Wall clock time and date at job start Tue Mar 31 2020 22:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39433 * 119.54604 * 2 1 4 4 C 1.35995 * 121.08411 * 179.97438 * 3 2 1 5 5 C 1.40830 * 119.73902 * 359.97438 * 4 3 2 6 6 N 1.33268 * 120.98727 * 180.27721 * 5 4 3 7 7 C 1.31885 * 121.29680 * 180.21732 * 6 5 4 8 8 C 1.48272 * 119.24297 * 179.76276 * 7 6 5 9 9 O 1.21502 * 120.00182 * 179.72756 * 8 7 6 10 10 N 1.34777 * 119.99551 * 359.72529 * 8 7 6 11 11 C 1.46504 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.64126 * 31.86126 * 11 10 8 13 13 C 1.54319 * 110.87353 * 268.61413 * 11 10 8 14 14 N 1.47026 * 107.27282 * 219.37031 * 13 11 10 15 15 C 1.36937 * 125.65097 * 178.90593 * 14 13 11 16 16 H 1.08003 * 119.99677 * 174.88373 * 15 14 13 17 17 C 1.38815 * 119.99793 * 354.87883 * 15 14 13 18 18 N 1.31617 * 119.99880 * 7.06201 * 17 15 14 19 19 Si 1.86797 * 119.99588 * 187.06358 * 17 15 14 20 20 H 1.48502 * 109.47386 * 94.98825 * 19 17 15 21 21 H 1.48504 * 109.47013 * 214.98424 * 19 17 15 22 22 H 1.48492 * 109.47413 * 334.98676 * 19 17 15 23 23 C 1.47534 * 108.71297 * 358.94517 * 14 13 11 24 24 C 1.54910 * 104.78228 * 24.11501 * 23 14 13 25 25 H 1.09001 * 111.00500 * 81.09163 * 24 23 14 26 26 C 1.52995 * 111.00366 * 204.90148 * 24 23 14 27 27 C 1.40281 * 121.51632 * 359.48100 * 7 6 5 28 28 C 1.36502 * 119.81776 * 0.26015 * 27 7 6 29 29 C 1.40752 * 118.24155 * 359.97438 * 28 27 7 30 30 C 1.36135 * 119.53889 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47339 * 270.02694 * 1 2 3 32 32 H 1.09003 * 109.46606 * 30.02494 * 1 2 3 33 33 H 1.08994 * 109.47313 * 150.02143 * 1 2 3 34 34 H 1.07998 * 119.45668 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.13341 * 180.02562 * 4 3 2 36 36 H 0.96998 * 120.00626 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.88336 * 338.79040 * 13 11 10 38 38 H 1.09000 * 109.88658 * 99.80307 * 13 11 10 39 39 H 0.97003 * 119.99760 * 180.02562 * 18 17 15 40 40 H 1.09000 * 110.36628 * 265.30868 * 23 14 13 41 41 H 1.08997 * 110.41194 * 142.95258 * 23 14 13 42 42 H 1.09003 * 109.47420 * 175.41809 * 26 24 23 43 43 H 1.08997 * 109.47782 * 295.41988 * 26 24 23 44 44 H 1.09002 * 109.47184 * 55.42549 * 26 24 23 45 45 H 1.08001 * 120.08908 * 180.27337 * 27 7 6 46 46 H 1.08004 * 120.87835 * 179.97438 * 28 27 7 47 47 H 1.07994 * 120.18211 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2130 0.0000 4 6 3.5540 1.2495 0.0005 5 6 4.2852 0.0459 0.0016 6 7 5.6178 0.0526 0.0077 7 6 6.3086 -1.0708 0.0045 8 6 7.7901 -1.0102 0.0061 9 8 8.4402 -2.0367 0.0082 10 7 8.4156 0.1837 0.0053 11 6 9.8794 0.2436 0.0075 12 1 10.2996 -0.6071 -0.5289 13 6 10.4251 0.3032 1.4498 14 7 11.5573 1.2412 1.4498 15 6 12.3042 1.5906 2.5430 16 1 13.1694 2.2262 2.4250 17 6 11.9492 1.1280 3.8028 18 7 10.9820 0.2447 3.9310 19 14 12.8443 1.7594 5.3159 20 1 12.0832 2.8900 5.9055 21 1 12.9600 0.6664 6.3146 22 1 14.2012 2.2236 4.9307 23 6 11.7550 1.7444 0.0771 24 6 10.3750 1.5793 -0.6070 25 1 9.7083 2.4010 -0.3452 26 6 10.5260 1.4620 -2.1250 27 6 5.6740 -2.3219 0.0054 28 6 4.3108 -2.3915 0.0043 29 6 3.5824 -1.1871 0.0028 30 6 2.1781 -1.1844 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6384 2.1388 0.0004 35 1 4.0709 2.1978 0.0009 36 1 7.8967 1.0032 0.0040 37 1 9.6480 0.6601 2.1257 38 1 10.7606 -0.6863 1.7604 39 1 10.7337 -0.0783 4.8113 40 1 12.5083 1.1500 -0.4400 41 1 12.0462 2.7946 0.0955 42 1 9.5519 1.2658 -2.5730 43 1 10.9280 2.3935 -2.5233 44 1 11.2056 0.6429 -2.3603 45 1 6.2625 -3.2275 0.0071 46 1 3.8045 -3.3455 0.0046 47 1 1.6336 -2.1170 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080093700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:42 Heat of formation + Delta-G solvation = 40.706906 kcal Electronic energy + Delta-G solvation = -28571.378833 eV Core-core repulsion = 24719.376245 eV Total energy + Delta-G solvation = -3852.002587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15607 -39.46984 -37.83641 -37.07340 -34.10480 -33.61451 -32.68875 -32.16002 -30.47157 -30.33249 -28.34682 -27.15945 -25.59084 -24.55481 -23.90859 -23.06646 -22.29733 -20.87476 -19.98755 -19.70744 -18.19609 -17.72579 -17.00990 -16.81329 -15.76475 -15.61001 -15.12127 -14.82619 -14.62295 -14.54705 -14.20676 -14.10497 -13.75811 -13.53797 -13.43499 -13.30837 -13.04171 -12.73515 -12.68916 -12.61803 -11.96715 -11.81705 -11.69503 -11.64896 -11.44357 -11.30015 -10.96978 -10.79694 -10.75776 -10.60806 -10.36282 -10.14864 -9.94049 -9.87933 -9.65978 -9.47965 -8.92364 -8.57605 -8.48455 -8.36685 -6.79016 -5.66366 -3.00275 0.02573 0.49635 1.73206 2.34991 3.26023 3.36705 3.43657 3.48376 3.50985 3.97584 4.00622 4.29622 4.43220 4.49808 4.54112 4.73476 4.76544 4.88575 5.03728 5.13949 5.18737 5.21343 5.25526 5.35147 5.49804 5.51768 5.52090 5.59358 5.73122 5.78033 5.81309 5.86776 6.02145 6.04597 6.06190 6.20185 6.20662 6.23408 6.27294 6.39445 6.53540 6.57063 6.67283 6.79842 6.98302 7.48053 7.60783 7.66988 7.88718 7.96847 8.29430 8.52535 9.25228 9.86312 10.51925 11.44715 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.002631 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.909898 B =10639.902813 C =11264.803211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.105 4.105 4 C -0.079 4.079 5 C 0.120 3.880 6 N -0.442 5.442 7 C 0.125 3.875 8 C 0.565 3.435 9 O -0.530 6.530 10 N -0.687 5.687 11 C 0.117 3.883 12 H 0.091 0.909 13 C 0.172 3.828 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.917 5.917 19 Si 0.910 3.090 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.141 3.859 24 C -0.113 4.113 25 H 0.078 0.922 26 C -0.137 4.137 27 C -0.121 4.121 28 C -0.067 4.067 29 C -0.085 4.085 30 C -0.105 4.105 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.407 0.593 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.252 0.748 40 H 0.022 0.978 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.152 0.848 46 H 0.145 0.855 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.455 -0.793 -12.202 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.125 4.125 4 C -0.097 4.097 5 C -0.003 4.003 6 N -0.153 5.153 7 C -0.028 4.028 8 C 0.349 3.651 9 O -0.406 6.406 10 N -0.337 5.337 11 C 0.013 3.987 12 H 0.109 0.891 13 C 0.047 3.953 14 N -0.333 5.333 15 C -0.358 4.358 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.564 5.564 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.015 3.985 24 C -0.133 4.133 25 H 0.097 0.903 26 C -0.195 4.195 27 C -0.142 4.142 28 C -0.093 4.093 29 C -0.087 4.087 30 C -0.123 4.123 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.242 0.758 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.170 0.830 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.554 -0.716 -11.957 23.790 hybrid contribution -0.272 -0.123 1.006 1.049 sum -20.826 -0.839 -10.951 23.545 Atomic orbital electron populations 1.20854 0.90757 1.03055 1.02654 1.19745 0.96512 0.93016 0.98543 1.20810 0.93956 0.97833 0.99901 1.20895 0.93544 0.97003 0.98307 1.18851 0.88967 0.92951 0.99580 1.67848 1.07378 1.29949 1.10148 1.21516 0.94710 0.89431 0.97183 1.17829 0.85347 0.84459 0.77504 1.90788 1.65711 1.33906 1.50149 1.45781 1.07827 1.08020 1.72038 1.22589 0.77909 0.97827 1.00419 0.89117 1.21476 0.90297 0.94594 0.88968 1.44433 1.35859 1.50007 1.02965 1.19050 1.06523 1.25904 0.84355 0.90285 1.24850 0.98765 0.99257 0.97526 1.69992 1.32014 1.32317 1.22035 0.86123 0.78797 0.77941 0.83065 1.21683 1.21806 1.20619 1.21612 0.92921 0.97443 0.86571 1.22618 0.99282 0.96939 0.94503 0.90346 1.21696 1.01205 1.01509 0.95073 1.21796 0.95070 0.99098 0.98204 1.21432 0.93697 0.97738 0.96429 1.18941 0.94791 0.94042 1.00914 1.20826 0.92122 0.98285 1.01106 0.90812 0.91245 0.91340 0.85161 0.84266 0.75776 0.92939 0.93534 0.93762 0.96005 0.93871 0.93125 0.92739 0.92606 0.83043 0.83771 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 9.98 36.00 0.36 -0.22 16 2 C -0.08 -0.62 5.85 -104.94 -0.61 -1.23 16 3 C -0.11 -0.87 9.58 -39.94 -0.38 -1.26 16 4 C -0.08 -0.83 9.99 -39.41 -0.39 -1.23 16 5 C 0.12 1.56 6.61 -84.86 -0.56 1.00 16 6 N -0.44 -6.57 9.47 -7.54 -0.07 -6.64 16 7 C 0.13 1.97 6.75 -82.95 -0.56 1.41 16 8 C 0.57 10.42 7.81 -12.13 -0.09 10.32 16 9 O -0.53 -11.22 15.92 5.36 0.09 -11.14 16 10 N -0.69 -12.33 5.10 -52.84 -0.27 -12.60 16 11 C 0.12 2.34 2.78 -66.10 -0.18 2.16 16 12 H 0.09 1.88 7.44 -51.93 -0.39 1.50 16 13 C 0.17 4.40 5.14 -3.06 -0.02 4.38 16 14 N -0.61 -15.86 3.40 -169.98 -0.58 -16.43 16 15 C -0.23 -6.55 10.27 -15.06 -0.15 -6.70 16 16 H 0.08 2.16 7.84 -52.48 -0.41 1.75 16 17 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 18 N -0.92 -27.94 10.36 55.49 0.57 -27.36 16 19 Si 0.91 22.61 29.56 -169.99 -5.02 17.58 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 C 0.14 2.93 6.71 -2.47 -0.02 2.91 16 24 C -0.11 -1.98 3.26 -88.47 -0.29 -2.27 16 25 H 0.08 1.33 8.01 -51.93 -0.42 0.92 16 26 C -0.14 -1.92 9.29 37.15 0.35 -1.57 16 27 C -0.12 -1.59 9.54 -39.44 -0.38 -1.97 16 28 C -0.07 -0.71 9.88 -39.26 -0.39 -1.10 16 29 C -0.08 -0.96 5.75 -106.71 -0.61 -1.57 16 30 C -0.10 -0.91 9.37 -39.51 -0.37 -1.28 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 33 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.41 6.63 7.87 -40.82 -0.32 6.31 16 37 H 0.05 1.48 7.19 -51.93 -0.37 1.11 16 38 H 0.05 1.37 7.61 -51.93 -0.40 0.97 16 39 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.02 0.45 8.03 -51.93 -0.42 0.04 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 45 H 0.15 1.89 7.60 -52.49 -0.40 1.49 16 46 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 47 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -34.24 388.13 -10.73 -44.97 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.90 Total: 4.29 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -4.40 Total: 1.48 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.34 Total: -63.03 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.24 -10.73 -44.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080093700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.677 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds