278 6.47549 6.50449 6.58970 6.70788 6.75026 6.93287 7.62359 7.74585 7.79731 8.31355 8.33703 9.43732 9.98262 10.33713 11.35671 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.004176 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.420161 B = 6703.447570 C = 8078.693053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 C -0.065 4.065 4 C -0.089 4.089 5 C -0.098 4.098 6 C -0.115 4.115 7 C -0.109 4.109 8 C -0.084 4.084 9 C 0.121 3.879 10 N -0.444 5.444 11 C 0.147 3.853 12 C 0.592 3.408 13 O -0.538 6.538 14 N -0.587 5.587 15 C 0.116 3.884 16 C -0.115 4.115 17 H 0.080 0.920 18 C -0.131 4.131 19 C 0.172 3.828 20 H 0.076 0.924 21 N -0.707 5.707 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.927 5.927 26 Si 0.904 3.096 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 C 0.072 3.928 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.059 0.941 44 H 0.387 0.613 45 H 0.255 0.745 46 H 0.074 0.926 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.463 3.181 7.862 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 C -0.090 4.090 4 C -0.091 4.091 5 C -0.116 4.116 6 C -0.133 4.133 7 C -0.129 4.129 8 C -0.103 4.103 9 C -0.002 4.002 10 N -0.153 5.153 11 C -0.009 4.009 12 C 0.378 3.622 13 O -0.415 6.415 14 N -0.318 5.318 15 C -0.006 4.006 16 C -0.135 4.135 17 H 0.098 0.902 18 C -0.189 4.189 19 C 0.059 3.941 20 H 0.094 0.906 21 N -0.348 5.348 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.575 5.575 26 Si 0.735 3.265 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.219 1.219 30 C -0.054 4.054 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.163 0.837 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.222 0.778 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.703 2.337 8.297 16.189 hybrid contribution -0.639 1.627 -0.622 1.855 sum 13.063 3.963 7.675 15.661 Atomic orbital electron populations 1.20850 0.88927 1.04487 1.03060 1.20514 0.98322 0.92228 0.98479 1.21313 0.92410 0.98399 0.96926 1.18933 0.94172 0.94561 1.01437 1.20984 0.94081 0.97067 0.99505 1.20932 0.94619 0.97967 0.99807 1.20866 1.00287 0.92049 0.99664 1.20828 0.91067 0.99332 0.99077 1.18850 0.94154 0.87696 0.99480 1.67888 1.05955 1.30314 1.11170 1.21077 0.89933 0.93538 0.96322 1.17394 0.79907 0.82209 0.82738 1.90774 1.48290 1.70566 1.31879 1.48193 1.51591 1.22061 1.09949 1.22020 0.97227 0.84297 0.97031 1.22548 0.99339 0.98084 0.93503 0.90162 1.21596 0.96785 0.99742 1.00729 1.21406 0.89341 0.89126 0.94200 0.90606 1.42366 1.08891 1.47995 1.35519 1.19273 0.96977 1.15690 1.05628 0.91049 1.24712 0.95969 1.00407 0.99222 1.69669 1.01998 1.45217 1.40585 0.86176 0.77356 0.80917 0.82072 1.20549 1.21819 1.21903 1.23478 0.96760 1.02027 0.83153 0.90344 0.90579 0.90047 0.83746 0.85178 0.85577 0.85335 0.84692 0.91134 0.91952 0.91082 0.93731 0.92201 0.77751 0.93467 0.90717 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.51 36.01 0.34 -1.51 16 2 C -0.09 -1.52 5.89 -104.48 -0.62 -2.13 16 3 C -0.06 -0.89 9.50 -39.26 -0.37 -1.27 16 4 C -0.09 -1.22 5.75 -106.71 -0.61 -1.83 16 5 C -0.10 -1.03 9.77 -39.51 -0.39 -1.41 16 6 C -0.12 -1.05 9.96 -39.89 -0.40 -1.45 16 7 C -0.11 -1.03 9.94 -39.94 -0.40 -1.43 16 8 C -0.08 -1.02 9.99 -39.41 -0.39 -1.41 16 9 C 0.12 1.82 6.61 -84.85 -0.56 1.26 16 10 N -0.44 -7.68 10.25 -7.54 -0.08 -7.76 16 11 C 0.15 2.65 5.41 -82.96 -0.45 2.20 16 12 C 0.59 11.57 5.96 -12.13 -0.07 11.50 16 13 O -0.54 -11.67 17.43 5.37 0.09 -11.58 16 14 N -0.59 -10.72 3.33 -171.33 -0.57 -11.29 16 15 C 0.12 1.94 6.46 -3.06 -0.02 1.92 16 16 C -0.11 -1.77 3.41 -88.78 -0.30 -2.07 16 17 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 18 C -0.13 -2.04 8.75 37.16 0.33 -1.71 16 19 C 0.17 3.15 3.49 -65.66 -0.23 2.92 16 20 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 21 N -0.71 -16.18 4.58 -51.23 -0.23 -16.42 16 22 C -0.24 -6.30 9.96 -15.06 -0.15 -6.45 16 23 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -26.43 13.06 55.49 0.72 -25.70 16 26 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 30 C 0.07 1.28 6.38 -2.41 -0.02 1.27 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.07 8.05 -51.93 -0.42 0.66 16 33 H 0.08 1.54 7.25 -51.93 -0.38 1.16 16 34 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.07 1.25 7.80 -51.93 -0.41 0.85 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.31 6.43 -51.93 -0.33 0.97 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.39 9.57 6.35 -40.82 -0.26 9.32 16 45 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.07 1.50 7.69 -51.93 -0.40 1.10 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -31.35 388.68 -10.44 -41.79 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.81 Total: 10.55 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -4.40 Total: -1.86 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.16 Total: -61.17 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.35 -10.44 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054922155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.511 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds