Wall clock time and date at job start Tue Mar 31 2020 22:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36543 * 120.87579 * 2 1 4 4 C 1.40243 * 119.81174 * 180.26324 * 3 2 1 5 5 C 1.48275 * 119.23497 * 179.74151 * 4 3 2 6 6 O 1.21506 * 119.99875 * 359.73822 * 5 4 3 7 7 N 1.34778 * 119.99872 * 179.73179 * 5 4 3 8 8 C 1.46500 * 119.99572 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.78242 * 31.76274 * 8 7 5 10 10 C 1.54327 * 110.84789 * 268.69019 * 8 7 5 11 11 N 1.47032 * 107.26586 * 219.67541 * 10 8 7 12 12 C 1.36931 * 125.64719 * 178.85180 * 11 10 8 13 13 H 1.08002 * 120.00103 * 179.69760 * 12 11 10 14 14 C 1.38812 * 120.00429 * 359.69263 * 12 11 10 15 15 N 1.31624 * 119.99535 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00484 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00576 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00326 * 16 14 12 19 19 H 1.48498 * 109.47210 * 150.00037 * 16 14 12 20 20 C 1.47428 * 108.70123 * 358.58848 * 11 10 8 21 21 C 1.54912 * 104.83095 * 24.35753 * 20 11 10 22 22 H 1.08993 * 111.01019 * 81.06270 * 21 20 11 23 23 C 1.52998 * 110.99964 * 204.91758 * 21 20 11 24 24 N 1.31903 * 121.52567 * 359.47112 * 4 3 2 25 25 C 1.33237 * 121.29670 * 0.27389 * 24 4 3 26 26 C 1.40834 * 120.99947 * 179.97438 * 25 24 4 27 27 C 1.36002 * 119.73766 * 180.02562 * 26 25 24 28 28 C 1.39436 * 121.08744 * 359.95821 * 27 26 25 29 29 C 1.36131 * 120.92108 * 0.02562 * 28 27 26 30 30 C 1.40419 * 119.64870 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.47146 * 270.23358 * 1 2 3 32 32 H 1.09001 * 109.47276 * 30.23842 * 1 2 3 33 33 H 1.09001 * 109.46468 * 150.23606 * 1 2 3 34 34 H 1.08004 * 120.09242 * 0.03321 * 3 2 1 35 35 H 0.96997 * 119.99554 * 359.97438 * 7 5 4 36 36 H 1.09006 * 109.99153 * 100.20658 * 10 8 7 37 37 H 1.08994 * 109.78600 * 339.03309 * 10 8 7 38 38 H 0.97005 * 119.99717 * 179.97438 * 15 14 12 39 39 H 1.08997 * 110.36556 * 143.19064 * 20 11 10 40 40 H 1.08991 * 110.36533 * 265.40365 * 20 11 10 41 41 H 1.09001 * 109.47544 * 58.54332 * 23 21 20 42 42 H 1.09005 * 109.46735 * 178.54473 * 23 21 20 43 43 H 1.09002 * 109.47189 * 298.54218 * 23 21 20 44 44 H 1.07996 * 120.13044 * 0.02562 * 26 25 24 45 45 H 1.07997 * 119.45228 * 179.97438 * 27 26 25 46 46 H 1.08001 * 119.53751 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.17386 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1459 -0.0056 5 6 4.3580 2.4261 -0.0114 6 8 3.7559 3.4815 -0.0160 7 7 5.7057 2.4191 -0.0113 8 6 6.4448 3.6840 -0.0164 9 1 5.8917 4.4572 0.5169 10 6 6.7503 4.1357 -1.4601 11 7 8.1124 4.6895 -1.4651 12 6 8.7702 5.1806 -2.5611 13 1 9.7718 5.5716 -2.4594 14 6 8.1498 5.1757 -3.8028 15 7 6.9290 4.6995 -3.9267 16 14 9.0469 5.8464 -5.2978 17 1 8.7611 7.2968 -5.4372 18 1 10.5085 5.6438 -5.1300 19 1 8.5845 5.1315 -6.5145 20 6 8.6501 4.6342 -0.0935 21 6 7.8574 3.4968 0.5977 22 1 8.2692 2.5211 0.3402 23 6 7.8263 3.6936 2.1146 24 7 4.2787 0.0090 -0.0005 25 6 3.6482 -1.1648 0.0047 26 6 4.3685 -2.3750 0.0095 27 6 3.6988 -3.5587 0.0143 28 6 2.3050 -3.5973 0.0153 29 6 1.5734 -2.4492 0.0111 30 6 2.2293 -1.2076 0.0061 31 1 -0.3633 0.0042 1.0276 32 1 -0.3634 0.8878 -0.5175 33 1 -0.3632 -0.8921 -0.5102 34 1 1.6836 2.1163 0.0005 35 1 6.1863 1.5765 -0.0071 36 1 6.0381 4.9006 -1.7699 37 1 6.6954 3.2806 -2.1337 38 1 6.4954 4.6965 -4.7944 39 1 9.7140 4.3978 -0.1124 40 1 8.4818 5.5816 0.4184 41 1 7.3713 4.6564 2.3470 42 1 7.2418 2.8955 2.5726 43 1 8.8437 3.6688 2.5052 44 1 5.4484 -2.3631 0.0095 45 1 4.2558 -4.4839 0.0176 46 1 1.7987 -4.5513 0.0187 47 1 0.4943 -2.4932 0.0115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079982119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:13 Heat of formation + Delta-G solvation = 20.317853 kcal Electronic energy + Delta-G solvation = -28825.879909 eV Core-core repulsion = 24972.993186 eV Total energy + Delta-G solvation = -3852.886723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17702 -40.87445 -39.24662 -37.85040 -35.99304 -35.54955 -34.27629 -32.21420 -31.85806 -31.31968 -29.62571 -28.77592 -27.44404 -26.24092 -24.99380 -24.54392 -22.78269 -22.09788 -21.59979 -21.10571 -19.15645 -18.97104 -18.89788 -18.12566 -17.34758 -16.93692 -16.44951 -16.32591 -15.84715 -15.64796 -15.43282 -15.24651 -15.08272 -14.79617 -14.54635 -14.31018 -14.11455 -13.97491 -13.90582 -13.74102 -13.36961 -13.08992 -13.00213 -12.88237 -12.71672 -12.63664 -12.60655 -12.35550 -12.20727 -12.11668 -11.88281 -11.70873 -11.51163 -11.40552 -11.21229 -10.77294 -10.63411 -10.13477 -9.82446 -9.21433 -8.95282 -7.86076 -5.24613 -0.87862 -0.37064 0.89939 1.33269 1.42843 1.46310 1.54909 1.94400 2.21032 2.47909 2.91774 3.05299 3.32196 3.46690 3.52169 3.62848 3.71574 3.75412 3.84306 4.01121 4.06434 4.14251 4.20983 4.30663 4.44042 4.47655 4.49651 4.57356 4.65576 4.68190 4.74830 4.85757 4.99319 5.01736 5.02644 5.04940 5.09580 5.12050 5.15328 5.24857 5.39946 5.42269 5.45132 5.46310 5.51668 5.55770 5.72591 5.86695 6.13823 6.33707 6.67184 7.02187 7.08594 7.73108 8.37578 9.23350 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.002774 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.849400 B =10090.374174 C =10496.035928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.020 4.020 3 C -0.153 4.153 4 C 0.104 3.896 5 C 0.562 3.438 6 O -0.568 6.568 7 N -0.681 5.681 8 C 0.132 3.868 9 H 0.081 0.919 10 C 0.190 3.810 11 N -0.627 5.627 12 C -0.241 4.241 13 H 0.091 0.909 14 C -0.073 4.073 15 N -0.955 5.955 16 Si 0.984 3.016 17 H -0.287 1.287 18 H -0.262 1.262 19 H -0.297 1.297 20 C 0.134 3.866 21 C -0.095 4.095 22 H 0.087 0.913 23 C -0.128 4.128 24 N -0.464 5.464 25 C 0.100 3.900 26 C -0.110 4.110 27 C -0.090 4.090 28 C -0.102 4.102 29 C -0.103 4.103 30 C -0.102 4.102 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.415 0.585 36 H -0.006 1.006 37 H 0.014 0.986 38 H 0.244 0.756 39 H 0.058 0.942 40 H 0.030 0.970 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.139 0.861 45 H 0.163 0.837 46 H 0.167 0.833 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.692 -20.664 13.664 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.028 4.028 3 C -0.174 4.174 4 C -0.048 4.048 5 C 0.348 3.652 6 O -0.446 6.446 7 N -0.331 5.331 8 C 0.026 3.974 9 H 0.099 0.901 10 C 0.063 3.937 11 N -0.354 5.354 12 C -0.370 4.370 13 H 0.109 0.891 14 C -0.265 4.265 15 N -0.604 5.604 16 Si 0.811 3.189 17 H -0.214 1.214 18 H -0.187 1.187 19 H -0.223 1.223 20 C 0.009 3.991 21 C -0.115 4.115 22 H 0.105 0.895 23 C -0.185 4.185 24 N -0.177 5.177 25 C -0.024 4.024 26 C -0.128 4.128 27 C -0.110 4.110 28 C -0.119 4.119 29 C -0.121 4.121 30 C -0.104 4.104 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.162 0.838 35 H 0.252 0.748 36 H 0.012 0.988 37 H 0.032 0.968 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.157 0.843 45 H 0.181 0.819 46 H 0.185 0.815 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.163 -19.924 13.463 26.511 hybrid contribution -0.158 0.723 -1.393 1.577 sum -11.321 -19.201 12.070 25.348 Atomic orbital electron populations 1.21008 0.86398 1.05110 1.04731 1.20562 0.98882 0.90589 0.92803 1.21663 0.92950 1.00776 1.01999 1.21065 0.92387 0.91284 1.00018 1.18368 0.82758 0.87938 0.76173 1.90742 1.69317 1.32741 1.51821 1.45650 1.05512 1.09954 1.71976 1.22221 0.92800 0.85597 0.96770 0.90078 1.21082 0.85738 0.95154 0.91726 1.44729 1.13429 1.72699 1.04530 1.19540 0.98238 1.32930 0.86268 0.89124 1.25788 0.97532 1.02283 1.00936 1.70261 1.14439 1.52662 1.23001 0.84999 0.78285 0.77325 0.78254 1.21370 1.18654 1.22329 1.21850 0.97232 0.95868 0.84154 1.22550 0.92385 0.99757 0.96762 0.89458 1.21643 1.03185 1.01965 0.91739 1.67719 1.40615 0.97839 1.11500 1.19343 0.91221 0.91999 0.99854 1.21088 1.01061 0.90094 1.00581 1.21383 0.95273 0.98171 0.96165 1.21497 0.93881 0.99851 0.96701 1.21404 1.01854 0.89936 0.98909 1.19159 0.93470 0.95826 1.01908 0.88178 0.90111 0.88296 0.83750 0.74770 0.98821 0.96784 0.94725 0.92401 0.95218 0.92716 0.91799 0.90084 0.84267 0.81948 0.81519 0.81817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.59 71.24 0.68 -0.74 16 2 C -0.02 -0.44 5.92 -19.65 -0.12 -0.56 16 3 C -0.15 -4.46 9.23 22.36 0.21 -4.25 16 4 C 0.10 3.60 6.75 42.29 0.29 3.88 16 5 C 0.56 22.80 7.81 86.91 0.68 23.48 16 6 O -0.57 -26.54 15.93 -3.74 -0.06 -26.60 16 7 N -0.68 -26.35 5.10 -439.34 -2.24 -28.59 16 8 C 0.13 5.58 2.78 46.18 0.13 5.71 16 9 H 0.08 3.60 7.42 -2.39 -0.02 3.58 16 10 C 0.19 10.44 5.13 86.73 0.45 10.89 16 11 N -0.63 -34.12 3.39 -691.96 -2.35 -36.47 16 12 C -0.24 -14.08 10.28 84.03 0.86 -13.21 16 13 H 0.09 4.94 7.83 -2.91 -0.02 4.92 16 14 C -0.07 -4.38 5.49 84.86 0.47 -3.92 16 15 N -0.95 -61.85 10.31 21.65 0.22 -61.63 16 16 Si 0.98 47.89 29.55 68.60 2.03 49.92 16 17 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 20 C 0.13 5.56 6.70 86.86 0.58 6.14 16 21 C -0.09 -3.28 3.27 -9.40 -0.03 -3.31 16 22 H 0.09 2.90 8.01 -2.39 -0.02 2.88 16 23 C -0.13 -3.32 9.30 71.98 0.67 -2.66 16 24 N -0.46 -14.77 9.47 -177.76 -1.68 -16.46 16 25 C 0.10 2.62 6.61 40.49 0.27 2.89 16 26 C -0.11 -2.19 9.99 22.39 0.22 -1.97 16 27 C -0.09 -1.13 9.94 22.04 0.22 -0.91 16 28 C -0.10 -1.02 9.95 22.07 0.22 -0.80 16 29 C -0.10 -1.35 9.31 22.31 0.21 -1.14 16 30 C -0.10 -2.19 5.75 -21.22 -0.12 -2.32 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 33 H 0.10 0.74 6.51 -2.39 -0.02 0.72 16 34 H 0.14 4.19 7.60 -2.91 -0.02 4.17 16 35 H 0.42 14.46 7.86 -92.71 -0.73 13.73 16 36 H -0.01 -0.42 7.52 -2.38 -0.02 -0.44 16 37 H 0.01 0.86 7.25 -2.39 -0.02 0.84 16 38 H 0.24 15.43 8.31 -92.70 -0.77 14.66 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.03 1.21 8.04 -2.39 -0.02 1.19 16 41 H 0.05 1.45 8.11 -2.39 -0.02 1.43 16 42 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 44 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 45 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 46 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 47 H 0.16 1.05 6.43 -2.91 -0.02 1.03 16 Total: -1.00 -82.74 384.59 2.06 -80.68 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.26 Total: 21.96 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 5.88 Total: 17.20 kcal Atomic # 7 Polarization: -137.10 SS G_CDS: -6.05 Total: -143.15 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.06 Total: -26.60 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -82.74 2.06 -80.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079982119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.001 kcal (2) G-P(sol) polarization free energy of solvation -82.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds