Wall clock time and date at job start Tue Mar 31 2020 22:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38761 * 119.84854 * 2 1 4 4 C 1.37759 * 120.63333 * 179.97438 * 3 2 1 5 5 C 1.39120 * 119.93380 * 0.02562 * 4 3 2 6 6 N 1.37963 * 133.18840 * 180.02562 * 5 4 3 7 7 H 0.96997 * 124.78739 * 359.97438 * 6 5 4 8 8 C 1.35472 * 110.42614 * 179.97438 * 6 5 4 9 9 C 1.36373 * 109.76924 * 359.97438 * 8 6 5 10 10 C 1.46916 * 126.76999 * 179.97438 * 9 8 6 11 11 O 1.21669 * 119.99990 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99781 * 0.03084 * 10 9 8 13 13 C 1.47386 * 135.85251 * 359.62330 * 12 10 9 14 14 C 1.52073 * 87.40733 * 154.39223 * 13 12 10 15 15 C 1.47389 * 135.85187 * 180.02562 * 12 10 9 16 16 C 1.53518 * 117.21725 * 267.27802 * 14 13 12 17 17 C 1.54628 * 102.70224 * 262.93191 * 16 14 13 18 18 N 1.47140 * 107.38146 * 339.38429 * 17 16 14 19 19 C 1.36939 * 125.58126 * 179.06954 * 18 17 16 20 20 H 1.08001 * 119.99459 * 180.02562 * 19 18 17 21 21 C 1.38812 * 119.99998 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99871 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99901 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47116 * 90.00654 * 23 21 19 25 25 H 1.48497 * 109.47151 * 210.00439 * 23 21 19 26 26 H 1.48502 * 109.47407 * 330.00383 * 23 21 19 27 27 C 1.47753 * 108.83861 * 359.08743 * 18 17 16 28 28 C 1.40394 * 119.36048 * 0.25581 * 5 4 3 29 29 C 1.37751 * 119.85345 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46960 * 90.00225 * 1 2 3 31 31 H 1.08998 * 109.47287 * 210.00014 * 1 2 3 32 32 H 1.08996 * 109.47406 * 330.00311 * 1 2 3 33 33 H 1.07998 * 119.67844 * 0.02562 * 3 2 1 34 34 H 1.08008 * 120.03138 * 179.97438 * 4 3 2 35 35 H 1.07992 * 125.11660 * 179.97438 * 8 6 5 36 36 H 1.08996 * 113.55013 * 269.00016 * 13 12 10 37 37 H 1.09002 * 113.54288 * 39.68969 * 13 12 10 38 38 H 1.09004 * 113.54365 * 320.31804 * 15 12 10 39 39 H 1.09004 * 113.54687 * 90.92130 * 15 12 10 40 40 H 1.09002 * 110.76039 * 21.23521 * 16 14 13 41 41 H 1.09000 * 110.76275 * 144.62500 * 16 14 13 42 42 H 1.09004 * 109.86395 * 98.83738 * 17 16 14 43 43 H 1.09000 * 109.86301 * 219.92981 * 17 16 14 44 44 H 0.96997 * 120.00167 * 179.97438 * 22 21 19 45 45 H 1.09010 * 110.40793 * 263.50685 * 27 18 17 46 46 H 1.09000 * 110.40946 * 141.08129 * 27 18 17 47 47 H 1.08009 * 120.16164 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1976 1.2035 0.0000 4 6 3.5750 1.2224 0.0005 5 6 4.2857 0.0264 0.0005 6 7 5.6328 -0.2715 0.0014 7 1 6.3451 0.3868 0.0019 8 6 5.8203 -1.6132 0.0015 9 6 4.6131 -2.2476 0.0013 10 6 4.3822 -3.6985 0.0008 11 8 3.2460 -4.1337 0.0001 12 7 5.4290 -4.5475 0.0011 13 6 6.8970 -4.4163 -0.0048 14 6 6.9527 -5.7838 0.6582 15 6 5.6037 -6.0110 0.0004 16 6 6.9952 -5.8190 2.1924 17 6 8.5055 -5.9709 2.4874 18 7 9.1393 -6.5043 1.2713 19 6 10.4749 -6.7646 1.1176 20 1 10.8443 -7.1565 0.1814 21 6 11.3539 -6.5246 2.1648 22 7 10.9035 -6.0474 3.3058 23 14 13.1758 -6.8790 1.9548 24 1 13.8586 -5.6681 1.4325 25 1 13.7623 -7.2505 3.2675 26 1 13.3550 -8.0000 0.9975 27 6 8.0989 -6.7127 0.2432 28 6 3.5854 -1.1904 -0.0055 29 6 2.1926 -1.1947 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6499 2.1343 0.0004 34 1 4.1027 2.1648 0.0001 35 1 6.7811 -2.1061 0.0018 36 1 7.3287 -4.3998 -1.0055 37 1 7.2645 -3.6086 0.6282 38 1 4.8912 -6.5349 0.6375 39 1 5.6722 -6.4408 -0.9990 40 1 6.6113 -4.8887 2.6110 41 1 6.4387 -6.6747 2.5748 42 1 8.9344 -4.9994 2.7331 43 1 8.6531 -6.6632 3.3162 44 1 11.5175 -5.8801 4.0377 45 1 7.7660 -7.7508 0.2441 46 1 8.4760 -6.4347 -0.7410 47 1 1.6528 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073466090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:08 Heat of formation + Delta-G solvation = 92.172370 kcal Electronic energy + Delta-G solvation = -28823.128423 eV Core-core repulsion = 24973.357546 eV Total energy + Delta-G solvation = -3849.770878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60990 -40.45990 -37.94991 -37.51380 -35.63462 -32.46449 -32.12075 -31.53948 -30.04817 -29.08908 -28.27335 -26.61747 -26.03550 -25.74716 -23.88295 -22.82576 -22.19446 -21.11629 -20.30496 -18.98130 -18.54769 -17.84316 -16.95214 -16.56454 -15.94863 -15.66138 -15.43949 -15.11309 -14.74234 -14.73731 -14.46286 -14.11296 -13.87028 -13.79935 -13.60451 -13.34123 -12.92583 -12.84494 -12.37086 -12.30329 -12.24343 -11.94477 -11.84697 -11.70689 -11.39187 -11.09803 -11.00852 -10.95507 -10.67258 -10.42635 -10.19571 -10.13565 -9.86194 -9.83277 -9.69582 -9.54360 -8.64074 -8.50991 -8.33466 -7.85993 -6.87895 -5.75491 -3.09202 0.86516 1.38084 1.95837 2.78602 3.01465 3.36252 3.41981 3.43423 3.43897 3.83286 4.42516 4.47211 4.55267 4.58899 4.68888 4.79973 4.95953 4.98497 5.13227 5.19476 5.28441 5.37037 5.45454 5.45939 5.49368 5.54403 5.60517 5.65624 5.66736 5.79902 5.83615 5.85121 5.95410 6.02615 6.17981 6.19812 6.23021 6.40928 6.44280 6.51188 6.53889 6.58760 6.64982 6.69311 6.94790 7.19405 7.51853 7.58251 7.78528 7.93387 8.20684 8.42408 9.17444 9.77499 10.43177 11.35990 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.002447 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.973424 B =11438.283363 C =12263.734324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.112 4.112 3 C -0.100 4.100 4 C -0.124 4.124 5 C 0.080 3.920 6 N -0.580 5.580 7 H 0.420 0.580 8 C 0.109 3.891 9 C -0.222 4.222 10 C 0.616 3.384 11 O -0.551 6.551 12 N -0.642 5.642 13 C 0.114 3.886 14 C -0.104 4.104 15 C 0.122 3.878 16 C -0.117 4.117 17 C 0.180 3.820 18 N -0.605 5.605 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.153 3.847 28 C -0.058 4.058 29 C -0.063 4.063 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.184 0.816 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.252 0.748 45 H 0.027 0.973 46 H 0.042 0.958 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.479 13.764 -7.427 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.113 4.113 3 C -0.119 4.119 4 C -0.145 4.145 5 C -0.025 4.025 6 N -0.181 5.181 7 H 0.258 0.742 8 C -0.024 4.024 9 C -0.232 4.232 10 C 0.409 3.591 11 O -0.430 6.430 12 N -0.377 5.377 13 C -0.009 4.009 14 C -0.105 4.105 15 C -0.001 4.001 16 C -0.155 4.155 17 C 0.055 3.945 18 N -0.332 5.332 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.026 3.974 28 C -0.063 4.063 29 C -0.082 4.082 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.201 0.799 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.988 13.774 -7.283 21.620 hybrid contribution 1.616 0.194 -0.048 1.628 sum -13.373 13.969 -7.332 20.681 Atomic orbital electron populations 1.20711 0.91073 1.02611 1.02103 1.19713 0.96074 0.92594 1.02919 1.20674 0.92810 0.97569 1.00887 1.19972 0.93814 0.94613 1.06055 1.18259 0.83096 0.95367 1.05806 1.41582 1.06290 1.06958 1.63245 0.74242 1.22605 0.99728 0.82512 0.97519 1.19963 0.92056 0.92176 1.19037 1.16668 0.82970 0.83863 0.75635 1.90744 1.21542 1.78462 1.52244 1.49613 1.06457 1.08321 1.73267 1.22998 0.78767 0.98515 1.00603 1.22178 0.94995 0.95729 0.97639 1.22739 0.95663 0.81048 1.00613 1.22470 1.00609 1.00892 0.91566 1.21220 0.85106 0.98877 0.89292 1.44550 1.02695 1.76057 1.09864 1.19044 0.81269 1.36704 0.98547 0.90397 1.24796 0.98145 1.01463 0.96054 1.69960 1.33150 1.50348 1.03474 0.86132 0.84997 0.77854 0.76844 1.21678 1.21721 1.20692 1.21152 0.87764 0.95262 0.93207 1.18722 0.92988 0.90556 1.03986 1.20557 0.91761 0.98147 0.97714 0.91465 0.91532 0.91791 0.85714 0.86096 0.79909 0.89404 0.90319 0.90398 0.89828 0.92063 0.91729 0.93603 0.93813 0.93756 0.95498 0.93931 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.00 36.00 0.36 -0.53 16 2 C -0.11 -1.22 5.88 -104.61 -0.62 -1.84 16 3 C -0.10 -0.96 9.66 -39.56 -0.38 -1.34 16 4 C -0.12 -1.21 10.07 -39.43 -0.40 -1.61 16 5 C 0.08 0.93 7.26 -83.97 -0.61 0.32 16 6 N -0.58 -5.60 5.99 -10.49 -0.06 -5.66 16 7 H 0.42 2.58 8.96 -40.82 -0.37 2.21 16 8 C 0.11 1.24 11.03 -16.62 -0.18 1.05 16 9 C -0.22 -3.24 6.27 -103.31 -0.65 -3.89 16 10 C 0.62 10.30 8.05 -12.75 -0.10 10.20 16 11 O -0.55 -10.83 16.93 5.22 0.09 -10.74 16 12 N -0.64 -9.58 3.70 -187.22 -0.69 -10.28 16 13 C 0.11 1.56 6.40 -7.34 -0.05 1.51 16 14 C -0.10 -1.63 1.06 -155.21 -0.16 -1.80 16 15 C 0.12 1.74 8.03 -7.47 -0.06 1.68 16 16 C -0.12 -2.08 6.41 -25.61 -0.16 -2.24 16 17 C 0.18 4.10 5.39 -2.84 -0.02 4.09 16 18 N -0.60 -14.36 3.41 -170.53 -0.58 -14.94 16 19 C -0.23 -5.99 10.28 -15.06 -0.15 -6.15 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.12 10.30 55.49 0.57 -25.55 16 23 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 C 0.15 2.83 6.70 -3.22 -0.02 2.81 16 28 C -0.06 -0.83 6.27 -104.95 -0.66 -1.49 16 29 C -0.06 -0.86 9.49 -39.37 -0.37 -1.23 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.18 1.74 5.07 -52.49 -0.27 1.48 16 36 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 37 H 0.08 1.04 6.25 -51.93 -0.32 0.71 16 38 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.04 8.07 -51.93 -0.42 0.63 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.15 7.39 -51.93 -0.38 0.77 16 43 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 46 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 47 H 0.13 1.91 7.45 -52.48 -0.39 1.52 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -33.38 380.80 -11.01 -44.39 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.72 Total: 1.49 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -4.33 Total: -0.77 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.76 Total: -56.43 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.38 -11.01 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073466090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.566 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds