Wall clock time and date at job start Tue Mar 31 2020 22:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30815 * 119.23387 * 2 1 4 4 C 1.33791 * 121.71946 * 180.28800 * 3 2 1 5 5 C 1.40532 * 120.81636 * 179.70121 * 4 3 2 6 6 C 1.36129 * 119.81679 * 180.02562 * 5 4 3 7 7 C 1.39344 * 121.08827 * 359.95160 * 6 5 4 8 8 C 1.36136 * 120.84140 * 0.04831 * 7 6 5 9 9 C 1.40549 * 119.62140 * 359.97438 * 8 7 6 10 10 C 1.40494 * 121.23890 * 179.97438 * 9 8 7 11 11 C 1.39047 * 117.96321 * 180.02562 * 10 9 8 12 12 C 1.47759 * 120.26388 * 180.02562 * 11 10 9 13 13 O 1.21562 * 119.99907 * 173.69683 * 12 11 10 14 14 N 1.34773 * 120.00445 * 353.69330 * 12 11 10 15 15 C 1.46493 * 120.00285 * 180.02562 * 14 12 11 16 16 H 1.09006 * 110.77949 * 31.76612 * 15 14 12 17 17 C 1.54324 * 110.72176 * 268.52464 * 15 14 12 18 18 N 1.47021 * 107.27189 * 219.44596 * 17 15 14 19 19 C 1.36932 * 125.65160 * 178.98753 * 18 17 15 20 20 H 1.08001 * 120.00663 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99776 * 359.97184 * 19 18 17 22 22 N 1.31621 * 120.00105 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00101 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47177 * 59.99895 * 23 21 19 25 25 H 1.48498 * 109.47315 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46927 * 300.00012 * 23 21 19 27 27 C 1.47429 * 108.70297 * 358.93773 * 18 17 15 28 28 C 1.54909 * 104.83359 * 24.12987 * 27 18 17 29 29 H 1.09004 * 111.00271 * 81.06049 * 28 27 18 30 30 C 1.52999 * 111.03923 * 204.90125 * 28 27 18 31 31 H 1.09004 * 109.47064 * 263.57377 * 1 2 3 32 32 H 1.08996 * 109.46738 * 23.57215 * 1 2 3 33 33 H 1.08999 * 109.46979 * 143.57630 * 1 2 3 34 34 H 1.08005 * 120.09164 * 0.02562 * 5 4 3 35 35 H 1.08001 * 119.45369 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.57782 * 180.02562 * 7 6 5 37 37 H 1.07998 * 120.18933 * 179.97438 * 8 7 6 38 38 H 1.08004 * 121.01743 * 0.04185 * 10 9 8 39 39 H 0.97005 * 119.99536 * 0.02562 * 14 12 11 40 40 H 1.09002 * 109.88123 * 338.85737 * 17 15 14 41 41 H 1.08996 * 109.88467 * 99.87199 * 17 15 14 42 42 H 0.96992 * 120.00149 * 179.97438 * 22 21 19 43 43 H 1.09005 * 110.36833 * 265.29218 * 27 18 17 44 44 H 1.09001 * 110.36589 * 142.97174 * 27 18 17 45 45 H 1.08999 * 109.47192 * 175.39239 * 30 28 27 46 46 H 1.08994 * 109.47004 * 295.39513 * 30 28 27 47 47 H 1.09004 * 109.46780 * 55.39318 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1415 0.0000 4 6 3.4825 1.1996 -0.0057 5 6 4.1494 2.4366 -0.0119 6 6 5.5102 2.4719 -0.0182 7 6 6.2605 1.2976 -0.0176 8 6 5.6513 0.0802 -0.0117 9 6 4.2478 0.0057 -0.0056 10 6 3.5839 -1.2324 0.0001 11 6 2.1934 -1.2266 0.0054 12 6 1.4434 -2.4998 0.0120 13 8 0.2338 -2.4920 0.1323 14 7 2.1004 -3.6696 -0.1153 15 6 1.3568 -4.9318 -0.1092 16 1 0.3661 -4.7990 -0.5443 17 6 1.2529 -5.4975 1.3228 18 7 1.4238 -6.9548 1.2299 19 6 1.4174 -7.8280 2.2846 20 1 1.5513 -8.8856 2.1111 21 6 1.2387 -7.3540 3.5770 22 7 1.0760 -6.0651 3.7887 23 14 1.2306 -8.5450 5.0160 24 1 2.5303 -9.2613 5.0730 25 1 1.0233 -7.7932 6.2797 26 1 0.1313 -9.5276 4.8391 27 6 1.6020 -7.3205 -0.1872 28 6 2.1438 -6.0362 -0.8631 29 1 3.2165 -5.9318 -0.7002 30 6 1.8149 -6.0213 -2.3572 31 1 -0.3633 -0.1150 1.0212 32 1 -0.3633 0.9419 -0.4110 33 1 -0.3633 -0.8269 -0.6102 34 1 3.5839 3.3567 -0.0117 35 1 6.0167 3.4257 -0.0233 36 1 7.3390 1.3541 -0.0223 37 1 6.2431 -0.8232 -0.0117 38 1 4.1366 -2.1603 0.0005 39 1 3.0657 -3.6758 -0.2109 40 1 2.0380 -5.0714 1.9475 41 1 0.2756 -5.2627 1.7442 42 1 0.9508 -5.7339 4.6916 43 1 0.6471 -7.6072 -0.6280 44 1 2.3233 -8.1322 -0.2817 45 1 2.1341 -5.0732 -2.7901 46 1 2.3363 -6.8405 -2.8522 47 1 0.7400 -6.1394 -2.4938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079794870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:20 Heat of formation + Delta-G solvation = 26.044460 kcal Electronic energy + Delta-G solvation = -29033.823199 eV Core-core repulsion = 25181.184801 eV Total energy + Delta-G solvation = -3852.638399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.15907 -40.81819 -39.26692 -37.98351 -35.81961 -34.89528 -34.03265 -32.85075 -32.17401 -31.33610 -29.53401 -28.69610 -27.36764 -26.00917 -25.07557 -23.62762 -23.13605 -22.58440 -21.57337 -21.33261 -19.42203 -18.89772 -18.53303 -17.90076 -17.19522 -16.91292 -16.61314 -16.32168 -15.80704 -15.62861 -15.50125 -15.19412 -15.07501 -14.72630 -14.43354 -14.36438 -14.10420 -13.98471 -13.95198 -13.68612 -13.33790 -13.14638 -13.00527 -12.85003 -12.70523 -12.56768 -12.41712 -12.34471 -12.25646 -12.01062 -11.85430 -11.66311 -11.61743 -11.46500 -11.02613 -10.73794 -10.50296 -10.08571 -9.70943 -9.26361 -8.92315 -7.84573 -5.22220 -0.84102 -0.41854 0.83237 1.44278 1.48153 1.51516 1.54481 2.01244 2.20277 2.49391 3.02917 3.12594 3.33618 3.40510 3.48500 3.58681 3.65323 3.75388 3.80994 4.05477 4.06889 4.10677 4.21928 4.32144 4.39323 4.50434 4.56984 4.61993 4.66291 4.72367 4.73581 4.82655 4.89179 4.92489 5.04337 5.06403 5.08586 5.13768 5.27780 5.31587 5.36371 5.44671 5.45817 5.49906 5.50278 5.62102 5.78258 5.87248 6.16597 6.47962 6.80874 7.06185 7.17412 7.76073 8.39589 9.24127 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.002862 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.364067 B = 9779.692137 C =10189.639094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.195 3.805 3 N -0.502 5.502 4 C 0.123 3.877 5 C -0.125 4.125 6 C -0.074 4.074 7 C -0.120 4.120 8 C -0.087 4.087 9 C -0.134 4.134 10 C 0.000 4.000 11 C -0.203 4.203 12 C 0.560 3.440 13 O -0.561 6.561 14 N -0.694 5.694 15 C 0.137 3.863 16 H 0.079 0.921 17 C 0.188 3.812 18 N -0.627 5.627 19 C -0.241 4.241 20 H 0.088 0.912 21 C -0.069 4.069 22 N -0.952 5.952 23 Si 0.979 3.021 24 H -0.271 1.271 25 H -0.299 1.299 26 H -0.278 1.278 27 C 0.132 3.868 28 C -0.093 4.093 29 H 0.094 0.906 30 C -0.129 4.129 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.410 0.590 40 H 0.018 0.982 41 H -0.009 1.009 42 H 0.243 0.757 43 H 0.025 0.975 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.506 14.583 -13.892 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.042 3.958 3 N -0.211 5.211 4 C 0.002 3.998 5 C -0.143 4.143 6 C -0.094 4.094 7 C -0.137 4.137 8 C -0.106 4.106 9 C -0.136 4.136 10 C -0.026 4.026 11 C -0.208 4.208 12 C 0.348 3.652 13 O -0.441 6.441 14 N -0.345 5.345 15 C 0.031 3.969 16 H 0.097 0.903 17 C 0.061 3.939 18 N -0.354 5.354 19 C -0.370 4.370 20 H 0.106 0.894 21 C -0.262 4.262 22 N -0.601 5.601 23 Si 0.807 3.193 24 H -0.197 1.197 25 H -0.225 1.225 26 H -0.204 1.204 27 C 0.007 3.993 28 C -0.113 4.113 29 H 0.112 0.888 30 C -0.187 4.187 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.159 0.841 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.178 0.822 38 H 0.190 0.810 39 H 0.248 0.752 40 H 0.036 0.964 41 H 0.009 0.991 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.244 15.406 -13.602 23.922 hybrid contribution 0.080 -1.298 1.458 1.954 sum 12.324 14.107 -12.144 22.324 Atomic orbital electron populations 1.20981 0.87586 1.03829 1.03669 1.21643 0.97888 0.86748 0.89557 1.67879 1.09465 1.27969 1.15834 1.19515 0.88929 0.94756 0.96607 1.21022 0.95490 0.95670 1.02163 1.21434 0.92714 1.00701 0.94527 1.21407 1.02272 0.91473 0.98565 1.21430 0.91137 1.00726 0.97263 1.19028 0.96472 0.92917 1.05191 1.22337 0.92270 0.99181 0.88774 1.20678 0.95085 0.94084 1.11002 1.18242 0.87002 0.83973 0.75994 1.90727 1.15250 1.87390 1.50713 1.45614 1.11131 1.04632 1.73126 1.22113 0.95879 0.82667 0.96201 0.90266 1.21111 0.97104 0.83636 0.92027 1.44708 1.85332 1.02997 1.02346 1.19466 1.41869 0.90021 0.85653 0.89388 1.25712 1.02525 0.97765 1.00221 1.70223 1.56983 1.13178 1.19703 0.85138 0.78383 0.77630 0.78101 1.19708 1.22521 1.20385 1.21862 0.97833 0.96226 0.83382 1.22550 0.99940 0.92957 0.95877 0.88794 1.21653 1.01761 1.02965 0.92308 0.90898 0.90104 0.88923 0.84138 0.81795 0.81773 0.82185 0.80984 0.75210 0.96377 0.99109 0.94749 0.95694 0.92545 0.91389 0.90325 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.15 8.82 71.24 0.63 -2.52 16 2 C 0.19 6.09 6.82 43.28 0.30 6.38 16 3 N -0.50 -15.05 10.20 -175.85 -1.79 -16.84 16 4 C 0.12 3.13 6.61 40.29 0.27 3.40 16 5 C -0.12 -2.36 9.97 22.34 0.22 -2.13 16 6 C -0.07 -0.90 9.94 22.05 0.22 -0.68 16 7 C -0.12 -1.29 9.96 22.05 0.22 -1.07 16 8 C -0.09 -1.25 9.77 22.34 0.22 -1.03 16 9 C -0.13 -2.94 5.74 -21.28 -0.12 -3.06 16 10 C 0.00 0.01 9.38 23.01 0.22 0.23 16 11 C -0.20 -6.06 5.89 -20.00 -0.12 -6.17 16 12 C 0.56 19.47 7.69 86.76 0.67 20.13 16 13 O -0.56 -23.52 12.96 -3.91 -0.05 -23.57 16 14 N -0.69 -21.75 5.05 -439.87 -2.22 -23.98 16 15 C 0.14 5.15 2.78 46.18 0.13 5.28 16 16 H 0.08 3.21 7.45 -2.38 -0.02 3.19 16 17 C 0.19 9.60 5.12 86.73 0.44 10.05 16 18 N -0.63 -32.27 3.39 -691.97 -2.35 -34.62 16 19 C -0.24 -13.57 10.28 84.04 0.86 -12.70 16 20 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 21 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 22 N -0.95 -59.44 10.31 21.65 0.22 -59.22 16 23 Si 0.98 46.50 29.55 68.60 2.03 48.52 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 C 0.13 5.10 6.70 86.85 0.58 5.68 16 28 C -0.09 -2.82 3.27 -9.40 -0.03 -2.85 16 29 H 0.09 2.55 8.01 -2.38 -0.02 2.53 16 30 C -0.13 -2.89 9.29 71.98 0.67 -2.23 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 3.03 5.82 -2.39 -0.01 3.02 16 34 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 37 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.17 2.73 6.53 -2.91 -0.02 2.71 16 39 H 0.41 9.78 6.67 -92.70 -0.62 9.17 16 40 H 0.02 1.02 7.27 -2.39 -0.02 1.01 16 41 H -0.01 -0.58 7.50 -2.39 -0.02 -0.60 16 42 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.03 0.97 8.03 -2.38 -0.02 0.95 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 Total: -1.00 -79.53 380.80 2.04 -77.49 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.37 Total: 19.08 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.83 Total: 13.14 kcal Atomic # 7 Polarization: -128.51 SS G_CDS: -6.14 Total: -134.65 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -79.53 2.04 -77.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079794870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.532 kcal (2) G-P(sol) polarization free energy of solvation -79.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds