Wall clock time and date at job start Tue Mar 31 2020 22:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39433 * 119.54604 * 2 1 4 4 C 1.35995 * 121.08411 * 179.97438 * 3 2 1 5 5 C 1.40830 * 119.73902 * 359.97438 * 4 3 2 6 6 N 1.33268 * 120.98727 * 180.27721 * 5 4 3 7 7 C 1.31885 * 121.29680 * 180.21732 * 6 5 4 8 8 C 1.48272 * 119.24297 * 179.76276 * 7 6 5 9 9 O 1.21502 * 120.00182 * 179.72756 * 8 7 6 10 10 N 1.34777 * 119.99551 * 359.72529 * 8 7 6 11 11 C 1.46504 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.64126 * 31.86126 * 11 10 8 13 13 C 1.54319 * 110.87353 * 268.61413 * 11 10 8 14 14 N 1.47026 * 107.27282 * 219.37031 * 13 11 10 15 15 C 1.36937 * 125.65097 * 178.90593 * 14 13 11 16 16 H 1.08003 * 119.99677 * 174.88373 * 15 14 13 17 17 C 1.38815 * 119.99793 * 354.87883 * 15 14 13 18 18 N 1.31617 * 119.99880 * 7.06201 * 17 15 14 19 19 Si 1.86797 * 119.99588 * 187.06358 * 17 15 14 20 20 H 1.48502 * 109.47386 * 94.98825 * 19 17 15 21 21 H 1.48504 * 109.47013 * 214.98424 * 19 17 15 22 22 H 1.48492 * 109.47413 * 334.98676 * 19 17 15 23 23 C 1.47534 * 108.71297 * 358.94517 * 14 13 11 24 24 C 1.54910 * 104.78228 * 24.11501 * 23 14 13 25 25 H 1.09001 * 111.00500 * 81.09163 * 24 23 14 26 26 C 1.52995 * 111.00366 * 204.90148 * 24 23 14 27 27 C 1.40281 * 121.51632 * 359.48100 * 7 6 5 28 28 C 1.36502 * 119.81776 * 0.26015 * 27 7 6 29 29 C 1.40752 * 118.24155 * 359.97438 * 28 27 7 30 30 C 1.36135 * 119.53889 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47339 * 270.02694 * 1 2 3 32 32 H 1.09003 * 109.46606 * 30.02494 * 1 2 3 33 33 H 1.08994 * 109.47313 * 150.02143 * 1 2 3 34 34 H 1.07998 * 119.45668 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.13341 * 180.02562 * 4 3 2 36 36 H 0.96998 * 120.00626 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.88336 * 338.79040 * 13 11 10 38 38 H 1.09000 * 109.88658 * 99.80307 * 13 11 10 39 39 H 0.97003 * 119.99760 * 180.02562 * 18 17 15 40 40 H 1.09000 * 110.36628 * 265.30868 * 23 14 13 41 41 H 1.08997 * 110.41194 * 142.95258 * 23 14 13 42 42 H 1.09003 * 109.47420 * 175.41809 * 26 24 23 43 43 H 1.08997 * 109.47782 * 295.41988 * 26 24 23 44 44 H 1.09002 * 109.47184 * 55.42549 * 26 24 23 45 45 H 1.08001 * 120.08908 * 180.27337 * 27 7 6 46 46 H 1.08004 * 120.87835 * 179.97438 * 28 27 7 47 47 H 1.07994 * 120.18211 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2130 0.0000 4 6 3.5540 1.2495 0.0005 5 6 4.2852 0.0459 0.0016 6 7 5.6178 0.0526 0.0077 7 6 6.3086 -1.0708 0.0045 8 6 7.7901 -1.0102 0.0061 9 8 8.4402 -2.0367 0.0082 10 7 8.4156 0.1837 0.0053 11 6 9.8794 0.2436 0.0075 12 1 10.2996 -0.6071 -0.5289 13 6 10.4251 0.3032 1.4498 14 7 11.5573 1.2412 1.4498 15 6 12.3042 1.5906 2.5430 16 1 13.1694 2.2262 2.4250 17 6 11.9492 1.1280 3.8028 18 7 10.9820 0.2447 3.9310 19 14 12.8443 1.7594 5.3159 20 1 12.0832 2.8900 5.9055 21 1 12.9600 0.6664 6.3146 22 1 14.2012 2.2236 4.9307 23 6 11.7550 1.7444 0.0771 24 6 10.3750 1.5793 -0.6070 25 1 9.7083 2.4010 -0.3452 26 6 10.5260 1.4620 -2.1250 27 6 5.6740 -2.3219 0.0054 28 6 4.3108 -2.3915 0.0043 29 6 3.5824 -1.1871 0.0028 30 6 2.1781 -1.1844 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6384 2.1388 0.0004 35 1 4.0709 2.1978 0.0009 36 1 7.8967 1.0032 0.0040 37 1 9.6480 0.6601 2.1257 38 1 10.7606 -0.6863 1.7604 39 1 10.7337 -0.0783 4.8113 40 1 12.5083 1.1500 -0.4400 41 1 12.0462 2.7946 0.0955 42 1 9.5519 1.2658 -2.5730 43 1 10.9280 2.3935 -2.5233 44 1 11.2056 0.6429 -2.3603 45 1 6.2625 -3.2275 0.0071 46 1 3.8045 -3.3455 0.0046 47 1 1.6336 -2.1170 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080093700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:41 Heat of formation + Delta-G solvation = 18.834788 kcal Electronic energy + Delta-G solvation = -28572.327279 eV Core-core repulsion = 24719.376245 eV Total energy + Delta-G solvation = -3852.951034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10792 -40.87155 -39.28169 -38.18797 -35.73338 -34.74302 -34.22590 -33.05242 -32.19127 -31.28846 -29.83741 -28.27535 -27.34887 -25.68672 -25.17601 -24.24451 -23.08727 -22.43046 -21.59800 -21.27690 -19.13754 -18.93580 -18.88677 -17.86611 -17.30022 -16.95192 -16.52259 -16.27732 -15.74504 -15.63165 -15.37087 -15.17983 -15.04511 -14.84143 -14.61616 -14.18327 -14.13931 -14.11405 -14.03200 -13.75373 -13.37035 -13.15635 -13.07345 -12.87545 -12.62416 -12.45889 -12.39239 -12.23773 -12.18503 -12.09491 -11.89821 -11.70620 -11.65960 -11.49827 -11.40513 -10.75641 -10.64512 -10.11282 -9.74456 -9.19484 -8.94745 -7.87317 -5.24528 -0.87757 -0.36828 0.89030 1.34882 1.43037 1.45886 1.55138 1.95725 2.18014 2.47807 2.91367 3.04449 3.30815 3.50214 3.57527 3.66178 3.73912 3.76504 3.87092 4.00455 4.01882 4.06993 4.16822 4.32520 4.40970 4.45369 4.57904 4.66447 4.68620 4.75648 4.86486 4.90077 4.91072 5.00821 5.03142 5.05227 5.06566 5.15191 5.22948 5.25833 5.31295 5.41547 5.44897 5.46878 5.56033 5.56661 5.73076 5.85595 6.13929 6.34276 6.66870 7.02429 7.09506 7.73001 8.37913 9.22670 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.002631 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.909898 B =10639.902813 C =11264.803211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.092 4.092 4 C -0.101 4.101 5 C 0.092 3.908 6 N -0.457 5.457 7 C 0.097 3.903 8 C 0.562 3.438 9 O -0.568 6.568 10 N -0.682 5.682 11 C 0.132 3.868 12 H 0.082 0.918 13 C 0.189 3.811 14 N -0.628 5.628 15 C -0.241 4.241 16 H 0.090 0.910 17 C -0.072 4.072 18 N -0.953 5.953 19 Si 0.982 3.018 20 H -0.285 1.285 21 H -0.298 1.298 22 H -0.262 1.262 23 C 0.134 3.866 24 C -0.095 4.095 25 H 0.087 0.913 26 C -0.128 4.128 27 C -0.141 4.141 28 C -0.049 4.049 29 C -0.094 4.094 30 C -0.107 4.107 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.415 0.585 37 H 0.016 0.984 38 H -0.008 1.008 39 H 0.244 0.756 40 H 0.030 0.970 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.149 0.851 46 H 0.185 0.815 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.358 0.543 -13.592 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.073 4.073 3 C -0.112 4.112 4 C -0.120 4.120 5 C -0.032 4.032 6 N -0.169 5.169 7 C -0.056 4.056 8 C 0.348 3.652 9 O -0.446 6.446 10 N -0.332 5.332 11 C 0.026 3.974 12 H 0.100 0.900 13 C 0.062 3.938 14 N -0.354 5.354 15 C -0.370 4.370 16 H 0.108 0.892 17 C -0.264 4.264 18 N -0.602 5.602 19 Si 0.810 3.190 20 H -0.212 1.212 21 H -0.225 1.225 22 H -0.187 1.187 23 C 0.009 3.991 24 C -0.115 4.115 25 H 0.105 0.895 26 C -0.185 4.185 27 C -0.162 4.162 28 C -0.074 4.074 29 C -0.096 4.096 30 C -0.125 4.125 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.178 0.822 35 H 0.159 0.841 36 H 0.252 0.748 37 H 0.034 0.966 38 H 0.010 0.990 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.167 0.833 46 H 0.202 0.798 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.451 0.661 -13.394 27.014 hybrid contribution 0.432 -0.488 1.421 1.563 sum -23.019 0.173 -11.973 25.947 Atomic orbital electron populations 1.20938 0.88155 1.04471 1.03624 1.20206 0.98353 0.92451 0.96279 1.21226 0.93125 0.99541 0.97303 1.21062 0.94636 0.96410 0.99880 1.19300 0.88408 0.94830 1.00633 1.67709 1.08798 1.29809 1.10561 1.21110 0.92841 0.90973 1.00633 1.18378 0.86928 0.83782 0.76146 1.90745 1.67044 1.34990 1.51830 1.45659 1.06909 1.08583 1.72024 1.22209 0.79126 0.99339 0.96717 0.90027 1.21084 0.89375 0.91509 0.91819 1.44762 1.35614 1.50275 1.04783 1.19533 1.06902 1.25239 0.85348 0.89180 1.25791 1.00077 0.99736 1.00816 1.70265 1.34039 1.33926 1.21943 0.85000 0.78351 0.76900 0.78750 1.21242 1.22519 1.18668 1.21877 0.95056 0.98036 0.84135 1.22547 0.97036 0.95116 0.96767 0.89489 1.21642 1.02218 1.02943 0.91739 1.21822 0.96438 0.97949 1.00003 1.21845 0.92461 0.99344 0.93772 1.19255 0.96262 0.93515 1.00567 1.21184 0.90833 1.00141 1.00389 0.89849 0.89943 0.89968 0.82236 0.84058 0.74793 0.96625 0.99005 0.94680 0.95213 0.92358 0.91860 0.90105 0.92648 0.83318 0.79750 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 9.98 71.23 0.71 0.09 16 2 C -0.07 -0.88 5.85 -20.07 -0.12 -0.99 16 3 C -0.09 -1.27 9.58 22.04 0.21 -1.06 16 4 C -0.10 -2.04 9.99 22.38 0.22 -1.82 16 5 C 0.09 2.38 6.61 40.47 0.27 2.65 16 6 N -0.46 -14.18 9.47 -177.77 -1.68 -15.87 16 7 C 0.10 3.23 6.75 42.30 0.29 3.51 16 8 C 0.56 22.35 7.81 86.91 0.68 23.03 16 9 O -0.57 -26.09 15.92 -3.72 -0.06 -26.15 16 10 N -0.68 -26.03 5.10 -439.37 -2.24 -28.27 16 11 C 0.13 5.54 2.78 46.18 0.13 5.66 16 12 H 0.08 3.59 7.44 -2.39 -0.02 3.57 16 13 C 0.19 10.34 5.14 86.73 0.45 10.78 16 14 N -0.63 -34.04 3.40 -691.70 -2.35 -36.39 16 15 C -0.24 -14.08 10.27 84.03 0.86 -13.22 16 16 H 0.09 4.92 7.84 -2.91 -0.02 4.90 16 17 C -0.07 -4.29 5.48 84.86 0.46 -3.82 16 18 N -0.95 -61.54 10.36 21.65 0.22 -61.31 16 19 Si 0.98 47.74 29.56 68.60 2.03 49.77 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.13 5.53 6.71 86.83 0.58 6.11 16 24 C -0.09 -3.27 3.26 -9.40 -0.03 -3.30 16 25 H 0.09 2.87 8.01 -2.39 -0.02 2.85 16 26 C -0.13 -3.30 9.29 71.98 0.67 -2.63 16 27 C -0.14 -3.87 9.54 22.36 0.21 -3.66 16 28 C -0.05 -0.97 9.88 22.48 0.22 -0.75 16 29 C -0.09 -1.97 5.75 -21.22 -0.12 -2.09 16 30 C -0.11 -1.49 9.37 22.31 0.21 -1.28 16 31 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.08 0.28 8.08 -2.39 -0.02 0.26 16 33 H 0.08 0.27 8.07 -2.39 -0.02 0.25 16 34 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.41 14.25 7.87 -92.71 -0.73 13.52 16 37 H 0.02 0.95 7.19 -2.39 -0.02 0.94 16 38 H -0.01 -0.53 7.61 -2.39 -0.02 -0.55 16 39 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 45 H 0.15 4.00 7.60 -2.91 -0.02 3.97 16 46 H 0.19 2.02 8.06 -2.91 -0.02 1.99 16 47 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -81.40 388.13 2.08 -79.32 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.25 Total: 21.67 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 5.90 Total: 17.23 kcal Atomic # 7 Polarization: -135.79 SS G_CDS: -6.05 Total: -141.84 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -81.40 2.08 -79.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080093700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.156 kcal (2) G-P(sol) polarization free energy of solvation -81.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds