Wall clock time and date at job start Tue Mar 31 2020 22:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38753 * 119.84584 * 2 1 4 4 C 1.37767 * 120.63535 * 179.97438 * 3 2 1 5 5 C 1.39130 * 119.92786 * 0.02562 * 4 3 2 6 6 N 1.37959 * 133.18731 * 180.02562 * 5 4 3 7 7 H 0.97003 * 124.78456 * 359.96719 * 6 5 4 8 8 C 1.35470 * 110.42634 * 180.02562 * 6 5 4 9 9 C 1.36375 * 109.76789 * 0.02562 * 8 6 5 10 10 C 1.46911 * 126.76901 * 179.97438 * 9 8 6 11 11 O 1.21668 * 120.00501 * 203.83643 * 10 9 8 12 12 N 1.34776 * 119.99626 * 23.83762 * 10 9 8 13 13 C 1.47351 * 125.53440 * 355.66219 * 12 10 9 14 14 C 1.54938 * 104.89752 * 156.51968 * 13 12 10 15 15 C 1.54803 * 101.49459 * 37.23907 * 14 13 12 16 16 H 1.08997 * 112.64457 * 85.34297 * 15 14 13 17 17 C 1.53267 * 110.30743 * 212.07215 * 15 14 13 18 18 N 1.46587 * 108.15934 * 95.99864 * 17 15 14 19 19 C 1.36940 * 125.30691 * 177.92733 * 18 17 15 20 20 H 1.08001 * 119.99634 * 348.44351 * 19 18 17 21 21 C 1.38806 * 119.99887 * 168.45277 * 19 18 17 22 22 N 1.31614 * 120.00251 * 2.23042 * 21 19 18 23 23 Si 1.86805 * 119.99753 * 182.23441 * 21 19 18 24 24 H 1.48501 * 109.47265 * 84.98744 * 23 21 19 25 25 H 1.48506 * 109.47041 * 204.98264 * 23 21 19 26 26 H 1.48493 * 109.47158 * 324.98135 * 23 21 19 27 27 C 1.48222 * 109.52537 * 357.69729 * 18 17 15 28 28 C 1.47218 * 125.52788 * 175.63990 * 12 10 9 29 29 H 1.08994 * 112.28682 * 56.26547 * 28 12 10 30 30 C 1.40392 * 119.35884 * 0.30846 * 5 4 3 31 31 C 1.37754 * 119.84990 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47062 * 90.00663 * 1 2 3 33 33 H 1.09006 * 109.46659 * 210.00125 * 1 2 3 34 34 H 1.08999 * 109.47375 * 330.00135 * 1 2 3 35 35 H 1.07999 * 119.68374 * 359.97438 * 3 2 1 36 36 H 1.07995 * 120.03670 * 180.02562 * 4 3 2 37 37 H 1.07996 * 125.11577 * 179.97438 * 8 6 5 38 38 H 1.08993 * 110.35591 * 275.38073 * 13 12 10 39 39 H 1.09005 * 110.35207 * 37.67030 * 13 12 10 40 40 H 1.08991 * 111.01908 * 155.28907 * 14 13 12 41 41 H 1.09000 * 111.02294 * 279.18574 * 14 13 12 42 42 H 1.09003 * 109.73854 * 215.68362 * 17 15 14 43 43 H 1.08996 * 109.73823 * 336.33445 * 17 15 14 44 44 H 0.97006 * 120.00321 * 179.97438 * 22 21 19 45 45 H 1.09003 * 110.72844 * 258.71171 * 27 18 17 46 46 H 1.09002 * 109.88402 * 136.91238 * 27 18 17 47 47 H 1.07997 * 120.16782 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.2035 0.0000 4 6 3.5751 1.2225 0.0005 5 6 4.2858 0.0264 0.0005 6 7 5.6328 -0.2715 0.0014 7 1 6.3452 0.3869 0.0018 8 6 5.8203 -1.6132 0.0004 9 6 4.6131 -2.2476 -0.0018 10 6 4.3822 -3.6984 -0.0040 11 8 3.3352 -4.1472 -0.4315 12 7 5.3301 -4.5324 0.4677 13 6 6.6713 -4.1315 0.9281 14 6 7.1166 -5.2618 1.8897 15 6 6.5371 -6.5124 1.1852 16 1 7.2025 -6.9080 0.4180 17 6 6.1387 -7.5697 2.2209 18 7 4.7058 -7.4247 2.4939 19 6 3.9765 -8.2194 3.3375 20 1 4.4021 -9.1360 3.7185 21 6 2.6902 -7.8471 3.7028 22 7 2.1551 -6.7529 3.2040 23 14 1.7185 -8.8988 4.9025 24 1 2.0713 -8.5172 6.2936 25 1 0.2653 -8.6848 4.6840 26 1 2.0464 -10.3305 4.6837 27 6 4.1673 -6.2809 1.7201 28 6 5.1935 -5.9915 0.6069 29 1 4.9311 -6.4739 -0.3346 30 6 3.5854 -1.1904 -0.0066 31 6 2.1927 -1.1948 -0.0005 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3634 0.8900 0.5138 35 1 1.6499 2.1343 -0.0004 36 1 4.1027 2.1648 0.0009 37 1 6.7812 -2.1061 0.0004 38 1 7.3565 -4.0604 0.0835 39 1 6.6215 -3.1804 1.4582 40 1 8.2033 -5.3165 1.9520 41 1 6.6761 -5.1304 2.8781 42 1 6.3393 -8.5657 1.8261 43 1 6.7054 -7.4170 3.1394 44 1 1.2560 -6.4929 3.4589 45 1 4.0531 -5.4038 2.3571 46 1 3.2076 -6.5506 1.2793 47 1 1.6530 -2.1302 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076614524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:17 Heat of formation + Delta-G solvation = 37.905555 kcal Electronic energy + Delta-G solvation = -29692.272123 eV Core-core repulsion = 25840.148060 eV Total energy + Delta-G solvation = -3852.124063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.48484 -41.20551 -39.04082 -38.34798 -36.57412 -34.17640 -33.10326 -32.36719 -32.19253 -30.85444 -29.59093 -28.30543 -27.37785 -26.45676 -24.79237 -23.80187 -22.63585 -22.38824 -21.92657 -20.74040 -20.00751 -18.92589 -18.79007 -17.74188 -17.27509 -16.87964 -16.43540 -16.42397 -15.90210 -15.84190 -15.35401 -15.16901 -14.99960 -14.89440 -14.62914 -14.41124 -14.22547 -14.04372 -13.78736 -13.68605 -13.27347 -13.20947 -13.02041 -12.91377 -12.78671 -12.61930 -12.49577 -12.18163 -12.16053 -11.90906 -11.87649 -11.67242 -11.47433 -11.45012 -10.93916 -10.74380 -10.69351 -9.59350 -9.14748 -8.89567 -8.71423 -7.87244 -5.28443 0.02144 0.54128 1.06371 1.39849 1.44128 1.52639 1.90747 2.14100 2.41968 2.46755 2.90365 3.29998 3.42033 3.61358 3.67593 3.76208 3.86732 3.91638 4.03360 4.05602 4.28909 4.32507 4.37182 4.37355 4.44991 4.52063 4.53036 4.64674 4.68748 4.74667 4.80330 4.85346 4.87777 4.96906 5.07930 5.13007 5.18161 5.20186 5.27828 5.39406 5.43853 5.50703 5.52434 5.57733 5.63318 5.75483 5.78085 6.12812 6.16777 6.61105 6.69137 7.02043 7.33351 7.74008 8.38788 9.21374 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.003653 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.205163 B = 7664.138875 C = 9533.236077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.104 4.104 4 C -0.109 4.109 5 C 0.074 3.926 6 N -0.555 5.555 7 H 0.444 0.556 8 C 0.143 3.857 9 C -0.272 4.272 10 C 0.588 3.412 11 O -0.600 6.600 12 N -0.607 5.607 13 C 0.088 3.912 14 C -0.114 4.114 15 C -0.089 4.089 16 H 0.134 0.866 17 C 0.137 3.863 18 N -0.627 5.627 19 C -0.246 4.246 20 H 0.089 0.911 21 C -0.070 4.070 22 N -0.952 5.952 23 Si 0.982 3.018 24 H -0.280 1.280 25 H -0.300 1.300 26 H -0.262 1.262 27 C 0.202 3.798 28 C 0.118 3.882 29 H 0.066 0.934 30 C -0.094 4.094 31 C -0.111 4.111 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.229 0.771 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.047 0.953 42 H 0.033 0.967 43 H 0.036 0.964 44 H 0.242 0.758 45 H -0.012 1.012 46 H 0.005 0.995 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.196 20.040 -7.826 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.123 4.123 4 C -0.129 4.129 5 C -0.032 4.032 6 N -0.159 5.159 7 H 0.286 0.714 8 C 0.008 3.992 9 C -0.283 4.283 10 C 0.380 3.620 11 O -0.482 6.482 12 N -0.340 5.340 13 C -0.033 4.033 14 C -0.152 4.152 15 C -0.108 4.108 16 H 0.152 0.848 17 C 0.013 3.987 18 N -0.354 5.354 19 C -0.375 4.375 20 H 0.106 0.894 21 C -0.263 4.263 22 N -0.600 5.600 23 Si 0.809 3.191 24 H -0.206 1.206 25 H -0.227 1.227 26 H -0.187 1.187 27 C 0.076 3.924 28 C 0.013 3.987 29 H 0.084 0.916 30 C -0.099 4.099 31 C -0.130 4.130 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.180 0.820 36 H 0.183 0.817 37 H 0.245 0.755 38 H 0.136 0.864 39 H 0.111 0.889 40 H 0.151 0.849 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.006 0.994 46 H 0.024 0.976 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.535 19.951 -7.986 25.944 hybrid contribution -1.519 -1.040 0.740 1.984 sum 13.016 18.911 -7.246 24.074 Atomic orbital electron populations 1.20782 0.89993 1.03029 1.02844 1.20022 0.97210 0.92451 1.01418 1.21088 0.93527 0.97603 1.00087 1.20459 0.93701 0.95383 1.03320 1.18361 0.84112 0.94508 1.06174 1.41441 1.05736 1.06813 1.61864 0.71367 1.22883 0.98950 0.82698 0.94635 1.19925 0.94699 0.90636 1.22998 1.17535 0.81985 0.85884 0.76551 1.90756 1.28520 1.78863 1.50076 1.48420 1.15962 1.06485 1.63109 1.22993 0.81987 0.99370 0.98917 1.22821 1.03146 0.91990 0.97208 1.22912 0.94161 0.95985 0.97776 0.84809 1.21263 0.84099 0.96976 0.96409 1.44862 1.05059 1.34360 1.51155 1.19491 0.96605 1.01750 1.19672 0.89350 1.25867 0.99329 0.98937 1.02168 1.70304 1.15164 1.26893 1.47679 0.85056 0.76866 0.78539 0.78653 1.20607 1.22664 1.18686 1.21104 0.93546 0.88344 0.89395 1.22606 0.98011 0.80803 0.97330 0.91562 1.19074 0.93199 0.92726 1.04870 1.20491 0.92980 0.97804 1.01767 0.90458 0.93454 0.89019 0.82026 0.81690 0.75507 0.86416 0.88888 0.84881 0.93423 0.94912 0.94579 0.94865 0.99406 0.97620 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 10.00 71.24 0.71 -1.84 16 2 C -0.11 -3.09 5.88 -19.86 -0.12 -3.20 16 3 C -0.10 -2.11 9.66 22.28 0.22 -1.89 16 4 C -0.11 -1.97 10.07 22.37 0.23 -1.74 16 5 C 0.07 1.72 7.26 38.92 0.28 2.00 16 6 N -0.56 -8.30 5.99 -187.08 -1.12 -9.42 16 7 H 0.44 2.14 8.96 -92.71 -0.83 1.31 16 8 C 0.14 2.71 9.93 83.70 0.83 3.54 16 9 C -0.27 -9.10 6.03 -19.01 -0.11 -9.22 16 10 C 0.59 25.30 7.59 86.51 0.66 25.96 16 11 O -0.60 -33.07 16.88 -4.25 -0.07 -33.14 16 12 N -0.61 -22.21 2.85 -788.19 -2.25 -24.46 16 13 C 0.09 1.89 5.22 86.88 0.45 2.34 16 14 C -0.11 -2.69 6.27 31.87 0.20 -2.49 16 15 C -0.09 -2.75 3.87 -9.31 -0.04 -2.79 16 16 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 17 C 0.14 5.53 6.68 86.45 0.58 6.11 16 18 N -0.63 -34.60 3.41 -694.62 -2.37 -36.97 16 19 C -0.25 -14.71 10.22 84.03 0.86 -13.85 16 20 H 0.09 4.92 7.83 -2.91 -0.02 4.90 16 21 C -0.07 -4.34 5.48 84.86 0.47 -3.87 16 22 N -0.95 -64.49 10.38 21.65 0.22 -64.26 16 23 Si 0.98 49.07 29.55 68.60 2.03 51.10 16 24 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 25 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 26 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 27 C 0.20 11.51 4.71 86.43 0.41 11.92 16 28 C 0.12 4.97 3.82 46.02 0.18 5.14 16 29 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 30 C -0.09 -3.25 6.29 -20.08 -0.13 -3.38 16 31 C -0.11 -4.17 9.63 22.41 0.22 -3.95 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.27 8.08 -2.38 -0.02 1.25 16 34 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.23 2.03 5.51 -2.91 -0.02 2.02 16 38 H 0.12 1.39 7.74 -2.39 -0.02 1.37 16 39 H 0.09 1.68 6.06 -2.38 -0.01 1.66 16 40 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.05 1.49 7.92 -2.39 -0.02 1.47 16 42 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.04 1.39 7.77 -2.39 -0.02 1.38 16 44 H 0.24 16.14 8.31 -92.70 -0.77 15.37 16 45 H -0.01 -0.78 7.71 -2.39 -0.02 -0.80 16 46 H 0.01 0.37 6.99 -2.39 -0.02 0.35 16 47 H 0.08 3.79 7.81 -2.91 -0.02 3.77 16 Total: -1.00 -100.09 374.61 2.49 -97.60 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.17 Total: 10.77 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 5.88 Total: 8.79 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -5.52 Total: -135.11 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.07 Total: -33.14 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.10 kcal Total: -100.09 2.49 -97.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076614524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.507 kcal (2) G-P(sol) polarization free energy of solvation -100.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds