Wall clock time and date at job start Tue Mar 31 2020 22:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30815 * 119.23387 * 2 1 4 4 C 1.33791 * 121.71946 * 180.28800 * 3 2 1 5 5 C 1.40532 * 120.81636 * 179.70121 * 4 3 2 6 6 C 1.36129 * 119.81679 * 180.02562 * 5 4 3 7 7 C 1.39344 * 121.08827 * 359.95160 * 6 5 4 8 8 C 1.36136 * 120.84140 * 0.04831 * 7 6 5 9 9 C 1.40549 * 119.62140 * 359.97438 * 8 7 6 10 10 C 1.40494 * 121.23890 * 179.97438 * 9 8 7 11 11 C 1.39047 * 117.96321 * 180.02562 * 10 9 8 12 12 C 1.47759 * 120.26388 * 180.02562 * 11 10 9 13 13 O 1.21562 * 119.99907 * 173.69683 * 12 11 10 14 14 N 1.34773 * 120.00445 * 353.69330 * 12 11 10 15 15 C 1.46493 * 120.00285 * 180.02562 * 14 12 11 16 16 H 1.09006 * 110.77949 * 31.76612 * 15 14 12 17 17 C 1.54324 * 110.72176 * 268.52464 * 15 14 12 18 18 N 1.47021 * 107.27189 * 219.44596 * 17 15 14 19 19 C 1.36932 * 125.65160 * 178.98753 * 18 17 15 20 20 H 1.08001 * 120.00663 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99776 * 359.97184 * 19 18 17 22 22 N 1.31621 * 120.00105 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00101 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47177 * 59.99895 * 23 21 19 25 25 H 1.48498 * 109.47315 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46927 * 300.00012 * 23 21 19 27 27 C 1.47429 * 108.70297 * 358.93773 * 18 17 15 28 28 C 1.54909 * 104.83359 * 24.12987 * 27 18 17 29 29 H 1.09004 * 111.00271 * 81.06049 * 28 27 18 30 30 C 1.52999 * 111.03923 * 204.90125 * 28 27 18 31 31 H 1.09004 * 109.47064 * 263.57377 * 1 2 3 32 32 H 1.08996 * 109.46738 * 23.57215 * 1 2 3 33 33 H 1.08999 * 109.46979 * 143.57630 * 1 2 3 34 34 H 1.08005 * 120.09164 * 0.02562 * 5 4 3 35 35 H 1.08001 * 119.45369 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.57782 * 180.02562 * 7 6 5 37 37 H 1.07998 * 120.18933 * 179.97438 * 8 7 6 38 38 H 1.08004 * 121.01743 * 0.04185 * 10 9 8 39 39 H 0.97005 * 119.99536 * 0.02562 * 14 12 11 40 40 H 1.09002 * 109.88123 * 338.85737 * 17 15 14 41 41 H 1.08996 * 109.88467 * 99.87199 * 17 15 14 42 42 H 0.96992 * 120.00149 * 179.97438 * 22 21 19 43 43 H 1.09005 * 110.36833 * 265.29218 * 27 18 17 44 44 H 1.09001 * 110.36589 * 142.97174 * 27 18 17 45 45 H 1.08999 * 109.47192 * 175.39239 * 30 28 27 46 46 H 1.08994 * 109.47004 * 295.39513 * 30 28 27 47 47 H 1.09004 * 109.46780 * 55.39318 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1415 0.0000 4 6 3.4825 1.1996 -0.0057 5 6 4.1494 2.4366 -0.0119 6 6 5.5102 2.4719 -0.0182 7 6 6.2605 1.2976 -0.0176 8 6 5.6513 0.0802 -0.0117 9 6 4.2478 0.0057 -0.0056 10 6 3.5839 -1.2324 0.0001 11 6 2.1934 -1.2266 0.0054 12 6 1.4434 -2.4998 0.0120 13 8 0.2338 -2.4920 0.1323 14 7 2.1004 -3.6696 -0.1153 15 6 1.3568 -4.9318 -0.1092 16 1 0.3661 -4.7990 -0.5443 17 6 1.2529 -5.4975 1.3228 18 7 1.4238 -6.9548 1.2299 19 6 1.4174 -7.8280 2.2846 20 1 1.5513 -8.8856 2.1111 21 6 1.2387 -7.3540 3.5770 22 7 1.0760 -6.0651 3.7887 23 14 1.2306 -8.5450 5.0160 24 1 2.5303 -9.2613 5.0730 25 1 1.0233 -7.7932 6.2797 26 1 0.1313 -9.5276 4.8391 27 6 1.6020 -7.3205 -0.1872 28 6 2.1438 -6.0362 -0.8631 29 1 3.2165 -5.9318 -0.7002 30 6 1.8149 -6.0213 -2.3572 31 1 -0.3633 -0.1150 1.0212 32 1 -0.3633 0.9419 -0.4110 33 1 -0.3633 -0.8269 -0.6102 34 1 3.5839 3.3567 -0.0117 35 1 6.0167 3.4257 -0.0233 36 1 7.3390 1.3541 -0.0223 37 1 6.2431 -0.8232 -0.0117 38 1 4.1366 -2.1603 0.0005 39 1 3.0657 -3.6758 -0.2109 40 1 2.0380 -5.0714 1.9475 41 1 0.2756 -5.2627 1.7442 42 1 0.9508 -5.7339 4.6916 43 1 0.6471 -7.6072 -0.6280 44 1 2.3233 -8.1322 -0.2817 45 1 2.1341 -5.0732 -2.7901 46 1 2.3363 -6.8405 -2.8522 47 1 0.7400 -6.1394 -2.4938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079794870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:21 Heat of formation + Delta-G solvation = 47.154743 kcal Electronic energy + Delta-G solvation = -29032.907789 eV Core-core repulsion = 25181.184801 eV Total energy + Delta-G solvation = -3851.722988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18331 -39.54801 -37.84923 -36.95966 -34.35935 -33.57358 -32.60577 -31.90607 -30.45537 -30.37902 -28.13853 -27.48081 -25.67600 -24.87818 -23.55525 -22.73746 -22.26215 -21.11168 -20.10800 -19.82464 -18.41162 -17.57600 -16.88470 -16.87675 -15.80944 -15.76270 -15.21296 -14.91946 -14.73699 -14.67066 -14.08210 -13.94473 -13.73049 -13.59949 -13.22908 -13.02570 -12.92746 -12.80132 -12.76033 -12.11746 -11.98692 -11.94343 -11.72154 -11.66334 -11.45976 -11.37156 -11.04030 -10.77743 -10.73775 -10.58779 -10.44437 -10.05142 -9.97905 -9.86685 -9.71738 -9.31883 -8.92008 -8.63240 -8.49867 -8.46236 -6.85327 -5.70365 -3.05742 0.03256 0.48994 1.66369 2.47397 3.26975 3.33361 3.40523 3.44782 3.46528 3.93344 4.04864 4.31222 4.43701 4.49888 4.51939 4.55964 4.85722 4.91448 4.99467 5.09081 5.23507 5.28077 5.39596 5.44868 5.53390 5.54527 5.67512 5.72292 5.73067 5.86565 5.93039 5.94938 5.96272 6.07867 6.11399 6.14636 6.15747 6.20255 6.30895 6.41037 6.45593 6.59735 6.62616 6.72950 6.89362 7.50701 7.55653 7.74594 7.81620 7.84336 8.24049 8.43923 9.20362 9.81093 10.45690 11.40190 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.002862 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.364067 B = 9779.692137 C =10189.639094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.215 3.785 3 N -0.485 5.485 4 C 0.149 3.851 5 C -0.101 4.101 6 C -0.093 4.093 7 C -0.127 4.127 8 C -0.084 4.084 9 C -0.119 4.119 10 C -0.015 4.015 11 C -0.177 4.177 12 C 0.560 3.440 13 O -0.523 6.523 14 N -0.705 5.705 15 C 0.120 3.880 16 H 0.092 0.908 17 C 0.173 3.827 18 N -0.606 5.606 19 C -0.232 4.232 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.141 3.859 28 C -0.114 4.114 29 H 0.076 0.924 30 C -0.137 4.137 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.393 0.607 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.253 0.747 43 H 0.023 0.977 44 H 0.042 0.958 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.582 14.459 -12.197 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.062 3.938 3 N -0.194 5.194 4 C 0.027 3.973 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.145 4.145 8 C -0.102 4.102 9 C -0.121 4.121 10 C -0.042 4.042 11 C -0.183 4.183 12 C 0.346 3.654 13 O -0.400 6.400 14 N -0.355 5.355 15 C 0.016 3.984 16 H 0.110 0.890 17 C 0.047 3.953 18 N -0.332 5.332 19 C -0.360 4.360 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.014 3.986 28 C -0.134 4.134 29 H 0.094 0.906 30 C -0.195 4.195 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.162 0.838 39 H 0.228 0.772 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.278 15.299 -11.855 21.051 hybrid contribution 1.154 -1.368 0.950 2.026 sum 9.432 13.931 -10.905 20.049 Atomic orbital electron populations 1.21130 0.87170 1.03788 1.04752 1.21628 0.97762 0.86176 0.88244 1.67913 1.08133 1.28186 1.15171 1.19017 0.89251 0.92990 0.96059 1.20811 0.94200 0.96395 1.00600 1.20958 0.93694 0.98790 0.97839 1.20907 1.00392 0.92287 1.00924 1.21064 0.92479 0.98752 0.97954 1.18769 0.94955 0.93631 1.04747 1.22019 0.93325 0.97685 0.91167 1.20935 0.94035 0.95666 1.07643 1.17848 0.87278 0.83104 0.77131 1.90745 1.13429 1.86776 1.49067 1.45845 1.10411 1.05864 1.73353 1.22566 0.95126 0.80892 0.99854 0.88956 1.21474 1.01503 0.83330 0.88957 1.44390 1.85560 1.02883 1.00400 1.18995 1.43270 0.89054 0.84667 0.90374 1.24827 1.01959 0.96192 0.97386 1.69951 1.55323 1.11233 1.20085 0.86202 0.77830 0.79769 0.81948 1.21202 1.21610 1.21129 1.21587 0.97152 0.93827 0.85998 1.22627 0.99697 0.96858 0.94234 0.90550 1.21697 1.01679 1.00955 0.95180 0.89489 0.91394 0.87581 0.84635 0.85258 0.85408 0.84952 0.83766 0.77215 0.93203 0.93304 0.93663 0.95968 0.93958 0.93167 0.92736 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 8.82 36.01 0.32 -1.22 16 2 C 0.21 3.17 6.82 -82.15 -0.56 2.61 16 3 N -0.48 -7.04 10.20 -6.93 -0.07 -7.11 16 4 C 0.15 1.93 6.61 -84.79 -0.56 1.37 16 5 C -0.10 -1.04 9.97 -39.48 -0.39 -1.44 16 6 C -0.09 -0.74 9.94 -39.93 -0.40 -1.14 16 7 C -0.13 -0.99 9.96 -39.93 -0.40 -1.39 16 8 C -0.08 -0.76 9.77 -39.47 -0.39 -1.14 16 9 C -0.12 -1.40 5.74 -106.81 -0.61 -2.02 16 10 C -0.02 -0.19 9.38 -38.43 -0.36 -0.55 16 11 C -0.18 -2.56 5.89 -104.83 -0.62 -3.18 16 12 C 0.56 9.29 7.69 -12.37 -0.10 9.19 16 13 O -0.52 -10.14 12.96 5.31 0.07 -10.08 16 14 N -0.70 -10.96 5.05 -53.00 -0.27 -11.23 16 15 C 0.12 2.21 2.78 -66.10 -0.18 2.03 16 16 H 0.09 1.80 7.45 -51.93 -0.39 1.41 16 17 C 0.17 4.20 5.12 -3.06 -0.02 4.18 16 18 N -0.61 -15.24 3.39 -170.07 -0.58 -15.82 16 19 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -27.28 10.31 55.49 0.57 -26.71 16 23 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.14 2.79 6.70 -2.53 -0.02 2.77 16 28 C -0.11 -1.83 3.27 -88.47 -0.29 -2.12 16 29 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 30 C -0.14 -1.75 9.29 37.16 0.35 -1.41 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.11 1.57 5.82 -51.93 -0.30 1.26 16 34 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.14 1.32 6.53 -52.48 -0.34 0.98 16 39 H 0.39 4.96 6.67 -40.82 -0.27 4.69 16 40 H 0.05 1.33 7.27 -51.93 -0.38 0.96 16 41 H 0.05 1.38 7.50 -51.93 -0.39 0.99 16 42 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.02 0.44 8.03 -51.93 -0.42 0.03 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -33.45 380.80 -10.71 -44.16 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.68 Total: 4.21 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -4.47 Total: -0.31 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.34 Total: -60.87 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.45 -10.71 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079794870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.314 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds