Wall clock time and date at job start Tue Mar 31 2020 22:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38948 * 119.67686 * 2 1 4 4 C 1.36437 * 120.61518 * 179.97438 * 3 2 1 5 5 C 1.40097 * 119.83020 * 359.79389 * 4 3 2 6 6 C 1.41595 * 133.37491 * 179.61051 * 5 4 3 7 7 C 1.35864 * 107.72616 * 180.38435 * 6 5 4 8 8 C 1.47063 * 125.42706 * 180.25077 * 7 6 5 9 9 O 1.21643 * 119.99962 * 352.97560 * 8 7 6 10 10 N 1.34779 * 119.99626 * 172.97239 * 8 7 6 11 11 C 1.47399 * 125.58741 * 183.22830 * 10 8 7 12 12 C 1.54850 * 104.81132 * 204.60807 * 11 10 8 13 13 C 1.55127 * 101.77790 * 322.81653 * 12 11 10 14 14 H 1.08997 * 113.45845 * 159.24237 * 13 12 11 15 15 C 1.54043 * 108.25825 * 286.08703 * 13 12 11 16 16 N 1.46710 * 106.82375 * 135.80468 * 15 13 12 17 17 C 1.36935 * 125.31566 * 161.84144 * 16 15 13 18 18 H 1.07999 * 120.00867 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99687 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99812 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00028 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46974 * 120.00119 * 21 19 17 24 24 H 1.48498 * 109.46941 * 239.99739 * 21 19 17 25 25 C 1.46631 * 109.35531 * 341.82412 * 16 15 13 26 26 C 1.46735 * 125.58956 * 2.92350 * 10 8 7 27 27 H 1.09001 * 111.32739 * 56.12824 * 26 10 8 28 28 N 1.38150 * 109.13974 * 0.22996 * 7 6 5 29 29 H 0.96995 * 125.60301 * 179.97438 * 28 7 6 30 30 C 1.37478 * 108.78977 * 359.97438 * 28 7 6 31 31 C 1.37672 * 119.67654 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46972 * 270.02077 * 1 2 3 33 33 H 1.09003 * 109.47612 * 30.01681 * 1 2 3 34 34 H 1.09004 * 109.47549 * 150.01921 * 1 2 3 35 35 H 1.08000 * 119.68728 * 0.02562 * 3 2 1 36 36 H 1.08001 * 120.08325 * 180.02562 * 4 3 2 37 37 H 1.08002 * 126.12953 * 0.64864 * 6 5 4 38 38 H 1.09000 * 110.37000 * 323.44643 * 11 10 8 39 39 H 1.09005 * 110.36832 * 85.77692 * 11 10 8 40 40 H 1.09000 * 110.96792 * 80.94160 * 12 11 10 41 41 H 1.08998 * 110.96701 * 204.65597 * 12 11 10 42 42 H 1.08993 * 109.98810 * 255.14947 * 15 13 12 43 43 H 1.09000 * 109.98658 * 16.47140 * 15 13 12 44 44 H 0.97003 * 119.99620 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.75579 * 120.93029 * 25 16 15 46 46 H 1.09000 * 109.75037 * 241.62367 * 25 16 15 47 47 H 1.08003 * 120.09512 * 359.96962 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1948 1.2072 0.0000 4 6 3.5590 1.2296 0.0005 5 6 4.2757 0.0258 0.0054 6 6 5.6575 -0.2833 0.0002 7 6 5.7787 -1.6365 0.0008 8 6 7.0484 -2.3787 0.0016 9 8 8.1011 -1.7830 -0.1270 10 7 7.0454 -3.7188 0.1449 11 6 8.2421 -4.5750 0.2304 12 6 7.7659 -5.9696 -0.2451 13 6 6.3351 -6.0357 0.3507 14 1 5.6911 -6.7608 -0.1467 15 6 6.4548 -6.2632 1.8696 16 7 5.4993 -5.3538 2.5117 17 6 5.0331 -5.4718 3.7938 18 1 5.3705 -6.2857 4.4184 19 6 4.1268 -4.5453 4.2908 20 7 3.7152 -3.5537 3.5295 21 14 3.4913 -4.7059 6.0401 22 1 4.1031 -5.8973 6.6815 23 1 3.8508 -3.4887 6.8110 24 1 2.0145 -4.8595 6.0181 25 6 5.1219 -4.2986 1.5660 26 6 5.8503 -4.5640 0.2477 27 1 5.1904 -4.4233 -0.6084 28 7 4.5192 -2.2041 0.0009 29 1 4.3284 -3.1551 0.0009 30 6 3.5808 -1.1994 0.0010 31 6 2.1885 -1.1961 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5141 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6445 2.1365 0.0004 36 1 4.0850 2.1728 0.0009 37 1 6.4694 0.4290 0.0005 38 1 9.0263 -4.1976 -0.4260 39 1 8.5992 -4.6263 1.2590 40 1 7.7381 -6.0222 -1.3334 41 1 8.3968 -6.7580 0.1654 42 1 6.2067 -7.2964 2.1122 43 1 7.4675 -6.0347 2.2018 44 1 3.0821 -2.9060 3.8770 45 1 4.0441 -4.3172 1.4041 46 1 5.4183 -3.3268 1.9609 47 1 1.6448 -2.1293 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076099132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:50 Heat of formation + Delta-G solvation = 70.981771 kcal Electronic energy + Delta-G solvation = -30591.309923 eV Core-core repulsion = 26740.620153 eV Total energy + Delta-G solvation = -3850.689771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46849 -40.03720 -38.04258 -36.91792 -34.80855 -32.79030 -32.11290 -31.34246 -30.33144 -29.35336 -28.63145 -27.00779 -26.07229 -24.86102 -23.68327 -22.22634 -21.09114 -20.91462 -20.43990 -19.95088 -19.14088 -17.36795 -17.15767 -16.52473 -15.79806 -15.43000 -15.25793 -14.87798 -14.62477 -14.29527 -14.00594 -13.86742 -13.57857 -13.41854 -13.35017 -13.08368 -12.94105 -12.71095 -12.47341 -12.39437 -12.07526 -11.97817 -11.64796 -11.44942 -11.22413 -11.18132 -10.91905 -10.84935 -10.69618 -10.63235 -10.47304 -10.33433 -10.05471 -9.86083 -9.81931 -9.45552 -8.76047 -8.44250 -7.82798 -7.36834 -6.99140 -5.84000 -3.18692 1.08722 1.95354 2.40615 3.08690 3.33307 3.39097 3.41967 3.43368 3.69009 4.17888 4.37769 4.54972 4.56924 4.94872 4.97056 5.01821 5.09400 5.20071 5.34107 5.36541 5.41575 5.47959 5.51935 5.66503 5.67190 5.69159 5.73964 5.76081 5.85995 5.88528 5.93708 5.96639 6.06052 6.10705 6.17940 6.24228 6.34091 6.39634 6.47983 6.67111 6.76171 6.83436 6.95965 7.01463 7.05153 7.30671 7.41732 7.61551 7.72458 7.80678 8.09712 8.34125 9.07398 9.68541 10.29693 11.27292 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008367 B = 0.005508 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.752842 B = 5082.621232 C = 7401.922655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.066 4.066 3 C -0.152 4.152 4 C -0.062 4.062 5 C -0.124 4.124 6 C -0.118 4.118 7 C 0.030 3.970 8 C 0.603 3.397 9 O -0.537 6.537 10 N -0.600 5.600 11 C 0.110 3.890 12 C -0.125 4.125 13 C -0.105 4.105 14 H 0.102 0.898 15 C 0.140 3.860 16 N -0.597 5.597 17 C -0.236 4.236 18 H 0.081 0.919 19 C -0.003 4.003 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.162 3.838 26 C 0.086 3.914 27 H 0.075 0.925 28 N -0.563 5.563 29 H 0.424 0.576 30 C 0.128 3.872 31 C -0.121 4.121 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.150 0.850 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.023 0.977 44 H 0.254 0.746 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 1.851 -11.084 11.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.068 4.068 3 C -0.171 4.171 4 C -0.081 4.081 5 C -0.128 4.128 6 C -0.146 4.146 7 C -0.081 4.081 8 C 0.392 3.608 9 O -0.414 6.414 10 N -0.333 5.333 11 C -0.012 4.012 12 C -0.163 4.163 13 C -0.125 4.125 14 H 0.120 0.880 15 C 0.014 3.986 16 N -0.324 5.324 17 C -0.363 4.363 18 H 0.098 0.902 19 C -0.200 4.200 20 N -0.563 5.563 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.036 3.964 26 C -0.019 4.019 27 H 0.093 0.907 28 N -0.172 5.172 29 H 0.271 0.729 30 C 0.016 3.984 31 C -0.142 4.142 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.167 0.833 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.499 2.140 -11.009 11.226 hybrid contribution -0.531 -0.557 1.173 1.403 sum -1.029 1.583 -9.835 10.015 Atomic orbital electron populations 1.20745 0.91338 1.02271 1.02267 1.19500 0.95508 0.92269 0.99488 1.20394 0.93874 0.97054 1.05798 1.20272 0.93593 0.96001 0.98226 1.18141 0.92928 0.92924 1.08853 1.20731 0.95290 0.92904 1.05626 1.19929 0.84217 0.93089 1.10846 1.16814 0.87374 0.80103 0.76474 1.90787 1.31448 1.67739 1.51458 1.48259 1.08342 1.05230 1.71493 1.22235 0.88015 0.89193 1.01799 1.22796 0.96406 0.96519 1.00603 1.23120 0.96200 0.94608 0.98549 0.87992 1.21369 0.93802 0.94678 0.88801 1.44102 1.49833 1.27229 1.11227 1.19062 1.20532 1.09645 0.87101 0.90154 1.24805 0.99481 0.97234 0.98494 1.69875 1.35637 1.15692 1.35121 0.86033 0.78370 0.77340 0.83914 1.20505 1.21684 1.21683 1.21517 0.96231 0.94053 0.84578 1.22875 0.87613 0.91317 1.00076 0.90703 1.42891 1.03747 1.09127 1.61433 0.72932 1.18256 0.90834 0.87764 1.01541 1.19890 0.90007 0.98239 1.06020 0.91220 0.91792 0.91796 0.86454 0.86235 0.83269 0.90413 0.90884 0.90888 0.89537 0.94225 0.95916 0.93524 0.92912 0.92066 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.99 36.00 0.36 -0.82 16 2 C -0.07 -0.93 5.88 -104.57 -0.61 -1.54 16 3 C -0.15 -2.06 9.61 -39.97 -0.38 -2.44 16 4 C -0.06 -0.91 10.06 -39.53 -0.40 -1.31 16 5 C -0.12 -2.15 6.16 -106.93 -0.66 -2.81 16 6 C -0.12 -2.13 10.54 -39.15 -0.41 -2.54 16 7 C 0.03 0.57 6.09 -82.29 -0.50 0.07 16 8 C 0.60 11.84 7.51 -12.68 -0.10 11.74 16 9 O -0.54 -11.44 17.07 5.24 0.09 -11.35 16 10 N -0.60 -10.67 2.99 -164.11 -0.49 -11.16 16 11 C 0.11 1.67 6.45 -2.58 -0.02 1.65 16 12 C -0.12 -1.52 6.35 -24.63 -0.16 -1.68 16 13 C -0.11 -1.57 4.35 -87.73 -0.38 -1.95 16 14 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 15 C 0.14 2.62 6.45 -3.38 -0.02 2.60 16 16 N -0.60 -14.26 3.38 -172.36 -0.58 -14.84 16 17 C -0.24 -6.28 10.25 -15.06 -0.15 -6.43 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C 0.00 -0.09 5.48 -17.43 -0.10 -0.18 16 20 N -0.92 -25.63 10.24 55.49 0.57 -25.06 16 21 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.16 3.59 3.19 -4.00 -0.01 3.58 16 26 C 0.09 1.48 2.77 -66.61 -0.18 1.30 16 27 H 0.08 1.16 6.67 -51.93 -0.35 0.81 16 28 N -0.56 -10.28 4.78 -7.35 -0.04 -10.32 16 29 H 0.42 7.56 3.55 -40.82 -0.14 7.41 16 30 C 0.13 2.29 7.25 -83.98 -0.61 1.68 16 31 C -0.12 -1.95 9.71 -39.42 -0.38 -2.33 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.15 2.44 8.06 -52.49 -0.42 2.02 16 38 H 0.08 1.11 7.99 -51.93 -0.42 0.70 16 39 H 0.07 1.20 7.18 -51.93 -0.37 0.82 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.02 0.44 6.52 -51.93 -0.34 0.10 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.05 1.27 6.57 -51.93 -0.34 0.93 16 46 H 0.06 1.59 5.97 -51.93 -0.31 1.28 16 47 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -31.60 367.05 -11.12 -42.72 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.46 Total: 9.20 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -4.72 Total: -1.44 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.54 Total: -61.38 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.60 -11.12 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076099132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.698 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds