Wall clock time and date at job start Tue Mar 31 2020 22:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36612 * 120.92764 * 2 1 4 4 C 1.39271 * 119.90722 * 179.97438 * 3 2 1 5 5 N 1.31149 * 121.77037 * 0.27433 * 4 3 2 6 6 C 1.33617 * 121.39415 * 359.43250 * 5 4 3 7 7 C 1.40764 * 120.84104 * 180.23942 * 6 5 4 8 8 C 1.35694 * 120.11587 * 180.29786 * 7 6 5 9 9 C 1.40639 * 120.92547 * 0.02562 * 8 7 6 10 10 C 1.47761 * 119.80372 * 179.97438 * 9 8 7 11 11 O 1.21565 * 120.00139 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00074 * 0.02638 * 10 9 8 13 13 C 1.46499 * 120.00312 * 179.97438 * 12 10 9 14 14 H 1.09009 * 110.63875 * 36.68751 * 13 12 10 15 15 C 1.54319 * 110.72363 * 273.54517 * 13 12 10 16 16 N 1.47016 * 107.27132 * 219.44393 * 15 13 12 17 17 C 1.36944 * 125.64784 * 178.97643 * 16 15 13 18 18 H 1.07999 * 120.00002 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99701 * 359.97223 * 17 16 15 20 20 N 1.31615 * 120.00391 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99757 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47242 * 59.99951 * 21 19 17 23 23 H 1.48502 * 109.47256 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46998 * 299.99615 * 21 19 17 25 25 C 1.47422 * 108.70670 * 358.93659 * 16 15 13 26 26 C 1.54910 * 104.83092 * 24.12997 * 25 16 15 27 27 H 1.08998 * 111.00329 * 81.06144 * 26 25 16 28 28 C 1.52999 * 111.00712 * 204.91467 * 26 25 16 29 29 C 1.38551 * 120.39290 * 0.02562 * 9 8 7 30 30 C 1.40181 * 119.40079 * 359.97438 * 29 9 8 31 31 H 1.09005 * 109.46945 * 90.00195 * 1 2 3 32 32 H 1.08994 * 109.47495 * 210.00731 * 1 2 3 33 33 H 1.09001 * 109.47158 * 330.01388 * 1 2 3 34 34 H 1.07999 * 120.04206 * 359.94473 * 3 2 1 35 35 H 1.08002 * 119.11046 * 179.97438 * 4 3 2 36 36 H 1.08004 * 119.93769 * 0.27805 * 7 6 5 37 37 H 1.07993 * 119.53864 * 180.02562 * 8 7 6 38 38 H 0.97005 * 119.99783 * 359.97438 * 12 10 9 39 39 H 1.09007 * 109.87948 * 338.85717 * 15 13 12 40 40 H 1.09000 * 109.88223 * 99.86823 * 15 13 12 41 41 H 0.97001 * 120.00305 * 180.02562 * 20 19 17 42 42 H 1.09005 * 110.36810 * 142.96473 * 25 16 15 43 43 H 1.08996 * 110.37088 * 265.18328 * 25 16 15 44 44 H 1.09002 * 109.47265 * 172.19266 * 28 26 25 45 45 H 1.08996 * 109.47291 * 292.19925 * 28 26 25 46 46 H 1.09005 * 109.46789 * 52.19653 * 28 26 25 47 47 H 1.08001 * 120.29822 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1719 0.0000 4 6 3.6016 1.1471 0.0005 5 7 4.2722 0.0200 -0.0043 6 6 3.6479 -1.1614 0.0013 7 6 4.3793 -2.3641 0.0011 8 6 3.7302 -3.5557 0.0008 9 6 2.3249 -3.6132 0.0001 10 6 1.6436 -4.9244 -0.0009 11 8 0.4292 -4.9783 -0.0019 12 7 2.3686 -6.0606 -0.0005 13 6 1.6932 -7.3605 -0.0009 14 1 0.7904 -7.3243 -0.6108 15 6 1.3615 -7.8040 1.4395 16 7 1.6113 -9.2506 1.5193 17 6 1.4565 -10.0268 2.6369 18 1 1.6665 -11.0852 2.5925 19 6 1.0297 -9.4531 3.8266 20 7 0.7744 -8.1631 3.8809 21 14 0.8192 -10.5117 5.3513 22 1 2.1187 -11.1393 5.7014 23 1 0.3569 -9.6662 6.4811 24 1 -0.1860 -11.5714 5.0832 25 6 2.0552 -9.7274 0.1968 26 6 2.6505 -8.4765 -0.4964 27 1 3.6713 -8.2928 -0.1611 28 6 2.5920 -8.6133 -2.0191 29 6 1.5756 -2.4478 -0.0008 30 6 2.2307 -1.2085 -0.0004 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8898 0.5139 33 1 -0.3633 0.8901 0.5136 34 1 1.6850 2.1162 -0.0009 35 1 4.1438 2.0812 0.0001 36 1 5.4590 -2.3383 0.0009 37 1 4.3005 -4.4727 0.0010 38 1 3.3377 -6.0175 0.0000 39 1 2.0028 -7.2775 2.1464 40 1 0.3151 -7.5934 1.6606 41 1 0.4765 -7.7621 4.7124 42 1 2.8176 -10.4985 0.3078 43 1 1.2083 -10.1113 -0.3719 44 1 2.8860 -7.6704 -2.4802 45 1 3.2724 -9.4022 -2.3395 46 1 1.5756 -8.8647 -2.3225 47 1 0.4966 -2.4938 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079765543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:10 Heat of formation + Delta-G solvation = 42.017114 kcal Electronic energy + Delta-G solvation = -28722.049104 eV Core-core repulsion = 24870.103332 eV Total energy + Delta-G solvation = -3851.945773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.18196 -39.62856 -37.73256 -36.65768 -34.94771 -33.96318 -32.68638 -30.92641 -30.54131 -30.36950 -28.30932 -27.64055 -25.66146 -24.80023 -23.82600 -23.39695 -21.38449 -21.03277 -20.06937 -19.85379 -18.23926 -17.87836 -16.91583 -16.76777 -16.01942 -15.76493 -15.05298 -14.88417 -14.50585 -14.31033 -14.28477 -14.21436 -13.74539 -13.71784 -13.34579 -13.20848 -13.04169 -12.80735 -12.76713 -12.64070 -12.06770 -11.90949 -11.72353 -11.71259 -11.58468 -11.34052 -11.01863 -10.75776 -10.62060 -10.43178 -10.40919 -9.98121 -9.93625 -9.75414 -9.71911 -9.60546 -9.03400 -8.61797 -8.53619 -8.35182 -6.82406 -5.67461 -3.03014 0.04888 0.47608 1.71138 2.34749 3.35188 3.42072 3.44758 3.46465 3.48159 3.95703 4.02398 4.25059 4.35121 4.51214 4.52408 4.70608 4.82389 4.91011 4.95678 5.10423 5.11587 5.22619 5.25405 5.30596 5.42600 5.43970 5.55965 5.66893 5.71108 5.74845 5.78637 5.84274 5.97389 5.97674 6.06705 6.14230 6.14841 6.21234 6.29161 6.34615 6.48544 6.55409 6.62514 6.74808 6.92559 7.56270 7.59142 7.65932 7.84454 7.88518 8.27116 8.50815 9.23049 9.83863 10.48603 11.42963 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.002684 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.768159 B =10431.003767 C =11298.071610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.010 4.010 3 C -0.189 4.189 4 C 0.141 3.859 5 N -0.483 5.483 6 C 0.145 3.855 7 C -0.100 4.100 8 C -0.072 4.072 9 C -0.124 4.124 10 C 0.555 3.445 11 O -0.532 6.532 12 N -0.705 5.705 13 C 0.121 3.879 14 H 0.088 0.912 15 C 0.173 3.827 16 N -0.606 5.606 17 C -0.232 4.232 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.141 3.859 26 C -0.114 4.114 27 H 0.077 0.923 28 C -0.138 4.138 29 C -0.030 4.030 30 C -0.112 4.112 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.159 0.841 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.395 0.605 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.253 0.747 42 H 0.042 0.958 43 H 0.022 0.978 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 17.367 -12.121 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.018 4.018 3 C -0.209 4.209 4 C -0.031 4.031 5 N -0.192 5.192 6 C 0.023 3.977 7 C -0.119 4.119 8 C -0.092 4.092 9 C -0.128 4.128 10 C 0.342 3.658 11 O -0.410 6.410 12 N -0.356 5.356 13 C 0.016 3.984 14 H 0.106 0.894 15 C 0.048 3.952 16 N -0.333 5.333 17 C -0.360 4.360 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.014 3.986 26 C -0.134 4.134 27 H 0.096 0.904 28 C -0.196 4.196 29 C -0.049 4.049 30 C -0.114 4.114 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.158 0.842 37 H 0.152 0.848 38 H 0.230 0.770 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.701 17.216 -11.887 21.684 hybrid contribution -0.470 -0.411 0.986 1.167 sum 5.231 16.805 -10.901 20.703 Atomic orbital electron populations 1.20963 0.89688 1.04149 1.03487 1.20273 0.96863 0.91997 0.92701 1.21746 0.95610 0.98762 1.04771 1.22969 0.91528 0.96446 0.92187 1.68057 1.39912 0.97716 1.13475 1.18978 0.89564 0.92552 0.96597 1.20652 1.00521 0.89749 1.00939 1.20998 0.93152 0.98456 0.96607 1.20081 0.93723 0.94028 1.04928 1.18076 0.87087 0.83741 0.76922 1.90787 1.13294 1.87317 1.49605 1.45850 1.09734 1.05800 1.74174 1.22536 0.95102 0.79990 1.00769 0.89388 1.21472 1.00607 0.84242 0.88905 1.44403 1.78896 1.04429 1.05548 1.18995 1.39195 0.91113 0.86686 0.90380 1.24830 1.01522 0.96109 0.97923 1.69960 1.51320 1.09310 1.25934 0.86204 0.77853 0.79088 0.82615 1.21197 1.21621 1.21152 1.21585 0.96018 0.93632 0.87316 1.22617 0.99061 0.96844 0.94838 0.90420 1.21706 1.01854 1.01000 0.94995 1.21486 1.00894 0.89648 0.92921 1.18687 0.94105 0.93989 1.04647 0.89854 0.90116 0.90442 0.84454 0.82353 0.84170 0.84783 0.77010 0.93148 0.93346 0.93683 0.93969 0.96012 0.93089 0.92730 0.92548 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 9.59 36.01 0.35 -0.61 16 2 C -0.01 -0.10 5.92 -104.22 -0.62 -0.72 16 3 C -0.19 -1.55 9.72 -39.78 -0.39 -1.93 16 4 C 0.14 1.27 11.14 -17.46 -0.19 1.07 16 5 N -0.48 -5.76 10.33 -10.92 -0.11 -5.87 16 6 C 0.14 1.83 6.61 -84.78 -0.56 1.27 16 7 C -0.10 -1.15 9.95 -39.54 -0.39 -1.54 16 8 C -0.07 -0.83 9.44 -39.59 -0.37 -1.21 16 9 C -0.12 -1.76 5.87 -104.98 -0.62 -2.37 16 10 C 0.56 9.56 7.76 -12.37 -0.10 9.47 16 11 O -0.53 -11.15 16.03 5.31 0.09 -11.06 16 12 N -0.71 -11.37 5.08 -53.00 -0.27 -11.64 16 13 C 0.12 2.29 2.70 -66.10 -0.18 2.11 16 14 H 0.09 1.77 7.59 -51.92 -0.39 1.38 16 15 C 0.17 4.32 5.12 -3.07 -0.02 4.30 16 16 N -0.61 -15.55 3.39 -170.08 -0.58 -16.13 16 17 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -27.65 10.31 55.49 0.57 -27.08 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 25 C 0.14 2.85 6.70 -2.53 -0.02 2.83 16 26 C -0.11 -1.87 3.25 -88.47 -0.29 -2.15 16 27 H 0.08 1.21 8.00 -51.93 -0.42 0.80 16 28 C -0.14 -1.79 9.31 37.16 0.35 -1.45 16 29 C -0.03 -0.40 8.88 -38.74 -0.34 -0.74 16 30 C -0.11 -1.38 5.74 -106.82 -0.61 -1.99 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.68 6.52 -51.93 -0.34 0.34 16 33 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.13 1.23 6.35 -52.49 -0.33 0.90 16 38 H 0.39 5.13 6.50 -40.82 -0.27 4.87 16 39 H 0.05 1.38 7.27 -51.92 -0.38 1.01 16 40 H 0.05 1.41 7.50 -51.93 -0.39 1.02 16 41 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.02 0.44 7.99 -51.93 -0.41 0.03 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 47 H 0.15 1.91 6.00 -52.49 -0.31 1.60 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -35.00 382.28 -10.41 -45.41 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.59 Total: 3.87 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -4.25 Total: -0.63 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.39 Total: -60.72 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.00 -10.41 -45.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079765543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.425 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds