Wall clock time and date at job start Tue Mar 31 2020 22:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39309 * 119.05850 * 2 1 4 4 C 1.38853 * 119.58035 * 179.97438 * 3 2 1 5 5 C 1.47913 * 121.11208 * 179.97438 * 4 3 2 6 6 O 1.21543 * 119.99496 * 174.14782 * 5 4 3 7 7 N 1.34768 * 119.99644 * 354.14775 * 5 4 3 8 8 C 1.46510 * 119.99519 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.88444 * 31.12117 * 8 7 5 10 10 C 1.54908 * 111.00109 * 267.19681 * 8 7 5 11 11 N 1.47433 * 104.83192 * 204.91780 * 10 8 7 12 12 C 1.36935 * 125.65160 * 204.15390 * 11 10 8 13 13 H 1.07992 * 120.00291 * 179.97438 * 12 11 10 14 14 C 1.38819 * 119.99566 * 359.96991 * 12 11 10 15 15 N 1.31614 * 120.00243 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99637 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47378 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47337 * 120.00345 * 16 14 12 19 19 H 1.48506 * 109.46936 * 240.00391 * 16 14 12 20 20 C 1.47020 * 108.70100 * 24.12939 * 11 10 8 21 21 C 1.54325 * 107.27377 * 358.94075 * 20 11 10 22 22 H 1.08997 * 110.87342 * 96.23940 * 21 20 11 23 23 C 1.52994 * 110.72403 * 219.44614 * 21 20 11 24 24 C 1.41824 * 117.77713 * 0.02562 * 4 3 2 25 25 C 1.40102 * 121.37261 * 180.02562 * 24 4 3 26 26 C 1.36249 * 119.64084 * 179.97438 * 25 24 4 27 27 C 1.39345 * 120.83805 * 0.02562 * 26 25 24 28 28 C 1.36065 * 121.04698 * 359.97438 * 27 26 25 29 29 C 1.40699 * 119.74385 * 0.02562 * 28 27 26 30 30 N 1.30969 * 119.05908 * 179.73152 * 2 1 3 31 31 H 1.09007 * 109.47394 * 90.00096 * 1 2 3 32 32 H 1.09002 * 109.47637 * 329.99777 * 1 2 3 33 33 H 1.09004 * 109.47076 * 209.99548 * 1 2 3 34 34 H 1.08006 * 120.20910 * 359.97438 * 3 2 1 35 35 H 0.96995 * 120.00824 * 0.02562 * 7 5 4 36 36 H 1.08997 * 110.36988 * 323.75225 * 10 8 7 37 37 H 1.08995 * 110.36932 * 86.08030 * 10 8 7 38 38 H 0.96999 * 119.99813 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.88345 * 239.52883 * 20 11 10 40 40 H 1.08991 * 109.88291 * 118.35953 * 20 11 10 41 41 H 1.09001 * 109.47489 * 173.52186 * 23 21 20 42 42 H 1.08996 * 109.47001 * 293.52107 * 23 21 20 43 43 H 1.08999 * 109.47549 * 53.52094 * 23 21 20 44 44 H 1.07993 * 120.17757 * 0.02562 * 25 24 4 45 45 H 1.08000 * 119.58208 * 180.02562 * 26 25 24 46 46 H 1.07997 * 119.47606 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.12886 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2177 0.0000 4 6 3.5721 1.2304 0.0005 5 6 4.3248 2.5037 0.0000 6 8 5.5354 2.4939 0.1078 7 7 3.6682 3.6744 -0.1201 8 6 4.4139 4.9356 -0.1212 9 1 5.4044 4.8010 -0.5557 10 6 4.5091 5.5255 1.3080 11 7 4.6955 6.9741 1.1068 12 6 5.2783 7.8352 1.9977 13 1 5.3685 8.8837 1.7553 14 6 5.7533 7.3603 3.2126 15 7 5.6438 6.0824 3.5079 16 14 6.5478 8.5351 4.4284 17 1 6.5485 9.9079 3.8620 18 1 5.7808 8.5252 5.6999 19 1 7.9453 8.1064 4.6899 20 6 4.1523 7.3409 -0.2093 21 6 3.6265 6.0466 -0.8649 22 1 2.5547 5.9356 -0.7004 23 6 3.9473 6.0284 -2.3607 24 6 4.2444 -0.0184 0.0005 25 6 5.6435 -0.0935 0.0016 26 6 6.2528 -1.3121 0.0020 27 6 5.5022 -2.4861 0.0009 28 6 4.1420 -2.4493 -0.0001 29 6 3.4772 -1.2093 -0.0006 30 7 2.1431 -1.1448 0.0054 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 0.8900 0.5139 33 1 -0.3633 -0.8901 0.5138 34 1 1.6317 2.1461 -0.0004 35 1 2.7021 3.6823 -0.2057 36 1 3.5885 5.3346 1.8594 37 1 5.3635 5.1030 1.8367 38 1 5.9760 5.7506 4.3567 39 1 4.9383 7.7761 -0.8265 40 1 3.3362 8.0530 -0.0881 41 1 3.6715 5.0607 -2.7798 42 1 3.3844 6.8154 -2.8626 43 1 5.0145 6.1962 -2.5056 44 1 6.2356 0.8096 0.0029 45 1 7.3313 -1.3689 0.0033 46 1 6.0080 -3.4403 0.0009 47 1 3.5749 -3.3685 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080890263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:31 Heat of formation + Delta-G solvation = 49.405235 kcal Electronic energy + Delta-G solvation = -29142.455082 eV Core-core repulsion = 25290.829683 eV Total energy + Delta-G solvation = -3851.625400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19991 -39.40634 -37.61065 -37.45246 -34.14387 -33.49868 -32.69385 -32.14889 -30.41279 -30.15271 -28.08874 -27.68290 -25.71072 -24.78367 -23.74370 -22.83258 -22.50067 -20.68775 -20.24338 -19.58766 -18.11242 -17.44998 -17.34847 -16.91712 -15.89368 -15.40696 -15.16064 -14.93229 -14.83596 -14.68442 -14.28530 -13.83711 -13.74488 -13.44445 -13.22202 -13.17128 -12.96607 -12.92926 -12.55287 -12.46813 -12.31427 -11.76998 -11.67689 -11.48596 -11.44609 -11.27991 -11.13602 -10.83826 -10.73057 -10.53642 -10.38926 -10.22474 -10.00931 -9.82444 -9.79213 -9.22447 -8.81121 -8.68589 -8.62644 -8.28110 -6.87358 -5.66324 -3.09956 0.03077 0.67215 1.68292 2.68770 3.17502 3.23315 3.39682 3.44721 3.47714 3.96844 4.03915 4.36034 4.47080 4.52578 4.63943 4.74878 4.96354 5.03033 5.10947 5.18689 5.24693 5.25769 5.35319 5.37911 5.38008 5.50234 5.57231 5.64502 5.68974 5.75060 5.89766 5.94563 5.97412 6.04306 6.10084 6.16222 6.24139 6.32019 6.39181 6.44664 6.49312 6.61987 6.68545 6.82451 6.88602 7.37076 7.59131 7.68975 7.74891 7.85489 8.32102 8.37707 9.18574 9.79962 10.42527 11.36823 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.003050 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.210145 B = 9179.410289 C = 9992.413806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.153 3.847 3 C -0.140 4.140 4 C -0.057 4.057 5 C 0.557 3.443 6 O -0.519 6.519 7 N -0.700 5.700 8 C 0.117 3.883 9 H 0.096 0.904 10 C 0.149 3.851 11 N -0.603 5.603 12 C -0.226 4.226 13 H 0.080 0.920 14 C -0.009 4.009 15 N -0.918 5.918 16 Si 0.915 3.085 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.141 3.859 21 C -0.111 4.111 22 H 0.074 0.926 23 C -0.138 4.138 24 C -0.072 4.072 25 C -0.093 4.093 26 C -0.125 4.125 27 C -0.095 4.095 28 C -0.105 4.105 29 C 0.130 3.870 30 N -0.465 5.465 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.395 0.605 36 H 0.014 0.986 37 H 0.113 0.887 38 H 0.252 0.748 39 H 0.028 0.972 40 H 0.024 0.976 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.171 0.829 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.270 -14.304 -10.990 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.000 4.000 3 C -0.161 4.161 4 C -0.068 4.068 5 C 0.343 3.657 6 O -0.396 6.396 7 N -0.349 5.349 8 C 0.013 3.987 9 H 0.114 0.886 10 C 0.023 3.977 11 N -0.329 5.329 12 C -0.354 4.354 13 H 0.098 0.902 14 C -0.205 4.205 15 N -0.566 5.566 16 Si 0.745 3.255 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.217 1.217 20 C 0.015 3.985 21 C -0.131 4.131 22 H 0.092 0.908 23 C -0.195 4.195 24 C -0.075 4.075 25 C -0.111 4.111 26 C -0.143 4.143 27 C -0.115 4.115 28 C -0.124 4.124 29 C 0.008 3.992 30 N -0.175 5.175 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.160 0.840 35 H 0.230 0.770 36 H 0.032 0.968 37 H 0.130 0.870 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.188 0.812 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.672 -15.089 -10.694 20.023 hybrid contribution 0.214 1.344 0.710 1.535 sum -7.458 -13.745 -9.984 18.553 Atomic orbital electron populations 1.20794 0.88178 1.03961 1.03389 1.21378 0.97228 0.87675 0.93676 1.22241 0.93590 0.99779 1.00470 1.20493 0.93667 0.93685 0.98918 1.17951 0.87233 0.83153 0.77347 1.90616 1.13518 1.86316 1.49166 1.45797 1.10409 1.05882 1.72851 1.22828 0.95011 0.80289 1.00611 0.88554 1.22235 1.02134 0.83727 0.89636 1.44390 1.69155 1.04470 1.14882 1.19109 1.30826 0.90193 0.95320 0.90233 1.24820 1.01379 0.96381 0.97940 1.69795 1.51596 1.11885 1.23337 0.85998 0.78830 0.79649 0.81004 1.20486 1.21753 1.21658 1.21343 0.95819 0.93433 0.87905 1.22441 0.99423 0.96505 0.94726 0.90791 1.21748 1.01836 1.00932 0.95034 1.18683 0.95214 0.92027 1.01574 1.22144 0.93483 1.00649 0.94810 1.21097 1.00579 0.92240 1.00407 1.20980 0.93733 0.98829 0.97970 1.20715 0.94197 0.95935 1.01513 1.18823 0.88739 0.92972 0.98623 1.67615 1.08853 1.28805 1.12233 0.90030 0.90212 0.90164 0.84043 0.77035 0.96825 0.86964 0.93675 0.95364 0.95775 0.93133 0.92773 0.92389 0.81181 0.85382 0.85392 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.14 36.01 0.37 -0.44 16 2 C 0.15 1.75 6.78 -82.56 -0.56 1.20 16 3 C -0.14 -1.64 9.20 -38.96 -0.36 -1.99 16 4 C -0.06 -0.83 5.94 -104.34 -0.62 -1.45 16 5 C 0.56 9.39 7.75 -12.30 -0.10 9.30 16 6 O -0.52 -10.42 13.17 5.33 0.07 -10.35 16 7 N -0.70 -10.80 5.15 -52.64 -0.27 -11.07 16 8 C 0.12 2.19 2.87 -65.77 -0.19 2.00 16 9 H 0.10 1.98 7.44 -51.93 -0.39 1.60 16 10 C 0.15 3.59 5.58 -2.52 -0.01 3.58 16 11 N -0.60 -15.24 3.39 -170.07 -0.58 -15.81 16 12 C -0.23 -6.28 10.27 -15.06 -0.15 -6.43 16 13 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 14 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 15 N -0.92 -27.16 10.09 55.49 0.56 -26.60 16 16 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 C 0.14 2.83 6.84 -3.06 -0.02 2.81 16 21 C -0.11 -1.78 3.20 -88.79 -0.28 -2.07 16 22 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 23 C -0.14 -1.81 9.16 37.15 0.34 -1.47 16 24 C -0.07 -1.09 5.76 -106.52 -0.61 -1.70 16 25 C -0.09 -1.37 9.25 -39.60 -0.37 -1.73 16 26 C -0.13 -1.48 9.96 -39.89 -0.40 -1.88 16 27 C -0.10 -0.99 9.94 -39.95 -0.40 -1.39 16 28 C -0.10 -1.22 9.98 -39.43 -0.39 -1.62 16 29 C 0.13 1.82 6.61 -84.87 -0.56 1.26 16 30 N -0.47 -6.23 10.19 -7.25 -0.07 -6.30 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.14 1.22 6.55 -52.48 -0.34 0.88 16 35 H 0.39 4.77 6.74 -40.82 -0.28 4.50 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.11 3.21 5.87 -51.93 -0.30 2.90 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.03 0.56 7.77 -51.93 -0.40 0.16 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.80 8.06 -51.93 -0.42 0.39 16 44 H 0.17 2.81 4.98 -52.49 -0.26 2.55 16 45 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -33.46 380.24 -10.58 -44.04 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.58 Total: 5.61 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -4.41 Total: -2.40 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.36 Total: -59.78 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.46 -10.58 -44.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080890263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.447 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds