Wall clock time and date at job start Tue Mar 31 2020 23:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34477 * 126.82904 * 2 1 4 4 N 1.36457 * 108.85372 * 179.75993 * 3 2 1 5 5 H 0.96994 * 124.85108 * 180.26489 * 4 3 2 6 6 C 1.34651 * 110.29381 * 0.44359 * 4 3 2 7 7 C 1.36772 * 108.40107 * 359.55948 * 6 4 3 8 8 C 1.47266 * 126.94086 * 180.29917 * 7 6 4 9 9 O 1.21628 * 119.99346 * 204.20392 * 8 7 6 10 10 N 1.34768 * 120.00069 * 24.20860 * 8 7 6 11 11 C 1.48120 * 127.03090 * 185.25837 * 10 8 7 12 12 C 1.54605 * 103.42048 * 219.28455 * 11 10 8 13 13 H 1.08997 * 110.72816 * 81.24521 * 12 11 10 14 14 C 1.50701 * 110.83119 * 204.44194 * 12 11 10 15 15 C 1.38238 * 119.99829 * 53.29500 * 14 12 11 16 16 C 1.38233 * 119.99712 * 179.80780 * 15 14 12 17 17 C 1.38229 * 120.00086 * 0.41598 * 16 15 14 18 18 C 1.38231 * 120.00060 * 359.81281 * 17 16 15 19 19 C 1.38229 * 120.00020 * 359.97438 * 18 17 16 20 20 C 1.54611 * 102.91265 * 322.86931 * 12 11 10 21 21 H 1.09005 * 110.32358 * 262.80413 * 20 12 11 22 22 N 1.46503 * 110.33006 * 140.59216 * 20 12 11 23 23 C 1.36926 * 120.00068 * 157.92288 * 22 20 12 24 24 H 1.08009 * 120.00602 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00129 * 180.02562 * 23 22 20 26 26 N 1.31616 * 119.99788 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00500 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47306 * 89.99714 * 27 25 23 29 29 H 1.48500 * 109.47348 * 210.00094 * 27 25 23 30 30 H 1.48501 * 109.46847 * 330.00161 * 27 25 23 31 31 C 1.47487 * 127.03778 * 5.57089 * 10 8 7 32 32 H 1.09005 * 109.47317 * 269.97039 * 1 2 3 33 33 H 1.08995 * 109.47395 * 29.97147 * 1 2 3 34 34 H 1.09005 * 109.47152 * 149.97709 * 1 2 3 35 35 H 1.07998 * 125.57968 * 0.04382 * 3 2 1 36 36 H 1.08004 * 125.79929 * 179.82512 * 6 4 3 37 37 H 1.09004 * 110.66156 * 337.76357 * 11 10 8 38 38 H 1.08996 * 110.66312 * 100.88470 * 11 10 8 39 39 H 1.08006 * 119.99735 * 359.97438 * 15 14 12 40 40 H 1.08003 * 119.99721 * 180.20961 * 16 15 14 41 41 H 1.08008 * 120.00149 * 179.79253 * 17 16 15 42 42 H 1.08005 * 119.99856 * 179.97438 * 18 17 16 43 43 H 1.08006 * 120.00045 * 179.97438 * 19 18 17 44 44 H 0.97003 * 119.99171 * 337.92275 * 22 20 12 45 45 H 0.97002 * 120.00393 * 180.02562 * 26 25 23 46 46 H 1.08996 * 109.91355 * 273.87782 * 31 10 8 47 47 H 1.09005 * 109.90829 * 35.15904 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0764 0.0000 4 7 3.6111 0.6553 0.0054 5 1 4.3839 1.2414 0.0102 6 6 3.6656 -0.6901 -0.0008 7 6 2.3864 -1.1740 -0.0005 8 6 1.9750 -2.5881 0.0000 9 8 0.8826 -2.9037 -0.4317 10 7 2.8090 -3.5323 0.4788 11 6 2.6032 -4.9989 0.4559 12 6 3.1450 -5.4589 1.8289 13 1 2.3997 -5.3045 2.6091 14 6 3.5720 -6.9033 1.7800 15 6 4.4608 -7.3288 0.8105 16 6 4.8556 -8.6528 0.7681 17 6 4.3550 -9.5532 1.6899 18 6 3.4627 -9.1286 2.6564 19 6 3.0713 -7.8037 2.7016 20 6 4.3649 -4.5341 2.0463 21 1 5.2826 -5.0421 1.7498 22 7 4.4434 -4.1164 3.4483 23 6 5.6359 -3.6916 3.9704 24 1 6.5187 -3.6650 3.3487 25 6 5.7104 -3.2963 5.2989 26 7 4.6350 -3.3302 6.0569 27 14 7.3370 -2.7162 6.0110 28 1 7.4631 -1.2482 5.8257 29 1 7.3861 -3.0382 7.4598 30 1 8.4550 -3.4009 5.3135 31 6 4.1102 -3.3164 1.1386 32 1 -0.3634 -0.0005 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3634 -0.8898 -0.5142 35 1 1.9867 2.1059 0.0007 36 1 4.5665 -1.2859 -0.0012 37 1 1.5436 -5.2372 0.3620 38 1 3.1742 -5.4548 -0.3529 39 1 4.8488 -6.6261 0.0878 40 1 5.5526 -8.9846 0.0127 41 1 4.6609 -10.5884 1.6547 42 1 3.0713 -9.8322 3.3764 43 1 2.3737 -7.4721 3.4565 44 1 3.6506 -4.1406 4.0067 45 1 4.6869 -3.0535 6.9852 46 1 4.8983 -3.2405 0.3894 47 1 4.0759 -2.4069 1.7385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081226526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:11 Heat of formation + Delta-G solvation = 55.467586 kcal Electronic energy + Delta-G solvation = -29331.280016 eV Core-core repulsion = 25479.917500 eV Total energy + Delta-G solvation = -3851.362516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.07596 -39.80448 -38.54331 -36.95477 -33.98741 -32.63070 -32.30242 -30.89471 -30.67709 -30.01330 -27.94378 -27.34627 -26.40320 -24.55467 -23.42687 -22.51920 -21.81756 -20.90660 -19.93695 -19.59162 -18.54445 -17.68037 -17.27598 -16.61804 -16.21554 -15.53293 -15.07042 -14.84601 -14.67786 -14.38385 -14.22664 -13.73844 -13.54195 -13.35789 -13.25682 -13.13195 -13.01406 -12.87143 -12.54989 -12.51741 -12.27201 -12.15865 -11.91333 -11.62741 -11.35752 -11.22015 -10.93897 -10.93572 -10.76719 -10.61184 -10.34331 -10.14524 -9.79586 -9.50506 -9.07772 -8.66957 -8.52300 -8.43231 -8.19108 -8.14661 -7.04999 -5.84888 -3.15097 1.59974 1.65385 2.01492 2.52779 3.22273 3.36209 3.41940 3.44138 3.44629 3.81030 4.01558 4.50109 4.92365 4.95387 5.02664 5.02893 5.14755 5.19104 5.26975 5.31737 5.32378 5.50772 5.52717 5.59817 5.62536 5.70245 5.75133 5.76788 5.86133 5.97032 5.98700 6.04931 6.15097 6.18059 6.22667 6.28785 6.31278 6.39719 6.45801 6.58039 6.67645 6.72775 6.85800 6.94584 6.97298 7.03001 7.25040 7.52866 7.61049 7.99702 8.32054 8.65085 9.44022 9.98874 10.33694 11.37058 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.004643 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.769363 B = 6028.914604 C = 8960.501148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.113 4.113 3 C -0.029 4.029 4 N -0.552 5.552 5 H 0.416 0.584 6 C 0.052 3.948 7 C -0.220 4.220 8 C 0.609 3.391 9 O -0.556 6.556 10 N -0.614 5.614 11 C 0.118 3.882 12 C -0.075 4.075 13 H 0.092 0.908 14 C -0.051 4.051 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.131 4.131 18 C -0.119 4.119 19 C -0.107 4.107 20 C 0.180 3.820 21 H 0.068 0.932 22 N -0.712 5.712 23 C -0.246 4.246 24 H 0.071 0.929 25 C -0.007 4.007 26 N -0.927 5.927 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.281 1.281 31 C 0.070 3.930 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.166 0.834 36 H 0.174 0.826 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.052 0.948 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 -0.237 -13.216 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.157 4.157 4 N -0.146 5.146 5 H 0.252 0.748 6 C -0.084 4.084 7 C -0.230 4.230 8 C 0.400 3.600 9 O -0.435 6.435 10 N -0.347 5.347 11 C -0.004 4.004 12 C -0.095 4.095 13 H 0.110 0.890 14 C -0.051 4.051 15 C -0.134 4.134 16 C -0.139 4.139 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.125 4.125 20 C 0.067 3.933 21 H 0.086 0.914 22 N -0.352 5.352 23 C -0.376 4.376 24 H 0.089 0.911 25 C -0.204 4.204 26 N -0.575 5.575 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.217 1.217 30 H -0.207 1.207 31 C -0.056 4.056 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.183 0.817 36 H 0.191 0.809 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.000 -0.172 -13.397 13.547 hybrid contribution 1.294 0.668 0.880 1.701 sum -0.706 0.496 -12.517 12.547 Atomic orbital electron populations 1.20197 0.89635 1.02556 1.01808 1.20485 0.95436 0.90398 1.05628 1.21502 0.82576 0.99000 1.12597 1.41481 1.08186 1.06761 1.58144 0.74773 1.22188 0.98899 0.83605 1.03683 1.20227 0.92729 0.92526 1.17553 1.17023 0.82876 0.83507 0.76558 1.90700 1.21328 1.82388 1.49117 1.48604 1.21251 1.06138 1.58723 1.22362 1.01823 0.80081 0.96178 1.21538 0.99267 0.91114 0.97546 0.89011 1.19604 0.96247 0.94324 0.94955 1.20970 0.97894 0.95792 0.98772 1.21039 1.00096 0.93584 0.99195 1.21049 0.98427 0.99309 0.96162 1.21086 0.98189 0.95921 0.98541 1.21089 1.00054 0.93019 0.98349 1.21187 0.94937 0.90396 0.86746 0.91387 1.42448 1.10312 1.77458 1.04966 1.19193 0.88103 1.36386 0.93966 0.91093 1.24737 0.97082 1.02027 0.96546 1.69658 1.27249 1.53417 1.07148 0.86238 0.83298 0.78412 0.78491 1.21776 1.21735 1.20688 1.23556 0.82983 1.03575 0.95485 0.92018 0.92471 0.90277 0.81679 0.80875 0.90029 0.91137 0.86195 0.86515 0.86675 0.86442 0.86049 0.77938 0.93390 0.92968 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.21 36.01 0.37 -0.78 16 2 C -0.11 -1.68 6.35 -102.54 -0.65 -2.33 16 3 C -0.03 -0.35 11.82 -16.82 -0.20 -0.54 16 4 N -0.55 -6.02 5.90 -12.85 -0.08 -6.10 16 5 H 0.42 3.04 8.96 -40.82 -0.37 2.68 16 6 C 0.05 0.70 10.15 -16.85 -0.17 0.53 16 7 C -0.22 -3.60 5.97 -103.35 -0.62 -4.22 16 8 C 0.61 11.17 7.82 -12.59 -0.10 11.07 16 9 O -0.56 -11.48 15.73 5.25 0.08 -11.40 16 10 N -0.61 -10.29 3.29 -171.29 -0.56 -10.86 16 11 C 0.12 1.82 6.47 -2.31 -0.01 1.80 16 12 C -0.07 -1.22 2.98 -90.08 -0.27 -1.48 16 13 H 0.09 1.64 7.54 -51.93 -0.39 1.25 16 14 C -0.05 -0.78 4.93 -104.62 -0.52 -1.29 16 15 C -0.12 -1.59 8.19 -39.58 -0.32 -1.92 16 16 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 17 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 18 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16 19 C -0.11 -1.61 9.68 -39.59 -0.38 -1.99 16 20 C 0.18 3.29 3.13 -66.56 -0.21 3.08 16 21 H 0.07 1.25 7.15 -51.93 -0.37 0.88 16 22 N -0.71 -16.61 5.07 -52.10 -0.26 -16.88 16 23 C -0.25 -6.35 9.97 -15.06 -0.15 -6.50 16 24 H 0.07 1.77 7.83 -52.48 -0.41 1.35 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 27 Si 0.90 21.49 29.55 -169.99 -5.02 16.47 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 31 C 0.07 1.16 5.08 -2.98 -0.02 1.15 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.23 6.77 -51.93 -0.35 0.87 16 35 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.17 2.05 6.03 -52.48 -0.32 1.73 16 37 H 0.08 1.30 7.81 -51.93 -0.41 0.89 16 38 H 0.07 0.96 6.71 -51.93 -0.35 0.61 16 39 H 0.12 1.47 7.25 -52.48 -0.38 1.09 16 40 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 41 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 43 H 0.12 1.78 7.98 -52.48 -0.42 1.36 16 44 H 0.39 9.88 7.54 -40.82 -0.31 9.58 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.05 0.74 7.46 -51.93 -0.39 0.35 16 47 H 0.09 1.67 6.68 -51.93 -0.35 1.32 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -32.97 384.87 -10.33 -43.30 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -6.48 Total: 15.65 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -4.54 Total: -9.66 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.18 Total: -60.16 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.97 -10.33 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081226526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.772 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds