Wall clock time and date at job start Tue Mar 31 2020 22:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38948 * 119.67686 * 2 1 4 4 C 1.36437 * 120.61518 * 179.97438 * 3 2 1 5 5 C 1.40097 * 119.83020 * 359.79389 * 4 3 2 6 6 C 1.41595 * 133.37491 * 179.61051 * 5 4 3 7 7 C 1.35864 * 107.72616 * 180.38435 * 6 5 4 8 8 C 1.47063 * 125.42706 * 180.25077 * 7 6 5 9 9 O 1.21643 * 119.99962 * 352.97560 * 8 7 6 10 10 N 1.34779 * 119.99626 * 172.97239 * 8 7 6 11 11 C 1.47399 * 125.58741 * 183.22830 * 10 8 7 12 12 C 1.54850 * 104.81132 * 204.60807 * 11 10 8 13 13 C 1.55127 * 101.77790 * 322.81653 * 12 11 10 14 14 H 1.08997 * 113.45845 * 159.24237 * 13 12 11 15 15 C 1.54043 * 108.25825 * 286.08703 * 13 12 11 16 16 N 1.46710 * 106.82375 * 135.80468 * 15 13 12 17 17 C 1.36935 * 125.31566 * 161.84144 * 16 15 13 18 18 H 1.07999 * 120.00867 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99687 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99812 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00028 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46974 * 120.00119 * 21 19 17 24 24 H 1.48498 * 109.46941 * 239.99739 * 21 19 17 25 25 C 1.46631 * 109.35531 * 341.82412 * 16 15 13 26 26 C 1.46735 * 125.58956 * 2.92350 * 10 8 7 27 27 H 1.09001 * 111.32739 * 56.12824 * 26 10 8 28 28 N 1.38150 * 109.13974 * 0.22996 * 7 6 5 29 29 H 0.96995 * 125.60301 * 179.97438 * 28 7 6 30 30 C 1.37478 * 108.78977 * 359.97438 * 28 7 6 31 31 C 1.37672 * 119.67654 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46972 * 270.02077 * 1 2 3 33 33 H 1.09003 * 109.47612 * 30.01681 * 1 2 3 34 34 H 1.09004 * 109.47549 * 150.01921 * 1 2 3 35 35 H 1.08000 * 119.68728 * 0.02562 * 3 2 1 36 36 H 1.08001 * 120.08325 * 180.02562 * 4 3 2 37 37 H 1.08002 * 126.12953 * 0.64864 * 6 5 4 38 38 H 1.09000 * 110.37000 * 323.44643 * 11 10 8 39 39 H 1.09005 * 110.36832 * 85.77692 * 11 10 8 40 40 H 1.09000 * 110.96792 * 80.94160 * 12 11 10 41 41 H 1.08998 * 110.96701 * 204.65597 * 12 11 10 42 42 H 1.08993 * 109.98810 * 255.14947 * 15 13 12 43 43 H 1.09000 * 109.98658 * 16.47140 * 15 13 12 44 44 H 0.97003 * 119.99620 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.75579 * 120.93029 * 25 16 15 46 46 H 1.09000 * 109.75037 * 241.62367 * 25 16 15 47 47 H 1.08003 * 120.09512 * 359.96962 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1948 1.2072 0.0000 4 6 3.5590 1.2296 0.0005 5 6 4.2757 0.0258 0.0054 6 6 5.6575 -0.2833 0.0002 7 6 5.7787 -1.6365 0.0008 8 6 7.0484 -2.3787 0.0016 9 8 8.1011 -1.7830 -0.1270 10 7 7.0454 -3.7188 0.1449 11 6 8.2421 -4.5750 0.2304 12 6 7.7659 -5.9696 -0.2451 13 6 6.3351 -6.0357 0.3507 14 1 5.6911 -6.7608 -0.1467 15 6 6.4548 -6.2632 1.8696 16 7 5.4993 -5.3538 2.5117 17 6 5.0331 -5.4718 3.7938 18 1 5.3705 -6.2857 4.4184 19 6 4.1268 -4.5453 4.2908 20 7 3.7152 -3.5537 3.5295 21 14 3.4913 -4.7059 6.0401 22 1 4.1031 -5.8973 6.6815 23 1 3.8508 -3.4887 6.8110 24 1 2.0145 -4.8595 6.0181 25 6 5.1219 -4.2986 1.5660 26 6 5.8503 -4.5640 0.2477 27 1 5.1904 -4.4233 -0.6084 28 7 4.5192 -2.2041 0.0009 29 1 4.3284 -3.1551 0.0009 30 6 3.5808 -1.1994 0.0010 31 6 2.1885 -1.1961 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5141 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6445 2.1365 0.0004 36 1 4.0850 2.1728 0.0009 37 1 6.4694 0.4290 0.0005 38 1 9.0263 -4.1976 -0.4260 39 1 8.5992 -4.6263 1.2590 40 1 7.7381 -6.0222 -1.3334 41 1 8.3968 -6.7580 0.1654 42 1 6.2067 -7.2964 2.1122 43 1 7.4675 -6.0347 2.2018 44 1 3.0821 -2.9060 3.8770 45 1 4.0441 -4.3172 1.4041 46 1 5.4183 -3.3268 1.9609 47 1 1.6448 -2.1293 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076099132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:49 Heat of formation + Delta-G solvation = 53.365919 kcal Electronic energy + Delta-G solvation = -30592.073804 eV Core-core repulsion = 26740.620153 eV Total energy + Delta-G solvation = -3851.453652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.81747 -41.39185 -39.53913 -38.13959 -36.50878 -34.15563 -33.64281 -32.83767 -31.54209 -30.87254 -30.02215 -28.41841 -27.34540 -26.64787 -24.93429 -23.51581 -22.72967 -22.21276 -21.75115 -21.25854 -20.58321 -18.96028 -18.70545 -17.96308 -17.15178 -16.89248 -16.74251 -16.40033 -16.07104 -15.72742 -15.42256 -15.30673 -14.85891 -14.75971 -14.64102 -14.45124 -14.24210 -14.09542 -13.99959 -13.69493 -13.50749 -13.06001 -13.00181 -12.89192 -12.85810 -12.56069 -12.51383 -12.15811 -12.10048 -11.98612 -11.91572 -11.79497 -11.74020 -11.51680 -11.32752 -10.78675 -10.75142 -9.89457 -9.09209 -8.92980 -8.65038 -7.88855 -5.24260 -0.21633 0.74450 1.04764 1.41003 1.42751 1.51816 1.70866 2.08608 2.24762 2.44443 2.96324 3.22726 3.26444 3.32243 3.56484 3.69035 3.75774 3.86796 4.04118 4.08782 4.18067 4.22976 4.35668 4.37872 4.43125 4.45350 4.51554 4.61600 4.71630 4.74184 4.84455 4.87476 4.90327 4.97069 5.02044 5.04365 5.08601 5.18620 5.26418 5.30070 5.31640 5.43520 5.57974 5.59881 5.62379 5.73642 5.78808 6.13175 6.20095 6.27156 6.44905 6.86121 7.05090 7.73461 8.33633 9.18941 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008367 B = 0.005508 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.752842 B = 5082.621232 C = 7401.922655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.058 4.058 3 C -0.150 4.150 4 C -0.066 4.066 5 C -0.147 4.147 6 C -0.123 4.123 7 C 0.002 3.998 8 C 0.596 3.404 9 O -0.564 6.564 10 N -0.600 5.600 11 C 0.099 3.901 12 C -0.104 4.104 13 C -0.092 4.092 14 H 0.133 0.867 15 C 0.131 3.869 16 N -0.621 5.621 17 C -0.244 4.244 18 H 0.083 0.917 19 C -0.059 4.059 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.266 1.266 23 H -0.301 1.301 24 H -0.290 1.290 25 C 0.182 3.818 26 C 0.091 3.909 27 H 0.096 0.904 28 N -0.565 5.565 29 H 0.421 0.579 30 C 0.107 3.893 31 C -0.149 4.149 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.050 0.950 43 H 0.022 0.978 44 H 0.243 0.757 45 H 0.026 0.974 46 H 0.016 0.984 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 1.281 -12.243 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.060 4.060 3 C -0.168 4.168 4 C -0.084 4.084 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.108 4.108 8 C 0.387 3.613 9 O -0.444 6.444 10 N -0.332 5.332 11 C -0.022 4.022 12 C -0.142 4.142 13 C -0.111 4.111 14 H 0.151 0.849 15 C 0.007 3.993 16 N -0.347 5.347 17 C -0.372 4.372 18 H 0.101 0.899 19 C -0.253 4.253 20 N -0.584 5.584 21 Si 0.800 3.200 22 H -0.190 1.190 23 H -0.229 1.229 24 H -0.217 1.217 25 C 0.056 3.944 26 C -0.013 4.013 27 H 0.113 0.887 28 N -0.174 5.174 29 H 0.267 0.733 30 C -0.005 4.005 31 C -0.169 4.169 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.176 0.824 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.132 0.868 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.044 0.956 46 H 0.034 0.966 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.143 1.517 -12.180 12.327 hybrid contribution -0.375 -0.325 1.584 1.660 sum -1.518 1.192 -10.596 10.770 Atomic orbital electron populations 1.20831 0.88737 1.03999 1.02952 1.20005 0.97436 0.91707 0.96828 1.20853 0.93611 0.98285 1.04073 1.20664 0.94369 0.96050 0.97331 1.18436 0.92667 0.93957 1.10042 1.20979 0.96147 0.92893 1.04976 1.20017 0.84428 0.93661 1.12737 1.16996 0.87278 0.80798 0.76276 1.90744 1.32218 1.68370 1.53083 1.48342 1.09421 1.04959 1.70446 1.22477 0.87585 0.90863 1.01271 1.22808 0.94239 0.94863 1.02259 1.23180 0.98707 0.93065 0.96160 0.84886 1.21612 0.92402 0.94114 0.91203 1.44432 1.50612 1.28668 1.11021 1.19392 1.19954 1.09265 0.88636 0.89900 1.25548 1.00449 0.97473 1.01791 1.70113 1.36007 1.16166 1.36098 0.85120 0.77634 0.77075 0.80150 1.19017 1.22866 1.21711 1.21099 0.95168 0.91693 0.86467 1.22773 0.87593 0.93001 0.97979 0.88660 1.42812 1.03686 1.09047 1.61847 0.73280 1.18684 0.91678 0.88031 1.02071 1.20128 0.89495 0.99439 1.07887 0.90840 0.89154 0.91091 0.82792 0.83626 0.82444 0.89424 0.92661 0.87962 0.86800 0.93145 0.96000 0.94718 0.95634 0.96638 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 9.99 71.23 0.71 -1.38 16 2 C -0.06 -1.56 5.88 -19.83 -0.12 -1.68 16 3 C -0.15 -3.72 9.61 22.02 0.21 -3.51 16 4 C -0.07 -1.86 10.06 22.30 0.22 -1.63 16 5 C -0.15 -5.23 6.16 -21.36 -0.13 -5.36 16 6 C -0.12 -4.62 10.54 22.55 0.24 -4.38 16 7 C 0.00 0.07 6.09 39.91 0.24 0.32 16 8 C 0.60 24.34 7.51 86.56 0.65 24.99 16 9 O -0.56 -24.92 17.07 -4.17 -0.07 -24.99 16 10 N -0.60 -21.49 2.99 -791.37 -2.37 -23.85 16 11 C 0.10 2.91 6.45 86.84 0.56 3.47 16 12 C -0.10 -2.15 6.35 31.95 0.20 -1.95 16 13 C -0.09 -2.51 4.35 -8.92 -0.04 -2.55 16 14 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 15 C 0.13 4.77 6.45 86.69 0.56 5.33 16 16 N -0.62 -30.08 3.38 -699.22 -2.36 -32.44 16 17 C -0.24 -13.20 10.25 84.03 0.86 -12.34 16 18 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 19 C -0.06 -3.26 5.48 84.86 0.47 -2.80 16 20 N -0.94 -54.60 10.24 21.65 0.22 -54.37 16 21 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 C 0.18 8.36 3.19 86.34 0.28 8.64 16 26 C 0.09 3.12 2.77 45.72 0.13 3.25 16 27 H 0.10 2.90 6.67 -2.39 -0.02 2.89 16 28 N -0.57 -21.84 4.78 -177.18 -0.85 -22.68 16 29 H 0.42 15.91 3.55 -92.71 -0.33 15.59 16 30 C 0.11 4.00 7.25 39.14 0.28 4.28 16 31 C -0.15 -4.90 9.71 22.37 0.22 -4.69 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 34 H 0.07 1.27 8.08 -2.38 -0.02 1.26 16 35 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.16 5.41 8.06 -2.91 -0.02 5.39 16 38 H 0.09 2.40 7.99 -2.39 -0.02 2.38 16 39 H 0.06 1.81 7.18 -2.38 -0.02 1.79 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.11 1.84 8.08 -2.39 -0.02 1.82 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.02 0.81 6.52 -2.39 -0.02 0.80 16 44 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.03 1.31 6.57 -2.39 -0.02 1.29 16 46 H 0.02 0.86 5.97 -2.39 -0.01 0.84 16 47 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -72.88 367.05 2.82 -70.07 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.67 Total: 32.58 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.54 Total: 8.02 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -5.35 Total: -133.35 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.07 Total: -24.99 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -72.88 2.82 -70.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076099132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.432 kcal (2) G-P(sol) polarization free energy of solvation -72.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds