Wall clock time and date at job start Tue Mar 31 2020 22:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39838 * 126.45514 * 2 1 4 4 C 1.35455 * 107.86499 * 179.74506 * 3 2 1 5 5 N 1.35537 * 108.86840 * 0.25921 * 4 3 2 6 6 H 0.97006 * 125.67144 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64693 * 0.02562 * 5 4 3 8 8 C 1.46675 * 126.23049 * 180.02562 * 7 5 4 9 9 O 1.21692 * 119.99627 * 170.83885 * 8 7 5 10 10 N 1.34777 * 120.00458 * 350.83399 * 8 7 5 11 11 C 1.48145 * 127.83255 * 358.88997 * 10 8 7 12 12 C 1.54390 * 104.61418 * 219.58066 * 11 10 8 13 13 H 1.09001 * 110.33886 * 95.11587 * 12 11 10 14 14 C 1.50705 * 110.34225 * 217.26347 * 12 11 10 15 15 C 1.38234 * 119.99888 * 58.27587 * 14 12 11 16 16 C 1.38234 * 119.99838 * 179.81013 * 15 14 12 17 17 C 1.38232 * 119.99899 * 0.39332 * 16 15 14 18 18 C 1.38237 * 120.00316 * 359.86217 * 17 16 15 19 19 C 1.38233 * 119.99606 * 359.95316 * 18 17 16 20 20 C 1.54280 * 104.96110 * 336.13631 * 12 11 10 21 21 H 1.09006 * 110.34148 * 241.12959 * 20 12 11 22 22 N 1.46502 * 110.34270 * 118.97707 * 20 12 11 23 23 C 1.36934 * 120.00124 * 154.99906 * 22 20 12 24 24 H 1.08006 * 119.99930 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00321 * 179.97438 * 23 22 20 26 26 N 1.31614 * 120.00322 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99609 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47283 * 90.00168 * 27 25 23 29 29 H 1.48503 * 109.47091 * 210.00334 * 27 25 23 30 30 H 1.48503 * 109.47377 * 330.00038 * 27 25 23 31 31 C 1.48140 * 127.84028 * 178.56455 * 10 8 7 32 32 H 1.09001 * 109.47190 * 90.02821 * 1 2 3 33 33 H 1.09006 * 109.46687 * 210.02062 * 1 2 3 34 34 H 1.08993 * 109.47006 * 330.02240 * 1 2 3 35 35 H 1.07998 * 126.06449 * 0.02562 * 3 2 1 36 36 H 1.07999 * 125.56544 * 180.24617 * 4 3 2 37 37 H 1.08996 * 110.41066 * 338.36523 * 11 10 8 38 38 H 1.09000 * 110.40872 * 100.68302 * 11 10 8 39 39 H 1.08000 * 120.00097 * 359.97438 * 15 14 12 40 40 H 1.08000 * 120.00141 * 180.23116 * 16 15 14 41 41 H 1.08002 * 119.99578 * 179.83475 * 17 16 15 42 42 H 1.07999 * 120.00174 * 179.97438 * 18 17 16 43 43 H 1.08005 * 119.99789 * 180.02562 * 19 18 17 44 44 H 0.96993 * 119.99788 * 334.99390 * 22 20 12 45 45 H 0.97000 * 120.00124 * 180.02562 * 26 25 23 46 46 H 1.08997 * 110.41171 * 259.20192 * 31 10 8 47 47 H 1.09001 * 110.40762 * 21.63549 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0057 5 7 3.6284 -0.6624 0.0035 6 1 4.4192 -1.2243 0.0069 7 6 2.3263 -1.1089 -0.0043 8 6 1.8900 -2.5092 -0.0085 9 8 0.7148 -2.7808 0.1524 10 7 2.7907 -3.4952 -0.1906 11 6 4.2478 -3.3633 -0.4231 12 6 4.5727 -4.4411 -1.4798 13 1 4.5607 -4.0072 -2.4796 14 6 5.9152 -5.0646 -1.1964 15 6 6.1474 -5.6835 0.0176 16 6 7.3774 -6.2589 0.2760 17 6 8.3779 -6.2082 -0.6765 18 6 8.1474 -5.5847 -1.8886 19 6 6.9161 -5.0127 -2.1484 20 6 3.4521 -5.4915 -1.3349 21 1 3.8726 -6.4586 -1.0588 22 7 2.6952 -5.6043 -2.5842 23 6 2.0289 -6.7638 -2.8788 24 1 2.0618 -7.5953 -2.1903 25 6 1.3113 -6.8705 -4.0622 26 7 0.6705 -7.9847 -4.3451 27 14 1.2539 -5.4320 -5.2525 28 1 2.3791 -5.5410 -6.2154 29 1 -0.0339 -5.4523 -5.9917 30 1 1.3707 -4.1590 -4.4967 31 6 2.5493 -4.9568 -0.1970 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3633 -0.8899 0.5142 34 1 -0.3633 0.8901 0.5135 35 1 2.0135 2.1549 0.0004 36 1 4.4972 1.3254 0.0110 37 1 4.4831 -2.3710 -0.8076 38 1 4.7985 -3.5536 0.4981 39 1 5.3669 -5.7199 0.7632 40 1 7.5576 -6.7457 1.2230 41 1 9.3398 -6.6555 -0.4736 42 1 8.9293 -5.5448 -2.6326 43 1 6.7359 -4.5259 -3.0955 44 1 2.6659 -4.8576 -3.2025 45 1 0.1693 -8.0594 -5.1723 46 1 2.8388 -5.3941 0.7585 47 1 1.5015 -5.1680 -0.4107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081112467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:57 Heat of formation + Delta-G solvation = 50.588936 kcal Electronic energy + Delta-G solvation = -29618.223247 eV Core-core repulsion = 25766.649176 eV Total energy + Delta-G solvation = -3851.574071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47415 -41.10507 -39.80585 -38.53808 -36.08073 -34.11361 -33.40235 -33.06676 -31.74248 -31.14179 -29.72618 -29.06079 -27.96673 -25.94446 -24.81261 -23.58730 -22.92326 -22.11277 -21.93378 -21.04967 -20.06461 -19.72813 -18.60978 -17.95788 -17.49256 -16.88398 -16.66036 -16.26946 -16.13203 -15.87935 -15.61041 -15.24297 -14.91048 -14.84753 -14.61250 -14.43911 -14.15222 -14.04413 -13.90270 -13.69680 -13.64497 -13.53890 -13.37762 -13.18465 -13.00415 -12.68374 -12.58037 -12.53926 -12.35753 -12.06103 -11.87346 -11.85026 -11.71905 -11.15869 -11.04678 -10.06940 -9.73893 -9.71356 -9.65424 -9.29338 -9.07794 -8.08122 -5.41440 0.41993 0.49278 0.57523 1.28607 1.33422 1.38481 1.75369 1.82602 2.20007 2.29866 2.41070 2.88586 3.17808 3.34771 3.46627 3.54948 3.78679 3.87326 4.07228 4.15297 4.18419 4.23654 4.24398 4.29753 4.35837 4.38258 4.42188 4.49928 4.65700 4.70943 4.76257 4.83381 4.85496 4.89393 4.97024 5.01444 5.12905 5.17211 5.23956 5.27475 5.42760 5.64693 5.69773 5.70165 5.76881 5.78196 5.96210 6.15660 6.18124 6.43866 6.53954 7.00206 7.03725 7.75409 7.91952 9.13190 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006944 B = 0.005226 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4031.008543 B = 5356.180210 C = 8220.832217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.095 4.095 3 C -0.226 4.226 4 C 0.048 3.952 5 N -0.535 5.535 6 H 0.427 0.573 7 C -0.086 4.086 8 C 0.595 3.405 9 O -0.576 6.576 10 N -0.619 5.619 11 C 0.106 3.894 12 C -0.062 4.062 13 H 0.085 0.915 14 C -0.075 4.075 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.125 4.125 20 C 0.179 3.821 21 H 0.076 0.924 22 N -0.741 5.741 23 C -0.228 4.228 24 H 0.064 0.936 25 C -0.056 4.056 26 N -0.979 5.979 27 Si 0.946 3.054 28 H -0.270 1.270 29 H -0.298 1.298 30 H -0.268 1.268 31 C 0.084 3.916 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.164 0.836 36 H 0.219 0.781 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.123 0.877 44 H 0.362 0.638 45 H 0.258 0.742 46 H 0.090 0.910 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.350 17.670 11.494 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.249 4.249 4 C -0.088 4.088 5 N -0.138 5.138 6 H 0.273 0.727 7 C -0.198 4.198 8 C 0.388 3.612 9 O -0.456 6.456 10 N -0.351 5.351 11 C -0.017 4.017 12 C -0.082 4.082 13 H 0.103 0.897 14 C -0.076 4.076 15 C -0.140 4.140 16 C -0.140 4.140 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.143 4.143 20 C 0.069 3.931 21 H 0.094 0.906 22 N -0.382 5.382 23 C -0.359 4.359 24 H 0.082 0.918 25 C -0.248 4.248 26 N -0.629 5.629 27 Si 0.775 3.225 28 H -0.196 1.196 29 H -0.224 1.224 30 H -0.194 1.194 31 C -0.041 4.041 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.182 0.818 36 H 0.236 0.764 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.141 0.859 44 H 0.195 0.805 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.711 17.211 11.610 27.949 hybrid contribution -0.677 -0.166 -1.178 1.369 sum 18.034 17.045 10.432 26.918 Atomic orbital electron populations 1.20325 0.90095 1.02737 1.01739 1.20276 0.96090 0.92025 1.02000 1.21107 0.92099 0.98907 1.12821 1.22816 1.00537 0.82646 1.02851 1.42747 1.06396 1.08187 1.56485 0.72668 1.19894 0.85701 0.91909 1.22331 1.17160 0.84321 0.83564 0.76192 1.90784 1.18196 1.83545 1.53113 1.48892 1.09024 1.06569 1.70636 1.22918 0.79788 0.99281 0.99698 1.21280 0.92084 0.95020 0.99786 0.89664 1.19515 0.93377 0.99578 0.95101 1.21167 0.97973 0.98247 0.96639 1.21407 0.93015 0.99138 1.00418 1.21474 1.00158 0.99183 0.93708 1.21389 0.97053 0.97881 0.97886 1.21235 0.93572 1.00523 0.98939 1.21443 0.89440 0.97203 0.84983 0.90581 1.42802 1.60270 1.14091 1.21063 1.19021 1.22356 0.91967 1.02586 0.91834 1.25365 1.00004 0.99269 1.00114 1.69852 1.38634 1.27886 1.26514 0.85544 0.77209 0.80149 0.79620 1.19551 1.22447 1.19383 1.23317 1.01277 0.79351 1.00142 0.92342 0.92794 0.89555 0.81823 0.76426 0.88922 0.87324 0.85366 0.84101 0.84008 0.84385 0.85906 0.80530 0.93330 0.89158 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.58 9.92 71.24 0.71 -1.87 16 2 C -0.09 -2.60 6.21 -19.56 -0.12 -2.72 16 3 C -0.23 -4.30 10.76 22.01 0.24 -4.06 16 4 C 0.05 0.68 11.89 83.48 0.99 1.67 16 5 N -0.53 -9.87 5.41 -183.62 -0.99 -10.86 16 6 H 0.43 5.66 5.34 -92.70 -0.49 5.17 16 7 C -0.09 -2.48 6.87 40.35 0.28 -2.21 16 8 C 0.60 21.61 7.87 86.45 0.68 22.29 16 9 O -0.58 -26.07 15.05 -4.32 -0.07 -26.14 16 10 N -0.62 -19.47 3.31 -811.87 -2.69 -22.16 16 11 C 0.11 2.27 5.54 86.53 0.48 2.75 16 12 C -0.06 -1.62 3.05 -10.63 -0.03 -1.65 16 13 H 0.09 2.38 7.46 -2.39 -0.02 2.36 16 14 C -0.08 -1.71 4.75 -19.86 -0.09 -1.80 16 15 C -0.12 -2.47 8.07 22.27 0.18 -2.29 16 16 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 17 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 18 C -0.12 -2.27 10.05 22.27 0.22 -2.04 16 19 C -0.12 -2.69 9.68 22.27 0.22 -2.47 16 20 C 0.18 6.43 3.11 46.04 0.14 6.58 16 21 H 0.08 2.82 7.23 -2.38 -0.02 2.80 16 22 N -0.74 -34.65 4.94 -317.99 -1.57 -36.22 16 23 C -0.23 -13.09 10.44 84.03 0.88 -12.22 16 24 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 25 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 26 N -0.98 -63.79 13.97 21.65 0.30 -63.49 16 27 Si 0.95 47.57 27.73 68.60 1.90 49.47 16 28 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 29 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 30 H -0.27 -12.89 6.52 99.48 0.65 -12.24 16 31 C 0.08 3.01 6.80 86.68 0.59 3.60 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.82 6.36 -2.38 -0.02 1.81 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 37 H 0.09 1.57 4.82 -2.39 -0.01 1.56 16 38 H 0.11 1.74 6.98 -2.39 -0.02 1.72 16 39 H 0.13 2.36 7.79 -2.91 -0.02 2.34 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.12 2.51 7.97 -2.91 -0.02 2.48 16 44 H 0.36 16.85 5.42 -92.71 -0.50 16.34 16 45 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 46 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 47 H 0.05 2.24 7.80 -2.39 -0.02 2.22 16 Total: -1.00 -82.01 380.01 3.11 -78.90 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.05 Total: 33.61 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 6.27 Total: -3.12 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -4.95 Total: -132.73 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.07 Total: -26.14 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.90 Total: 49.47 kcal Total: -82.01 3.11 -78.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081112467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.493 kcal (2) G-P(sol) polarization free energy of solvation -82.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds