Wall clock time and date at job start Tue Mar 31 2020 22:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36542 * 120.09528 * 2 1 4 4 C 1.40718 * 118.24222 * 180.25868 * 3 2 1 5 5 C 1.40429 * 121.26742 * 179.68596 * 4 3 2 6 6 C 1.36137 * 119.64438 * 180.02562 * 5 4 3 7 7 C 1.39440 * 120.91725 * 0.02562 * 6 5 4 8 8 C 1.35994 * 121.08944 * 359.93605 * 7 6 5 9 9 C 1.40833 * 119.73944 * 0.08299 * 8 7 6 10 10 N 1.33245 * 120.99994 * 179.91538 * 9 8 7 11 11 C 1.31902 * 121.29576 * 180.02562 * 10 9 8 12 12 C 1.48277 * 119.23671 * 179.97438 * 11 10 9 13 13 O 1.21499 * 119.99974 * 174.36258 * 12 11 10 14 14 N 1.34772 * 120.00037 * 354.36034 * 12 11 10 15 15 C 1.47422 * 125.64710 * 180.02562 * 14 12 11 16 16 C 1.54913 * 104.92644 * 155.84139 * 15 14 12 17 17 H 1.09000 * 111.00407 * 278.98775 * 16 15 14 18 18 C 1.52999 * 111.00439 * 155.13877 * 16 15 14 19 19 C 1.55439 * 101.45376 * 37.00322 * 16 15 14 20 20 H 1.09004 * 110.71335 * 206.14501 * 19 16 15 21 21 N 1.46499 * 110.70759 * 82.88974 * 19 16 15 22 22 C 1.36938 * 120.00063 * 160.00217 * 21 19 16 23 23 H 1.08008 * 120.00157 * 359.97438 * 22 21 19 24 24 C 1.38811 * 120.00148 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00182 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00220 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46985 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47152 * 120.00215 * 26 24 22 29 29 H 1.48499 * 109.47310 * 240.00046 * 26 24 22 30 30 C 1.47020 * 125.64865 * 0.02713 * 14 12 11 31 31 H 1.08994 * 109.47054 * 263.46389 * 1 2 3 32 32 H 1.08999 * 109.46833 * 23.47137 * 1 2 3 33 33 H 1.09000 * 109.46930 * 143.46569 * 1 2 3 34 34 H 1.08003 * 120.87660 * 359.96892 * 3 2 1 35 35 H 1.07993 * 120.17898 * 359.97438 * 5 4 3 36 36 H 1.08000 * 119.53991 * 179.97438 * 6 5 4 37 37 H 1.07994 * 119.45122 * 179.97438 * 7 6 5 38 38 H 1.08002 * 120.12673 * 180.02562 * 8 7 6 39 39 H 1.08998 * 110.36923 * 274.73021 * 15 14 12 40 40 H 1.08995 * 110.36822 * 36.94793 * 15 14 12 41 41 H 1.09004 * 109.47054 * 61.45409 * 18 16 15 42 42 H 1.09008 * 109.46967 * 181.45099 * 18 16 15 43 43 H 1.08997 * 109.47330 * 301.44946 * 18 16 15 44 44 H 0.96998 * 120.00287 * 339.99854 * 21 19 16 45 45 H 0.96993 * 120.00280 * 179.97438 * 25 24 22 46 46 H 1.09001 * 109.88558 * 300.45666 * 30 14 12 47 47 H 1.09001 * 109.88222 * 61.46514 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1813 0.0000 4 6 3.5981 1.1359 -0.0056 5 6 4.3654 2.3120 -0.0125 6 6 5.7242 2.2294 -0.0183 7 6 6.3668 0.9919 -0.0180 8 6 5.6569 -0.1680 -0.0107 9 6 4.2492 -0.1255 -0.0049 10 7 3.5288 -1.2464 0.0006 11 6 2.2102 -1.2134 0.0055 12 6 1.4539 -2.4887 0.0111 13 8 0.2438 -2.4769 0.1189 14 7 2.1088 -3.6610 -0.1036 15 6 1.4845 -4.9965 -0.1133 16 6 2.4931 -5.9031 -0.8620 17 1 2.3933 -5.7902 -1.9415 18 6 2.3270 -7.3667 -0.4483 19 6 3.8503 -5.3312 -0.3649 20 1 4.6373 -5.5151 -1.0963 21 7 4.2070 -5.9010 0.9367 22 6 5.5070 -5.8677 1.3657 23 1 6.2695 -5.4217 0.7442 24 6 5.8449 -6.4072 2.5992 25 7 4.9158 -6.9513 3.3564 26 14 7.6184 -6.3625 3.1841 27 1 8.4622 -5.7023 2.1558 28 1 7.7012 -5.6000 4.4557 29 1 8.1016 -7.7490 3.4061 30 6 3.5640 -3.8199 -0.2398 31 1 -0.3633 -0.1170 1.0209 32 1 -0.3633 0.9426 -0.4093 33 1 -0.3633 -0.8257 -0.6118 34 1 1.6676 2.1257 -0.0005 35 1 3.8801 3.2767 -0.0140 36 1 6.3127 3.1350 -0.0241 37 1 7.4461 0.9540 -0.0232 38 1 6.1707 -1.1180 -0.0102 39 1 1.3373 -5.3539 0.9059 40 1 0.5336 -4.9670 -0.6451 41 1 1.3245 -7.7063 -0.7085 42 1 3.0643 -7.9775 -0.9695 43 1 2.4741 -7.4590 0.6278 44 1 3.5223 -6.3019 1.4947 45 1 5.1520 -7.3286 4.2182 46 1 3.9115 -3.3014 -1.1334 47 1 4.0649 -3.4172 0.6406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054922157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:45 Heat of formation + Delta-G solvation = 30.552355 kcal Electronic energy + Delta-G solvation = -29652.331596 eV Core-core repulsion = 25799.888674 eV Total energy + Delta-G solvation = -3852.442922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22810 -40.90671 -39.26394 -37.88082 -35.87983 -35.14338 -33.83694 -32.65130 -32.23787 -31.28477 -29.36015 -28.22409 -27.61290 -26.02294 -25.63036 -23.56163 -23.48502 -23.00885 -21.10882 -20.72297 -19.48258 -18.96123 -18.63987 -17.62785 -17.24103 -16.97456 -16.52178 -16.21227 -15.88013 -15.57080 -15.44096 -15.20783 -15.14287 -14.68246 -14.47703 -14.33502 -14.18244 -13.97514 -13.81815 -13.55484 -13.43937 -13.18660 -12.95630 -12.87463 -12.79682 -12.61796 -12.56054 -12.47857 -12.33243 -12.07670 -11.97209 -11.46751 -11.41128 -11.37432 -11.03579 -11.00128 -10.37382 -9.86799 -9.54208 -9.21224 -8.99151 -7.92231 -5.19897 -0.83849 -0.35390 0.92542 1.35841 1.47301 1.47887 1.57492 1.88598 2.17147 2.57060 2.92127 3.06989 3.39432 3.43875 3.58898 3.67856 3.72645 3.83638 3.90478 3.95409 4.05857 4.10532 4.21213 4.35742 4.40109 4.43022 4.58138 4.62869 4.66273 4.72833 4.76318 4.83050 4.88495 4.92500 5.00649 5.02346 5.07284 5.08076 5.25134 5.25891 5.31807 5.38831 5.41192 5.46775 5.54656 5.56234 5.60060 5.87461 6.29487 6.42476 6.61910 7.01915 7.36742 8.10533 8.34564 9.31469 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.004264 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.243344 B = 6565.477531 C = 8851.245190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.104 4.104 3 C -0.059 4.059 4 C -0.094 4.094 5 C -0.101 4.101 6 C -0.101 4.101 7 C -0.096 4.096 8 C -0.111 4.111 9 C 0.088 3.912 10 N -0.452 5.452 11 C 0.089 3.911 12 C 0.567 3.433 13 O -0.557 6.557 14 N -0.590 5.590 15 C 0.114 3.886 16 C -0.098 4.098 17 H 0.109 0.891 18 C -0.125 4.125 19 C 0.158 3.842 20 H 0.077 0.923 21 N -0.721 5.721 22 C -0.231 4.231 23 H 0.079 0.921 24 C -0.073 4.073 25 N -0.970 5.970 26 Si 0.966 3.034 27 H -0.263 1.263 28 H -0.301 1.301 29 H -0.294 1.294 30 C 0.112 3.888 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.186 0.814 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.125 0.875 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.375 0.625 45 H 0.248 0.752 46 H 0.068 0.932 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 20.054 -11.855 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.107 4.107 3 C -0.084 4.084 4 C -0.096 4.096 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.130 4.130 9 C -0.036 4.036 10 N -0.163 5.163 11 C -0.063 4.063 12 C 0.356 3.644 13 O -0.437 6.437 14 N -0.321 5.321 15 C -0.008 4.008 16 C -0.118 4.118 17 H 0.127 0.873 18 C -0.183 4.183 19 C 0.047 3.953 20 H 0.095 0.905 21 N -0.361 5.361 22 C -0.363 4.363 23 H 0.096 0.904 24 C -0.265 4.265 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.187 1.187 28 H -0.228 1.228 29 H -0.222 1.222 30 C -0.014 4.014 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.203 0.797 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.174 0.826 38 H 0.143 0.857 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.210 0.790 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.985 19.328 -11.800 22.841 hybrid contribution 0.386 -0.051 1.211 1.272 sum -2.598 19.278 -10.589 22.147 Atomic orbital electron populations 1.20952 0.88054 1.03984 1.03219 1.20702 0.99161 0.91910 0.98938 1.21748 0.92161 0.98995 0.95519 1.19301 0.95009 0.94735 1.00556 1.21398 0.94401 0.97264 0.98908 1.21465 0.94856 0.98745 0.96781 1.21315 1.01849 0.91560 0.96896 1.21046 0.90877 1.00547 1.00507 1.19342 0.95058 0.88392 1.00820 1.68106 1.06730 1.31598 1.09854 1.21133 0.90036 0.93791 1.01386 1.17987 0.86249 0.82849 0.77355 1.90668 1.13507 1.86734 1.52765 1.48414 1.09539 1.05480 1.68626 1.22337 0.97307 0.81039 1.00153 1.22630 0.93470 0.95186 1.00507 0.87314 1.21487 1.01939 0.93762 1.01129 1.21607 0.95712 0.89800 0.88155 0.90532 1.42589 1.06598 1.69312 1.17610 1.19646 0.86647 1.29932 1.00101 0.90353 1.25460 1.01022 1.02181 0.97844 1.69820 1.33396 1.46389 1.12467 0.85171 0.80731 0.76750 0.77741 1.18709 1.22844 1.22167 1.22913 0.78565 0.98967 1.00917 0.91412 0.88981 0.90480 0.79706 0.81455 0.81567 0.82616 0.85666 0.93229 0.89518 0.90795 0.92081 0.94207 0.79045 0.94279 0.91403 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 8.68 71.24 0.62 -1.90 16 2 C -0.10 -2.85 5.89 -19.77 -0.12 -2.96 16 3 C -0.06 -1.22 9.50 22.48 0.21 -1.01 16 4 C -0.09 -2.15 5.75 -21.22 -0.12 -2.28 16 5 C -0.10 -1.51 9.77 22.31 0.22 -1.29 16 6 C -0.10 -1.35 9.96 22.07 0.22 -1.13 16 7 C -0.10 -1.71 9.94 22.04 0.22 -1.49 16 8 C -0.11 -2.89 9.99 22.38 0.22 -2.67 16 9 C 0.09 2.62 6.61 40.48 0.27 2.88 16 10 N -0.45 -15.94 6.79 -177.77 -1.21 -17.14 16 11 C 0.09 3.08 6.71 42.29 0.28 3.37 16 12 C 0.57 21.68 7.78 86.92 0.68 22.35 16 13 O -0.56 -21.96 13.48 -3.71 -0.05 -22.01 16 14 N -0.59 -22.39 3.33 -814.73 -2.71 -25.10 16 15 C 0.11 3.96 6.35 86.86 0.55 4.51 16 16 C -0.10 -3.13 3.52 -9.30 -0.03 -3.16 16 17 H 0.11 2.86 8.14 -2.39 -0.02 2.85 16 18 C -0.13 -3.96 8.99 71.98 0.65 -3.31 16 19 C 0.16 6.13 3.37 46.28 0.16 6.29 16 20 H 0.08 2.86 8.12 -2.39 -0.02 2.84 16 21 N -0.72 -35.44 4.60 -316.85 -1.46 -36.90 16 22 C -0.23 -12.57 9.98 84.03 0.84 -11.73 16 23 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 25 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 26 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 27 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 29 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 30 C 0.11 4.34 5.14 86.73 0.45 4.79 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.09 1.47 8.04 -2.39 -0.02 1.45 16 33 H 0.08 2.21 5.80 -2.39 -0.01 2.19 16 34 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 40 H 0.09 2.73 8.03 -2.39 -0.02 2.71 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.04 1.54 6.18 -2.39 -0.01 1.52 16 44 H 0.38 20.07 6.03 -92.71 -0.56 19.51 16 45 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 46 H 0.07 2.46 7.56 -2.39 -0.02 2.45 16 47 H 0.05 2.44 7.29 -2.39 -0.02 2.43 16 Total: -1.00 -72.94 379.63 3.09 -69.85 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.43 Total: 34.76 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.77 Total: 7.57 kcal Atomic # 7 Polarization: -133.28 SS G_CDS: -5.09 Total: -138.38 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.05 Total: -22.01 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -72.94 3.09 -69.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054922157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.406 kcal (2) G-P(sol) polarization free energy of solvation -72.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds