Wall clock time and date at job start Tue Mar 31 2020 22:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36548 * 120.09417 * 2 1 4 4 C 1.40710 * 118.24381 * 180.25812 * 3 2 1 5 5 C 1.40424 * 121.28948 * 179.68108 * 4 3 2 6 6 C 1.36133 * 119.65165 * 179.97438 * 5 4 3 7 7 C 1.39429 * 120.92050 * 0.04392 * 6 5 4 8 8 C 1.35995 * 121.08967 * 359.97438 * 7 6 5 9 9 C 1.40833 * 119.73358 * 0.02562 * 8 7 6 10 10 N 1.33241 * 120.98237 * 179.97438 * 9 8 7 11 11 C 1.31900 * 121.29215 * 180.02562 * 10 9 8 12 12 C 1.48279 * 119.23606 * 179.97438 * 11 10 9 13 13 O 1.21501 * 119.99941 * 174.43611 * 12 11 10 14 14 N 1.34779 * 120.00212 * 354.15780 * 12 11 10 15 15 C 1.46489 * 120.00347 * 180.27516 * 14 12 11 16 16 H 1.09001 * 110.88725 * 34.30305 * 15 14 12 17 17 C 1.54907 * 111.00682 * 270.42187 * 15 14 12 18 18 N 1.47471 * 104.81422 * 204.94686 * 17 15 14 19 19 C 1.36934 * 125.63424 * 204.13791 * 18 17 15 20 20 H 1.07998 * 120.00535 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99581 * 359.92078 * 19 18 17 22 22 N 1.31624 * 120.00398 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99967 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47108 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47494 * 119.99909 * 23 21 19 26 26 H 1.48502 * 109.46933 * 240.00107 * 23 21 19 27 27 C 1.47029 * 108.72008 * 24.07123 * 18 17 15 28 28 C 1.54323 * 107.26775 * 358.97321 * 27 18 17 29 29 H 1.08997 * 110.86982 * 96.24792 * 28 27 18 30 30 C 1.53005 * 110.71747 * 219.44400 * 28 27 18 31 31 H 1.08999 * 109.47227 * 263.41396 * 1 2 3 32 32 H 1.09007 * 109.46791 * 23.41632 * 1 2 3 33 33 H 1.09001 * 109.46723 * 143.40677 * 1 2 3 34 34 H 1.08002 * 120.87097 * 359.93374 * 3 2 1 35 35 H 1.08002 * 120.17459 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.53653 * 180.02562 * 6 5 4 37 37 H 1.08005 * 119.45638 * 179.97438 * 7 6 5 38 38 H 1.08004 * 120.13462 * 180.02562 * 8 7 6 39 39 H 0.97001 * 119.99780 * 0.28212 * 14 12 11 40 40 H 1.08998 * 110.36939 * 323.75173 * 17 15 14 41 41 H 1.09001 * 110.37129 * 86.07542 * 17 15 14 42 42 H 0.97001 * 119.99936 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.88003 * 239.56019 * 27 18 17 44 44 H 1.08999 * 110.00957 * 118.46170 * 27 18 17 45 45 H 1.09000 * 109.47008 * 173.52538 * 30 28 27 46 46 H 1.09006 * 109.46990 * 293.52318 * 30 28 27 47 47 H 1.08999 * 109.47090 * 53.52549 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1814 0.0000 4 6 3.5980 1.1360 -0.0056 5 6 4.3657 2.3118 -0.0126 6 6 5.7245 2.2290 -0.0173 7 6 6.3668 0.9915 -0.0162 8 6 5.6567 -0.1683 -0.0099 9 6 4.2491 -0.1255 -0.0049 10 7 3.5287 -1.2464 0.0009 11 6 2.2102 -1.2133 0.0051 12 6 1.4538 -2.4887 0.0109 13 8 0.2435 -2.4768 0.1168 14 7 2.1084 -3.6610 -0.1071 15 6 1.3606 -4.9207 -0.1075 16 1 0.3928 -4.7980 -0.5937 17 6 1.1933 -5.4676 1.3322 18 7 1.0142 -6.9217 1.1647 19 6 0.3862 -7.7555 2.0509 20 1 0.3059 -8.8108 1.8357 21 6 -0.1462 -7.2445 3.2266 22 7 -0.0470 -5.9587 3.4898 23 14 -1.0023 -8.3820 4.4361 24 1 -0.9790 -9.7709 3.9109 25 1 -0.2983 -8.3356 5.7427 26 1 -2.4098 -7.9440 4.6163 27 6 1.6201 -7.3278 -0.1120 28 6 2.1805 -6.0539 -0.7788 29 1 3.2432 -5.9394 -0.5656 30 6 1.9331 -6.0797 -2.2885 31 1 -0.3633 -0.1179 1.0209 32 1 -0.3633 0.9431 -0.4084 33 1 -0.3633 -0.8251 -0.6126 34 1 1.6675 2.1257 -0.0011 35 1 3.8806 3.2768 -0.0142 36 1 6.3131 3.1345 -0.0223 37 1 7.4462 0.9533 -0.0205 38 1 6.1702 -1.1185 -0.0087 39 1 3.0746 -3.6705 -0.1916 40 1 2.0860 -5.2612 1.9225 41 1 0.3149 -5.0285 1.8052 42 1 -0.4194 -5.6016 4.3113 43 1 0.8640 -7.7802 -0.7537 44 1 2.4272 -8.0381 0.0674 45 1 2.2314 -5.1251 -2.7219 46 1 2.5179 -6.8818 -2.7389 47 1 0.8738 -6.2505 -2.4802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080158355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:04 Heat of formation + Delta-G solvation = 48.620309 kcal Electronic energy + Delta-G solvation = -29047.498082 eV Core-core repulsion = 25195.838645 eV Total energy + Delta-G solvation = -3851.659437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.21746 -39.45295 -37.80032 -36.84905 -34.57086 -33.68850 -32.57744 -31.76769 -30.53291 -30.31333 -27.89204 -27.05727 -25.69209 -25.20532 -23.49361 -22.68919 -22.27186 -21.06188 -20.00301 -19.70701 -18.16536 -17.91374 -16.89241 -16.82891 -15.77828 -15.49118 -15.23398 -14.87061 -14.73522 -14.54793 -13.97764 -13.92231 -13.69489 -13.47391 -13.16742 -13.03129 -12.89826 -12.84627 -12.48546 -12.24231 -12.11798 -11.88193 -11.77995 -11.72341 -11.64965 -11.18300 -11.06123 -10.76974 -10.58965 -10.50690 -10.32263 -10.02738 -9.92419 -9.74198 -9.69061 -9.26735 -8.89384 -8.61363 -8.44289 -8.36477 -6.79440 -5.59059 -3.02685 0.03203 0.50818 1.74271 2.38044 3.28440 3.36696 3.43878 3.48595 3.51664 3.95606 4.01984 4.32327 4.51557 4.53141 4.55698 4.72306 4.86705 4.92538 5.07641 5.13801 5.17724 5.35335 5.48784 5.49583 5.53497 5.57653 5.72770 5.76823 5.80280 5.85322 5.94440 6.00197 6.08471 6.12070 6.15604 6.19725 6.22256 6.26543 6.40326 6.43764 6.53097 6.63256 6.70646 6.85722 6.99767 7.45401 7.57895 7.66678 7.89792 7.99156 8.41448 8.55162 9.25668 9.87056 10.50469 11.43767 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.002810 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.926386 B = 9960.608959 C =10422.723672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.082 4.082 3 C -0.075 4.075 4 C -0.084 4.084 5 C -0.103 4.103 6 C -0.110 4.110 7 C -0.111 4.111 8 C -0.081 4.081 9 C 0.117 3.883 10 N -0.440 5.440 11 C 0.125 3.875 12 C 0.564 3.436 13 O -0.518 6.518 14 N -0.690 5.690 15 C 0.118 3.882 16 H 0.093 0.907 17 C 0.150 3.850 18 N -0.603 5.603 19 C -0.225 4.225 20 H 0.079 0.921 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.142 3.858 28 C -0.111 4.111 29 H 0.074 0.926 30 C -0.137 4.137 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.404 0.596 40 H 0.014 0.986 41 H 0.113 0.887 42 H 0.252 0.748 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.902 17.595 -11.043 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.101 4.101 4 C -0.086 4.086 5 C -0.122 4.122 6 C -0.128 4.128 7 C -0.131 4.131 8 C -0.100 4.100 9 C -0.007 4.007 10 N -0.151 5.151 11 C -0.029 4.029 12 C 0.347 3.653 13 O -0.393 6.393 14 N -0.339 5.339 15 C 0.013 3.987 16 H 0.111 0.889 17 C 0.024 3.976 18 N -0.329 5.329 19 C -0.353 4.353 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.565 5.565 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.016 3.984 28 C -0.131 4.131 29 H 0.093 0.907 30 C -0.195 4.195 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.161 0.839 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.239 0.761 40 H 0.032 0.968 41 H 0.130 0.870 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.425 16.758 -10.763 22.480 hybrid contribution -0.085 0.299 0.756 0.817 sum 10.340 17.057 -10.007 22.316 Atomic orbital electron populations 1.21108 0.88615 1.03208 1.04503 1.20603 0.98759 0.92027 0.97073 1.21340 0.92363 0.98459 0.97898 1.18958 0.94250 0.94534 1.00823 1.20977 0.94086 0.97057 1.00045 1.20967 0.94643 0.98042 0.99161 1.20898 1.00444 0.92034 0.99676 1.20896 0.91087 0.99504 0.98499 1.18853 0.94188 0.87749 0.99875 1.67847 1.06606 1.30551 1.10132 1.21419 0.89449 0.94252 0.97778 1.17802 0.86798 0.82865 0.77807 1.90763 1.12934 1.86318 1.49330 1.45756 1.11062 1.05372 1.71730 1.22778 0.94595 0.80534 1.00829 0.88874 1.22238 1.02300 0.83776 0.89326 1.44413 1.65713 1.04167 1.18657 1.19105 1.28307 0.90298 0.97585 0.90287 1.24825 1.01338 0.96272 0.98201 1.69819 1.50364 1.10731 1.25608 0.86005 0.79057 0.79477 0.80982 1.20525 1.21814 1.21711 1.21333 0.95235 0.93494 0.88380 1.22428 0.99472 0.96403 0.94782 0.90723 1.21745 1.01788 1.00927 0.95017 0.90059 0.92454 0.87934 0.83865 0.85188 0.85518 0.85217 0.84425 0.76066 0.96809 0.86976 0.93749 0.95450 0.95862 0.93118 0.92850 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.68 36.00 0.31 -1.20 16 2 C -0.08 -1.11 5.89 -104.48 -0.62 -1.72 16 3 C -0.07 -0.82 9.50 -39.26 -0.37 -1.20 16 4 C -0.08 -0.95 5.75 -106.72 -0.61 -1.56 16 5 C -0.10 -0.87 9.77 -39.52 -0.39 -1.26 16 6 C -0.11 -0.82 9.95 -39.89 -0.40 -1.21 16 7 C -0.11 -0.88 9.94 -39.94 -0.40 -1.28 16 8 C -0.08 -0.84 9.99 -39.41 -0.39 -1.24 16 9 C 0.12 1.51 6.61 -84.85 -0.56 0.95 16 10 N -0.44 -6.53 9.48 -7.54 -0.07 -6.60 16 11 C 0.12 1.96 6.75 -82.96 -0.56 1.40 16 12 C 0.56 10.21 7.75 -12.13 -0.09 10.12 16 13 O -0.52 -10.62 12.91 5.36 0.07 -10.55 16 14 N -0.69 -12.11 5.20 -52.54 -0.27 -12.39 16 15 C 0.12 2.35 2.81 -65.79 -0.19 2.16 16 16 H 0.09 2.00 7.54 -51.93 -0.39 1.61 16 17 C 0.15 3.79 5.58 -2.50 -0.01 3.78 16 18 N -0.60 -15.82 3.40 -170.03 -0.58 -16.40 16 19 C -0.22 -6.40 10.27 -15.06 -0.15 -6.55 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 22 N -0.92 -27.75 10.09 55.49 0.56 -27.19 16 23 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C 0.14 2.98 6.84 -3.06 -0.02 2.96 16 28 C -0.11 -1.93 3.19 -88.79 -0.28 -2.22 16 29 H 0.07 1.21 7.99 -51.93 -0.42 0.80 16 30 C -0.14 -1.94 9.16 37.16 0.34 -1.60 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 33 H 0.10 1.53 5.80 -51.93 -0.30 1.22 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 37 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 38 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 39 H 0.40 6.35 7.85 -40.82 -0.32 6.03 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 3.31 5.88 -51.93 -0.31 3.01 16 42 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.03 0.57 7.76 -51.93 -0.40 0.16 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -33.30 381.93 -10.80 -44.10 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.75 Total: 5.76 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -4.49 Total: -0.06 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.36 Total: -62.58 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.30 -10.80 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080158355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.717 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds