Wall clock time and date at job start Tue Mar 31 2020 22:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36543 * 120.87579 * 2 1 4 4 C 1.40243 * 119.81174 * 180.26324 * 3 2 1 5 5 C 1.48275 * 119.23497 * 179.74151 * 4 3 2 6 6 O 1.21506 * 119.99875 * 359.73822 * 5 4 3 7 7 N 1.34778 * 119.99872 * 179.73179 * 5 4 3 8 8 C 1.46500 * 119.99572 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.78242 * 31.76274 * 8 7 5 10 10 C 1.54327 * 110.84789 * 268.69019 * 8 7 5 11 11 N 1.47032 * 107.26586 * 219.67541 * 10 8 7 12 12 C 1.36931 * 125.64719 * 178.85180 * 11 10 8 13 13 H 1.08002 * 120.00103 * 179.69760 * 12 11 10 14 14 C 1.38812 * 120.00429 * 359.69263 * 12 11 10 15 15 N 1.31624 * 119.99535 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00484 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00576 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00326 * 16 14 12 19 19 H 1.48498 * 109.47210 * 150.00037 * 16 14 12 20 20 C 1.47428 * 108.70123 * 358.58848 * 11 10 8 21 21 C 1.54912 * 104.83095 * 24.35753 * 20 11 10 22 22 H 1.08993 * 111.01019 * 81.06270 * 21 20 11 23 23 C 1.52998 * 110.99964 * 204.91758 * 21 20 11 24 24 N 1.31903 * 121.52567 * 359.47112 * 4 3 2 25 25 C 1.33237 * 121.29670 * 0.27389 * 24 4 3 26 26 C 1.40834 * 120.99947 * 179.97438 * 25 24 4 27 27 C 1.36002 * 119.73766 * 180.02562 * 26 25 24 28 28 C 1.39436 * 121.08744 * 359.95821 * 27 26 25 29 29 C 1.36131 * 120.92108 * 0.02562 * 28 27 26 30 30 C 1.40419 * 119.64870 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.47146 * 270.23358 * 1 2 3 32 32 H 1.09001 * 109.47276 * 30.23842 * 1 2 3 33 33 H 1.09001 * 109.46468 * 150.23606 * 1 2 3 34 34 H 1.08004 * 120.09242 * 0.03321 * 3 2 1 35 35 H 0.96997 * 119.99554 * 359.97438 * 7 5 4 36 36 H 1.09006 * 109.99153 * 100.20658 * 10 8 7 37 37 H 1.08994 * 109.78600 * 339.03309 * 10 8 7 38 38 H 0.97005 * 119.99717 * 179.97438 * 15 14 12 39 39 H 1.08997 * 110.36556 * 143.19064 * 20 11 10 40 40 H 1.08991 * 110.36533 * 265.40365 * 20 11 10 41 41 H 1.09001 * 109.47544 * 58.54332 * 23 21 20 42 42 H 1.09005 * 109.46735 * 178.54473 * 23 21 20 43 43 H 1.09002 * 109.47189 * 298.54218 * 23 21 20 44 44 H 1.07996 * 120.13044 * 0.02562 * 26 25 24 45 45 H 1.07997 * 119.45228 * 179.97438 * 27 26 25 46 46 H 1.08001 * 119.53751 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.17386 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1459 -0.0056 5 6 4.3580 2.4261 -0.0114 6 8 3.7559 3.4815 -0.0160 7 7 5.7057 2.4191 -0.0113 8 6 6.4448 3.6840 -0.0164 9 1 5.8917 4.4572 0.5169 10 6 6.7503 4.1357 -1.4601 11 7 8.1124 4.6895 -1.4651 12 6 8.7702 5.1806 -2.5611 13 1 9.7718 5.5716 -2.4594 14 6 8.1498 5.1757 -3.8028 15 7 6.9290 4.6995 -3.9267 16 14 9.0469 5.8464 -5.2978 17 1 8.7611 7.2968 -5.4372 18 1 10.5085 5.6438 -5.1300 19 1 8.5845 5.1315 -6.5145 20 6 8.6501 4.6342 -0.0935 21 6 7.8574 3.4968 0.5977 22 1 8.2692 2.5211 0.3402 23 6 7.8263 3.6936 2.1146 24 7 4.2787 0.0090 -0.0005 25 6 3.6482 -1.1648 0.0047 26 6 4.3685 -2.3750 0.0095 27 6 3.6988 -3.5587 0.0143 28 6 2.3050 -3.5973 0.0153 29 6 1.5734 -2.4492 0.0111 30 6 2.2293 -1.2076 0.0061 31 1 -0.3633 0.0042 1.0276 32 1 -0.3634 0.8878 -0.5175 33 1 -0.3632 -0.8921 -0.5102 34 1 1.6836 2.1163 0.0005 35 1 6.1863 1.5765 -0.0071 36 1 6.0381 4.9006 -1.7699 37 1 6.6954 3.2806 -2.1337 38 1 6.4954 4.6965 -4.7944 39 1 9.7140 4.3978 -0.1124 40 1 8.4818 5.5816 0.4184 41 1 7.3713 4.6564 2.3470 42 1 7.2418 2.8955 2.5726 43 1 8.8437 3.6688 2.5052 44 1 5.4484 -2.3631 0.0095 45 1 4.2558 -4.4839 0.0176 46 1 1.7987 -4.5513 0.0187 47 1 0.4943 -2.4932 0.0115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079982119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:14 Heat of formation + Delta-G solvation = 42.596792 kcal Electronic energy + Delta-G solvation = -28824.913822 eV Core-core repulsion = 24972.993186 eV Total energy + Delta-G solvation = -3851.920636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22351 -39.43191 -37.68314 -36.84777 -35.03016 -33.82301 -32.55800 -30.92734 -30.58600 -30.32351 -28.11997 -27.78033 -25.64573 -24.95924 -23.78987 -23.34582 -21.69262 -20.64469 -19.97541 -19.63408 -18.23616 -17.89303 -17.13987 -16.80561 -15.79471 -15.49916 -15.19966 -14.93949 -14.80108 -14.49756 -14.11563 -14.00826 -13.69800 -13.56619 -13.30055 -13.27979 -13.01370 -12.72502 -12.63210 -12.43962 -12.02378 -11.88535 -11.76821 -11.66710 -11.61268 -11.29549 -10.97684 -10.74297 -10.60906 -10.41646 -10.36597 -10.13592 -9.92497 -9.87653 -9.66339 -9.46578 -8.99428 -8.58326 -8.47469 -8.38036 -6.78847 -5.64599 -2.99776 0.02637 0.50670 1.72805 2.36492 3.28243 3.37138 3.44141 3.48402 3.50831 3.97885 4.00478 4.24225 4.46884 4.53384 4.56401 4.61106 4.88129 4.92638 5.04596 5.13553 5.15380 5.25161 5.26507 5.36874 5.46619 5.50697 5.59611 5.64835 5.76010 5.77948 5.81651 5.85917 6.04303 6.05137 6.11160 6.18185 6.20845 6.23680 6.27989 6.39157 6.53904 6.58278 6.67448 6.80210 6.98718 7.49587 7.61681 7.66734 7.89185 7.97535 8.30138 8.52928 9.26042 9.86969 10.52104 11.46044 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.002774 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.849400 B =10090.374174 C =10496.035928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.033 4.033 3 C -0.127 4.127 4 C 0.132 3.868 5 C 0.565 3.435 6 O -0.530 6.530 7 N -0.687 5.687 8 C 0.117 3.883 9 H 0.091 0.909 10 C 0.173 3.827 11 N -0.606 5.606 12 C -0.229 4.229 13 H 0.079 0.921 14 C -0.008 4.008 15 N -0.919 5.919 16 Si 0.912 3.088 17 H -0.289 1.289 18 H -0.281 1.281 19 H -0.291 1.291 20 C 0.141 3.859 21 C -0.113 4.113 22 H 0.078 0.922 23 C -0.137 4.137 24 N -0.448 5.448 25 C 0.128 3.872 26 C -0.084 4.084 27 C -0.107 4.107 28 C -0.112 4.112 29 C -0.102 4.102 30 C -0.089 4.089 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.407 0.593 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.252 0.748 39 H 0.042 0.958 40 H 0.022 0.978 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.139 0.861 45 H 0.130 0.870 46 H 0.127 0.873 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.379 -17.269 12.252 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.041 4.041 3 C -0.148 4.148 4 C -0.021 4.021 5 C 0.349 3.651 6 O -0.405 6.405 7 N -0.336 5.336 8 C 0.012 3.988 9 H 0.109 0.891 10 C 0.047 3.953 11 N -0.333 5.333 12 C -0.358 4.358 13 H 0.097 0.903 14 C -0.205 4.205 15 N -0.566 5.566 16 Si 0.743 3.257 17 H -0.216 1.216 18 H -0.207 1.207 19 H -0.217 1.217 20 C 0.015 3.985 21 C -0.133 4.133 22 H 0.097 0.903 23 C -0.195 4.195 24 N -0.160 5.160 25 C 0.004 3.996 26 C -0.102 4.102 27 C -0.127 4.127 28 C -0.130 4.130 29 C -0.120 4.120 30 C -0.091 4.091 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.169 0.831 35 H 0.242 0.758 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.157 0.843 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.890 -16.515 12.004 23.139 hybrid contribution -0.209 -0.127 -0.975 1.005 sum -11.099 -16.642 11.030 22.843 Atomic orbital electron populations 1.20869 0.89522 1.03823 1.03200 1.20126 0.96873 0.91668 0.95438 1.21659 0.93747 0.99729 0.99646 1.21484 0.91728 0.92280 0.96613 1.17826 0.82779 0.87017 0.77523 1.90788 1.68640 1.30981 1.50123 1.45775 1.05423 1.10410 1.72017 1.22598 0.90876 0.84823 1.00467 0.89129 1.21485 0.86602 0.98280 0.88895 1.44407 1.13194 1.72941 1.02708 1.19044 0.97701 1.33690 0.85331 0.90318 1.24833 0.96661 1.01337 0.97661 1.69980 1.12637 1.50918 1.23052 0.86117 0.78637 0.78411 0.82575 1.21612 1.20715 1.21744 1.21582 0.96108 0.94285 0.86570 1.22617 0.95595 1.00609 0.94508 0.90342 1.21695 1.01225 1.01475 0.95066 1.67852 1.39842 0.97351 1.10943 1.18858 0.89743 0.92089 0.98881 1.20907 1.00667 0.89955 0.98693 1.20920 0.94449 0.98055 0.99246 1.20970 0.94174 0.98496 0.99392 1.21010 1.00105 0.91127 0.99777 1.18830 0.93973 0.94315 1.02018 0.90105 0.90268 0.90703 0.83114 0.75758 0.93381 0.93027 0.93768 0.93948 0.96004 0.92617 0.93140 0.92715 0.84335 0.85173 0.85500 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.59 36.01 0.35 -0.51 16 2 C -0.03 -0.37 5.92 -104.30 -0.62 -0.99 16 3 C -0.13 -1.74 9.23 -39.44 -0.36 -2.10 16 4 C 0.13 2.11 6.75 -82.96 -0.56 1.55 16 5 C 0.57 10.51 7.81 -12.13 -0.09 10.41 16 6 O -0.53 -11.29 15.93 5.36 0.09 -11.21 16 7 N -0.69 -12.39 5.10 -52.83 -0.27 -12.66 16 8 C 0.12 2.34 2.78 -66.09 -0.18 2.16 16 9 H 0.09 1.89 7.42 -51.93 -0.39 1.50 16 10 C 0.17 4.43 5.13 -3.06 -0.02 4.41 16 11 N -0.61 -15.87 3.39 -170.06 -0.58 -16.45 16 12 C -0.23 -6.53 10.28 -15.06 -0.15 -6.69 16 13 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 15 N -0.92 -28.03 10.31 55.49 0.57 -27.46 16 16 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 20 C 0.14 2.94 6.70 -2.53 -0.02 2.92 16 21 C -0.11 -1.98 3.27 -88.47 -0.29 -2.27 16 22 H 0.08 1.34 8.01 -51.93 -0.42 0.92 16 23 C -0.14 -1.92 9.30 37.16 0.35 -1.57 16 24 N -0.45 -6.74 9.47 -7.54 -0.07 -6.81 16 25 C 0.13 1.68 6.61 -84.85 -0.56 1.12 16 26 C -0.08 -0.88 9.99 -39.40 -0.39 -1.28 16 27 C -0.11 -0.86 9.94 -39.94 -0.40 -1.26 16 28 C -0.11 -0.84 9.95 -39.89 -0.40 -1.23 16 29 C -0.10 -0.87 9.31 -39.52 -0.37 -1.23 16 30 C -0.09 -1.03 5.75 -106.72 -0.61 -1.64 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.07 0.43 6.51 -51.93 -0.34 0.09 16 34 H 0.15 1.97 7.60 -52.48 -0.40 1.57 16 35 H 0.41 6.67 7.86 -40.82 -0.32 6.35 16 36 H 0.05 1.41 7.52 -51.93 -0.39 1.02 16 37 H 0.05 1.46 7.25 -51.93 -0.38 1.09 16 38 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.02 0.45 8.04 -51.93 -0.42 0.04 16 41 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 46 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 47 H 0.13 0.78 6.43 -52.49 -0.34 0.44 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -34.37 384.59 -10.65 -45.01 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.73 Total: 4.69 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -4.43 Total: 1.46 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.35 Total: -63.38 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.37 -10.65 -45.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079982119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.609 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds