Wall clock time and date at job start Tue Mar 31 2020 22:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36548 * 120.09417 * 2 1 4 4 C 1.40710 * 118.24381 * 180.25812 * 3 2 1 5 5 C 1.40424 * 121.28948 * 179.68108 * 4 3 2 6 6 C 1.36133 * 119.65165 * 179.97438 * 5 4 3 7 7 C 1.39429 * 120.92050 * 0.04392 * 6 5 4 8 8 C 1.35995 * 121.08967 * 359.97438 * 7 6 5 9 9 C 1.40833 * 119.73358 * 0.02562 * 8 7 6 10 10 N 1.33241 * 120.98237 * 179.97438 * 9 8 7 11 11 C 1.31900 * 121.29215 * 180.02562 * 10 9 8 12 12 C 1.48279 * 119.23606 * 179.97438 * 11 10 9 13 13 O 1.21501 * 119.99941 * 174.43611 * 12 11 10 14 14 N 1.34779 * 120.00212 * 354.15780 * 12 11 10 15 15 C 1.46489 * 120.00347 * 180.27516 * 14 12 11 16 16 H 1.09001 * 110.88725 * 34.30305 * 15 14 12 17 17 C 1.54907 * 111.00682 * 270.42187 * 15 14 12 18 18 N 1.47471 * 104.81422 * 204.94686 * 17 15 14 19 19 C 1.36934 * 125.63424 * 204.13791 * 18 17 15 20 20 H 1.07998 * 120.00535 * 179.97438 * 19 18 17 21 21 C 1.38813 * 119.99581 * 359.92078 * 19 18 17 22 22 N 1.31624 * 120.00398 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99967 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47108 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47494 * 119.99909 * 23 21 19 26 26 H 1.48502 * 109.46933 * 240.00107 * 23 21 19 27 27 C 1.47029 * 108.72008 * 24.07123 * 18 17 15 28 28 C 1.54323 * 107.26775 * 358.97321 * 27 18 17 29 29 H 1.08997 * 110.86982 * 96.24792 * 28 27 18 30 30 C 1.53005 * 110.71747 * 219.44400 * 28 27 18 31 31 H 1.08999 * 109.47227 * 263.41396 * 1 2 3 32 32 H 1.09007 * 109.46791 * 23.41632 * 1 2 3 33 33 H 1.09001 * 109.46723 * 143.40677 * 1 2 3 34 34 H 1.08002 * 120.87097 * 359.93374 * 3 2 1 35 35 H 1.08002 * 120.17459 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.53653 * 180.02562 * 6 5 4 37 37 H 1.08005 * 119.45638 * 179.97438 * 7 6 5 38 38 H 1.08004 * 120.13462 * 180.02562 * 8 7 6 39 39 H 0.97001 * 119.99780 * 0.28212 * 14 12 11 40 40 H 1.08998 * 110.36939 * 323.75173 * 17 15 14 41 41 H 1.09001 * 110.37129 * 86.07542 * 17 15 14 42 42 H 0.97001 * 119.99936 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.88003 * 239.56019 * 27 18 17 44 44 H 1.08999 * 110.00957 * 118.46170 * 27 18 17 45 45 H 1.09000 * 109.47008 * 173.52538 * 30 28 27 46 46 H 1.09006 * 109.46990 * 293.52318 * 30 28 27 47 47 H 1.08999 * 109.47090 * 53.52549 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1814 0.0000 4 6 3.5980 1.1360 -0.0056 5 6 4.3657 2.3118 -0.0126 6 6 5.7245 2.2290 -0.0173 7 6 6.3668 0.9915 -0.0162 8 6 5.6567 -0.1683 -0.0099 9 6 4.2491 -0.1255 -0.0049 10 7 3.5287 -1.2464 0.0009 11 6 2.2102 -1.2133 0.0051 12 6 1.4538 -2.4887 0.0109 13 8 0.2435 -2.4768 0.1168 14 7 2.1084 -3.6610 -0.1071 15 6 1.3606 -4.9207 -0.1075 16 1 0.3928 -4.7980 -0.5937 17 6 1.1933 -5.4676 1.3322 18 7 1.0142 -6.9217 1.1647 19 6 0.3862 -7.7555 2.0509 20 1 0.3059 -8.8108 1.8357 21 6 -0.1462 -7.2445 3.2266 22 7 -0.0470 -5.9587 3.4898 23 14 -1.0023 -8.3820 4.4361 24 1 -0.9790 -9.7709 3.9109 25 1 -0.2983 -8.3356 5.7427 26 1 -2.4098 -7.9440 4.6163 27 6 1.6201 -7.3278 -0.1120 28 6 2.1805 -6.0539 -0.7788 29 1 3.2432 -5.9394 -0.5656 30 6 1.9331 -6.0797 -2.2885 31 1 -0.3633 -0.1179 1.0209 32 1 -0.3633 0.9431 -0.4084 33 1 -0.3633 -0.8251 -0.6126 34 1 1.6675 2.1257 -0.0011 35 1 3.8806 3.2768 -0.0142 36 1 6.3131 3.1345 -0.0223 37 1 7.4462 0.9533 -0.0205 38 1 6.1702 -1.1185 -0.0087 39 1 3.0746 -3.6705 -0.1916 40 1 2.0860 -5.2612 1.9225 41 1 0.3149 -5.0285 1.8052 42 1 -0.4194 -5.6016 4.3113 43 1 0.8640 -7.7802 -0.7537 44 1 2.4272 -8.0381 0.0674 45 1 2.2314 -5.1251 -2.7219 46 1 2.5179 -6.8818 -2.7389 47 1 0.8738 -6.2505 -2.4802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080158355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:03 Heat of formation + Delta-G solvation = 27.525102 kcal Electronic energy + Delta-G solvation = -29048.412839 eV Core-core repulsion = 25195.838645 eV Total energy + Delta-G solvation = -3852.574193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18458 -40.80740 -39.30655 -37.88273 -35.91142 -35.12838 -34.20486 -32.62268 -32.19585 -31.39640 -29.55710 -28.03085 -27.43637 -26.40572 -25.14379 -23.58333 -23.01352 -22.64338 -21.63384 -21.27613 -19.25074 -18.96492 -18.88653 -17.69975 -17.33322 -16.97521 -16.46076 -16.36069 -15.68323 -15.59293 -15.42773 -15.11698 -15.08640 -14.56221 -14.44165 -14.28460 -14.19669 -14.00061 -13.93407 -13.85087 -13.40152 -13.21635 -13.05134 -12.87068 -12.64666 -12.61030 -12.57243 -12.47536 -12.15599 -12.02255 -11.85778 -11.67076 -11.45260 -11.38245 -11.10509 -10.79746 -10.50841 -10.07178 -9.68657 -9.20477 -8.92571 -7.78368 -5.25688 -0.85290 -0.34838 0.92631 1.39301 1.43706 1.46002 1.56449 1.98570 2.21002 2.48068 2.94457 3.07415 3.31144 3.51884 3.62446 3.64843 3.71073 3.75688 3.90264 4.00329 4.06990 4.10924 4.22417 4.36806 4.41461 4.47310 4.58099 4.62409 4.62817 4.76285 4.81687 4.86569 4.94501 5.00977 5.05978 5.06083 5.09831 5.15897 5.22948 5.35361 5.38818 5.42579 5.47860 5.48763 5.55030 5.62646 5.77662 5.88094 6.24834 6.38716 6.69161 7.04481 7.15114 7.74225 8.37491 9.22524 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.002810 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.926386 B = 9960.608959 C =10422.723672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.057 4.057 4 C -0.095 4.095 5 C -0.104 4.104 6 C -0.101 4.101 7 C -0.094 4.094 8 C -0.107 4.107 9 C 0.091 3.909 10 N -0.456 5.456 11 C 0.096 3.904 12 C 0.558 3.442 13 O -0.552 6.552 14 N -0.684 5.684 15 C 0.136 3.864 16 H 0.076 0.924 17 C 0.159 3.841 18 N -0.626 5.626 19 C -0.238 4.238 20 H 0.088 0.912 21 C -0.073 4.073 22 N -0.950 5.950 23 Si 0.984 3.016 24 H -0.261 1.261 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.135 3.865 28 C -0.095 4.095 29 H 0.091 0.909 30 C -0.128 4.128 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.182 0.818 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.139 0.861 39 H 0.414 0.586 40 H -0.015 1.015 41 H 0.064 0.936 42 H 0.244 0.756 43 H 0.036 0.964 44 H 0.034 0.966 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.401 19.779 -12.547 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.083 4.083 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.126 4.126 9 C -0.034 4.034 10 N -0.168 5.168 11 C -0.057 4.057 12 C 0.344 3.656 13 O -0.430 6.430 14 N -0.334 5.334 15 C 0.030 3.970 16 H 0.094 0.906 17 C 0.033 3.967 18 N -0.353 5.353 19 C -0.367 4.367 20 H 0.106 0.894 21 C -0.265 4.265 22 N -0.600 5.600 23 Si 0.812 3.188 24 H -0.185 1.185 25 H -0.219 1.219 26 H -0.220 1.220 27 C 0.010 3.990 28 C -0.114 4.114 29 H 0.109 0.891 30 C -0.186 4.186 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.199 0.801 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.179 0.821 38 H 0.157 0.843 39 H 0.251 0.749 40 H 0.003 0.997 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.956 18.920 -12.309 26.026 hybrid contribution -0.655 -0.228 1.215 1.399 sum 12.300 18.692 -11.094 24.975 Atomic orbital electron populations 1.20960 0.88731 1.03879 1.03041 1.20666 0.98843 0.92320 0.99049 1.21739 0.92485 0.98785 0.95256 1.19291 0.94702 0.95096 1.00640 1.21374 0.94597 0.97151 0.99077 1.21483 0.94637 0.99135 0.96625 1.21354 1.02031 0.91397 0.96620 1.21077 0.90215 1.00931 1.00374 1.19336 0.95287 0.88024 1.00713 1.67718 1.06247 1.32214 1.10584 1.21045 0.90044 0.93443 1.01129 1.18358 0.86705 0.83908 0.76605 1.90742 1.14517 1.87052 1.50665 1.45614 1.11346 1.04609 1.71873 1.22280 0.95107 0.82386 0.97273 0.90639 1.21859 0.98680 0.84052 0.92141 1.44720 1.66030 1.04359 1.20142 1.19550 1.27910 0.91092 0.98117 0.89395 1.25761 1.02615 0.97772 1.00339 1.70140 1.51552 1.12649 1.25647 0.84923 0.77278 0.78360 0.78248 1.18488 1.21949 1.22006 1.21588 0.95486 0.95445 0.86513 1.22379 0.99519 0.92857 0.96680 0.89067 1.21687 1.02000 1.02786 0.92089 0.91875 0.88965 0.90726 0.80052 0.81913 0.81707 0.82084 0.84309 0.74929 0.99733 0.91748 0.94641 0.94639 0.94847 0.91755 0.90137 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.96 8.68 71.24 0.62 -2.34 16 2 C -0.11 -2.94 5.89 -19.77 -0.12 -3.06 16 3 C -0.06 -1.16 9.50 22.48 0.21 -0.95 16 4 C -0.10 -1.96 5.75 -21.22 -0.12 -2.09 16 5 C -0.10 -1.30 9.77 22.31 0.22 -1.09 16 6 C -0.10 -0.99 9.95 22.07 0.22 -0.77 16 7 C -0.09 -1.15 9.94 22.04 0.22 -0.93 16 8 C -0.11 -2.07 9.99 22.38 0.22 -1.85 16 9 C 0.09 2.30 6.61 40.49 0.27 2.57 16 10 N -0.46 -14.05 9.48 -177.77 -1.69 -15.74 16 11 C 0.10 3.19 6.75 42.29 0.29 3.47 16 12 C 0.56 21.98 7.75 86.91 0.67 22.65 16 13 O -0.55 -24.91 12.91 -3.72 -0.05 -24.96 16 14 N -0.68 -25.64 5.20 -438.44 -2.28 -27.92 16 15 C 0.14 5.72 2.81 46.38 0.13 5.85 16 16 H 0.08 3.46 7.54 -2.39 -0.02 3.44 16 17 C 0.16 8.66 5.58 86.85 0.48 9.15 16 18 N -0.63 -34.16 3.40 -691.86 -2.35 -36.51 16 19 C -0.24 -13.95 10.27 84.03 0.86 -13.08 16 20 H 0.09 4.86 7.83 -2.91 -0.02 4.83 16 21 C -0.07 -4.36 5.49 84.86 0.47 -3.89 16 22 N -0.95 -61.02 10.09 21.65 0.22 -60.80 16 23 Si 0.98 47.91 29.55 68.60 2.03 49.94 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 27 C 0.13 5.67 6.84 86.73 0.59 6.26 16 28 C -0.09 -3.28 3.19 -9.61 -0.03 -3.31 16 29 H 0.09 2.86 7.99 -2.39 -0.02 2.85 16 30 C -0.13 -3.40 9.16 71.98 0.66 -2.74 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.73 8.04 -2.38 -0.02 1.71 16 33 H 0.07 2.43 5.80 -2.39 -0.01 2.42 16 34 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 37 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.41 13.67 7.85 -92.71 -0.73 12.94 16 40 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H 0.06 4.14 5.88 -2.39 -0.01 4.13 16 42 H 0.24 15.27 8.31 -92.71 -0.77 14.49 16 43 H 0.04 1.45 7.76 -2.39 -0.02 1.43 16 44 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.08 1.74 8.14 -2.38 -0.02 1.73 16 47 H 0.05 1.44 8.06 -2.39 -0.02 1.42 16 Total: -1.00 -80.17 381.93 2.01 -78.16 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.26 Total: 23.97 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 5.87 Total: 13.86 kcal Atomic # 7 Polarization: -134.88 SS G_CDS: -6.10 Total: -140.98 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.05 Total: -24.96 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -80.17 2.01 -78.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080158355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.688 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds