Wall clock time and date at job start Tue Mar 31 2020 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34660 * 125.80071 * 2 1 4 4 H 0.97006 * 124.85266 * 359.97020 * 3 2 1 5 5 C 1.36457 * 110.29885 * 179.82425 * 3 2 1 6 6 C 1.34486 * 108.85411 * 0.44881 * 5 3 2 7 7 C 1.36767 * 125.80388 * 180.31554 * 2 1 3 8 8 C 1.47263 * 126.94039 * 359.97261 * 7 2 1 9 9 O 1.21620 * 119.99992 * 349.34663 * 8 7 2 10 10 N 1.34786 * 119.99687 * 169.34349 * 8 7 2 11 11 C 1.48135 * 127.83870 * 359.97438 * 10 8 7 12 12 C 1.54391 * 104.61832 * 219.58146 * 11 10 8 13 13 H 1.09001 * 110.34008 * 95.11530 * 12 11 10 14 14 C 1.50697 * 110.34456 * 217.26542 * 12 11 10 15 15 C 1.38236 * 119.99943 * 58.27299 * 14 12 11 16 16 C 1.38234 * 119.99500 * 179.80842 * 15 14 12 17 17 C 1.38234 * 120.00459 * 0.39995 * 16 15 14 18 18 C 1.38235 * 119.99916 * 359.85803 * 17 16 15 19 19 C 1.38233 * 119.99757 * 359.94904 * 18 17 16 20 20 C 1.54282 * 104.96069 * 336.13816 * 12 11 10 21 21 H 1.09006 * 110.34315 * 241.12833 * 20 12 11 22 22 N 1.46500 * 110.34212 * 118.97428 * 20 12 11 23 23 C 1.36935 * 119.99837 * 155.00249 * 22 20 12 24 24 H 1.08001 * 120.00048 * 359.97438 * 23 22 20 25 25 C 1.38818 * 119.99944 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00008 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99927 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46785 * 60.00173 * 27 25 23 29 29 H 1.48496 * 109.46914 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47114 * 300.00093 * 27 25 23 31 31 C 1.48149 * 127.83401 * 179.67600 * 10 8 7 32 32 H 1.08998 * 109.46956 * 269.68652 * 1 2 3 33 33 H 1.09003 * 109.47207 * 149.68547 * 1 2 3 34 34 H 1.09001 * 109.46974 * 29.68670 * 1 2 3 35 35 H 1.07998 * 125.57201 * 180.20495 * 5 3 2 36 36 H 1.07997 * 126.83196 * 179.73637 * 6 5 3 37 37 H 1.08998 * 110.41299 * 338.37078 * 11 10 8 38 38 H 1.09004 * 110.40937 * 100.68222 * 11 10 8 39 39 H 1.07994 * 120.00337 * 359.97438 * 15 14 12 40 40 H 1.08001 * 119.99791 * 180.23355 * 16 15 14 41 41 H 1.08000 * 120.00484 * 179.83200 * 17 16 15 42 42 H 1.08003 * 120.00062 * 179.97438 * 18 17 16 43 43 H 1.08008 * 119.99759 * 179.97438 * 19 18 17 44 44 H 0.96994 * 119.99878 * 334.99367 * 22 20 12 45 45 H 0.96997 * 119.99895 * 179.97438 * 26 25 23 46 46 H 1.08996 * 110.40283 * 259.19961 * 31 10 8 47 47 H 1.09000 * 110.40793 * 21.63300 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 -0.0004 5 6 3.6096 0.7275 0.0039 6 6 3.6883 -0.6151 -0.0034 7 6 2.3071 -1.1092 -0.0061 8 6 1.8702 -2.5155 -0.0133 9 8 0.7014 -2.7902 0.1804 10 7 2.7658 -3.4982 -0.2346 11 6 4.2189 -3.3631 -0.4887 12 6 4.5238 -4.4153 -1.5767 13 1 4.4957 -3.9571 -2.5653 14 6 5.8695 -5.0477 -1.3315 15 6 6.1210 -5.6964 -0.1370 16 6 7.3541 -6.2799 0.0863 17 6 8.3384 -6.2076 -0.8816 18 6 8.0887 -5.5543 -2.0739 19 6 6.8543 -4.9742 -2.2988 20 6 3.4036 -5.4671 -1.4384 21 1 3.8268 -6.4413 -1.1932 22 7 2.6254 -5.5481 -2.6770 23 6 1.9519 -6.6990 -2.9884 24 1 1.9947 -7.5471 -2.3211 25 6 1.2140 -6.7756 -4.1617 26 7 1.1615 -5.7418 -4.9747 27 14 0.2958 -8.3458 -4.5868 28 1 -0.6938 -8.6446 -3.5206 29 1 -0.4090 -8.1718 -5.8823 30 1 1.2606 -9.4695 -4.6957 31 6 2.5212 -4.9589 -0.2730 32 1 -0.3633 -0.0056 1.0276 33 1 -0.3634 -0.8872 -0.5187 34 1 -0.3633 0.8928 -0.5090 35 1 4.4498 1.4060 0.0079 36 1 4.5891 -1.2108 -0.0067 37 1 4.4497 -2.3620 -0.8528 38 1 4.7848 -3.5766 0.4181 39 1 5.3533 -5.7496 0.6207 40 1 7.5494 -6.7900 1.0180 41 1 9.3028 -6.6611 -0.7061 42 1 8.8579 -5.4974 -2.8299 43 1 6.6593 -4.4634 -3.2302 44 1 2.5872 -4.7865 -3.2764 45 1 0.6462 -5.7955 -5.7948 46 1 2.8258 -5.4200 0.6664 47 1 1.4696 -5.1630 -0.4743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081105280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:19 Heat of formation + Delta-G solvation = 43.814474 kcal Electronic energy + Delta-G solvation = -29437.391405 eV Core-core repulsion = 25585.523572 eV Total energy + Delta-G solvation = -3851.867833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.20880 -41.03799 -39.70912 -38.30602 -35.83818 -33.81385 -32.75411 -32.45590 -31.99693 -31.66482 -29.55071 -28.88638 -27.39970 -26.02285 -24.88638 -23.56962 -22.98541 -22.11569 -21.83707 -20.75584 -19.70574 -19.06048 -18.45657 -17.76948 -17.27091 -16.76075 -16.53556 -16.29827 -15.94843 -15.73990 -15.53891 -15.21571 -15.09055 -14.87754 -14.41886 -14.22223 -14.11947 -14.06426 -13.70696 -13.58577 -13.45712 -13.42162 -13.20750 -13.03337 -12.78894 -12.58319 -12.48795 -12.39829 -12.23508 -11.94229 -11.72913 -11.70851 -11.55137 -11.03356 -10.84060 -9.87044 -9.70562 -9.64486 -9.52130 -9.09608 -8.89280 -7.95334 -5.24033 0.55221 0.62976 0.78491 1.44352 1.48411 1.53644 1.57198 2.03164 2.45644 2.54111 2.59227 2.97343 3.34555 3.65261 3.73330 3.85678 3.93005 4.08698 4.11426 4.20171 4.27206 4.28497 4.34975 4.38744 4.40656 4.49305 4.58513 4.66690 4.68145 4.74637 4.76751 4.82196 4.90767 4.98758 5.03170 5.10280 5.12193 5.24209 5.28217 5.31320 5.47006 5.52104 5.71880 5.74020 5.80046 5.86211 6.01513 6.24182 6.26019 6.68622 6.77107 7.31569 7.34370 8.05627 8.28796 9.28037 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006829 B = 0.004840 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4099.190973 B = 5784.012109 C = 8957.440445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 N -0.535 5.535 4 H 0.434 0.566 5 C 0.005 3.995 6 C -0.200 4.200 7 C -0.264 4.264 8 C 0.593 3.407 9 O -0.601 6.601 10 N -0.610 5.610 11 C 0.106 3.894 12 C -0.063 4.063 13 H 0.072 0.928 14 C -0.070 4.070 15 C -0.123 4.123 16 C -0.121 4.121 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.128 4.128 20 C 0.177 3.823 21 H 0.069 0.931 22 N -0.724 5.724 23 C -0.242 4.242 24 H 0.077 0.923 25 C -0.073 4.073 26 N -0.970 5.970 27 Si 0.971 3.029 28 H -0.282 1.282 29 H -0.296 1.296 30 H -0.273 1.273 31 C 0.085 3.915 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.214 0.786 36 H 0.167 0.833 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.116 0.884 44 H 0.370 0.630 45 H 0.250 0.750 46 H 0.082 0.918 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.175 13.523 13.118 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.026 4.026 3 N -0.133 5.133 4 H 0.274 0.726 5 C -0.123 4.123 6 C -0.223 4.223 7 C -0.274 4.274 8 C 0.386 3.614 9 O -0.485 6.485 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.083 4.083 13 H 0.090 0.910 14 C -0.071 4.071 15 C -0.141 4.141 16 C -0.138 4.138 17 C -0.147 4.147 18 C -0.141 4.141 19 C -0.146 4.146 20 C 0.066 3.934 21 H 0.087 0.913 22 N -0.362 5.362 23 C -0.373 4.373 24 H 0.095 0.905 25 C -0.265 4.265 26 N -0.620 5.620 27 Si 0.799 3.201 28 H -0.208 1.208 29 H -0.222 1.222 30 H -0.199 1.199 31 C -0.041 4.041 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.231 0.769 36 H 0.184 0.816 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.144 0.856 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.134 0.866 44 H 0.202 0.798 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.422 13.418 13.230 23.729 hybrid contribution -1.311 -0.493 -0.961 1.699 sum 13.111 12.925 12.269 22.124 Atomic orbital electron populations 1.20448 0.86969 1.03593 1.03598 1.20359 0.94139 0.86283 1.01814 1.41556 1.06028 1.08423 1.57254 0.72585 1.22402 0.86354 0.96118 1.07391 1.22677 0.95070 0.95013 1.09500 1.20155 0.95754 0.90570 1.20908 1.17609 0.83602 0.84876 0.75297 1.90690 1.19106 1.84722 1.53959 1.48654 1.09624 1.06090 1.69769 1.23066 0.79727 1.00622 0.98132 1.21293 0.91983 0.95518 0.99504 0.90988 1.19590 0.93583 0.98856 0.95070 1.21143 0.97970 0.98246 0.96741 1.21402 0.92953 0.99202 1.00289 1.21452 1.00243 0.99320 0.93641 1.21369 0.96717 0.97846 0.98214 1.21216 0.93911 1.00746 0.98748 1.21445 0.89569 0.96709 0.85643 0.91283 1.42583 1.57638 1.14486 1.21535 1.19594 1.21914 0.92768 1.03050 0.90531 1.25537 1.02486 1.00688 0.97806 1.69823 1.46932 1.31645 1.13600 0.85256 0.78538 0.79588 0.76675 1.20838 1.22185 1.19881 1.23278 1.00734 0.80418 0.99664 0.89851 0.92230 0.88782 0.76908 0.81588 0.87244 0.88721 0.85573 0.83905 0.83791 0.84413 0.86577 0.79817 0.94132 0.89955 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.22 9.79 71.23 0.70 -1.52 16 2 C 0.09 2.45 7.17 41.78 0.30 2.75 16 3 N -0.54 -8.80 5.90 -182.72 -1.08 -9.88 16 4 H 0.43 3.59 8.96 -92.70 -0.83 2.76 16 5 C 0.01 0.08 11.89 83.11 0.99 1.07 16 6 C -0.20 -4.58 9.35 23.62 0.22 -4.36 16 7 C -0.26 -8.43 6.20 -19.04 -0.12 -8.55 16 8 C 0.59 24.24 7.89 86.61 0.68 24.92 16 9 O -0.60 -29.32 15.26 -4.09 -0.06 -29.39 16 10 N -0.61 -22.75 3.31 -811.26 -2.69 -25.44 16 11 C 0.11 3.02 5.45 86.54 0.47 3.49 16 12 C -0.06 -2.06 3.05 -10.63 -0.03 -2.09 16 13 H 0.07 2.65 7.46 -2.39 -0.02 2.63 16 14 C -0.07 -1.96 4.75 -19.87 -0.09 -2.06 16 15 C -0.12 -2.97 8.08 22.27 0.18 -2.79 16 16 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 17 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 18 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 19 C -0.13 -3.40 9.68 22.27 0.22 -3.18 16 20 C 0.18 7.21 3.11 46.03 0.14 7.36 16 21 H 0.07 2.80 7.23 -2.38 -0.02 2.78 16 22 N -0.72 -38.27 5.14 -318.03 -1.63 -39.91 16 23 C -0.24 -13.96 9.96 84.04 0.84 -13.12 16 24 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 25 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 26 N -0.97 -61.99 13.06 21.65 0.28 -61.70 16 27 Si 0.97 48.19 29.55 68.60 2.03 50.22 16 28 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 29 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 30 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 31 C 0.08 3.43 6.79 86.66 0.59 4.02 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 2.01 6.74 -2.39 -0.02 1.99 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.21 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.17 3.25 5.25 -2.91 -0.02 3.23 16 37 H 0.11 2.78 4.40 -2.39 -0.01 2.77 16 38 H 0.09 2.22 6.98 -2.39 -0.02 2.20 16 39 H 0.13 2.85 7.79 -2.91 -0.02 2.82 16 40 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.12 3.09 7.97 -2.91 -0.02 3.07 16 44 H 0.37 21.41 7.56 -92.71 -0.70 20.71 16 45 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 47 H 0.04 2.12 7.80 -2.39 -0.02 2.10 16 Total: -1.00 -82.73 383.27 2.55 -80.17 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: -0.51 Total: 40.81 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 6.22 Total: -4.89 kcal Atomic # 7 Polarization: -131.81 SS G_CDS: -5.12 Total: -136.92 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.06 Total: -29.39 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -82.73 2.55 -80.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081105280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.987 kcal (2) G-P(sol) polarization free energy of solvation -82.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds