Wall clock time and date at job start Tue Mar 31 2020 22:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38935 * 119.69248 * 2 1 4 4 C 1.37679 * 120.64915 * 180.02562 * 3 2 1 5 5 C 1.39231 * 119.80453 * 359.97438 * 4 3 2 6 6 N 1.37480 * 133.17223 * 180.02562 * 5 4 3 7 7 H 0.96999 * 125.61411 * 359.96439 * 6 5 4 8 8 C 1.38150 * 108.78413 * 180.22282 * 6 5 4 9 9 C 1.47059 * 125.42878 * 179.75270 * 8 6 5 10 10 O 1.21651 * 119.99831 * 180.02562 * 9 8 6 11 11 N 1.34769 * 120.00312 * 0.03532 * 9 8 6 12 12 C 1.47294 * 136.54149 * 359.97438 * 11 9 8 13 13 C 1.54074 * 87.60552 * 151.37038 * 12 11 9 14 14 H 1.09002 * 115.04760 * 141.62480 * 13 12 11 15 15 C 1.53068 * 111.39317 * 273.09710 * 13 12 11 16 16 C 1.53146 * 109.21659 * 142.39934 * 15 13 12 17 17 N 1.46539 * 108.25279 * 301.59421 * 16 15 13 18 18 C 1.36940 * 119.73984 * 236.40180 * 17 16 15 19 19 H 1.08001 * 119.99834 * 25.15511 * 18 17 16 20 20 C 1.38805 * 120.00042 * 205.16055 * 18 17 16 21 21 N 1.31618 * 120.00065 * 14.45045 * 20 18 17 22 22 Si 1.86807 * 120.00079 * 194.45273 * 20 18 17 23 23 H 1.48499 * 109.47168 * 89.99640 * 22 20 18 24 24 H 1.48496 * 109.47222 * 210.00072 * 22 20 18 25 25 H 1.48505 * 109.46933 * 330.00111 * 22 20 18 26 26 C 1.45696 * 120.52485 * 56.41466 * 17 16 15 27 27 C 1.46465 * 136.54548 * 179.62371 * 11 9 8 28 28 H 1.09000 * 111.44344 * 96.38253 * 27 11 9 29 29 C 1.35869 * 109.13873 * 359.60219 * 8 6 5 30 30 C 1.40846 * 119.43506 * 0.02562 * 5 4 3 31 31 C 1.36440 * 119.69054 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47085 * 269.97983 * 1 2 3 33 33 H 1.09002 * 109.46757 * 29.97607 * 1 2 3 34 34 H 1.08996 * 109.47225 * 149.97504 * 1 2 3 35 35 H 1.08001 * 119.67950 * 0.02562 * 3 2 1 36 36 H 1.07995 * 120.09753 * 180.02562 * 4 3 2 37 37 H 1.08999 * 113.52533 * 266.05539 * 12 11 9 38 38 H 1.09002 * 113.53061 * 36.68460 * 12 11 9 39 39 H 1.09000 * 109.51571 * 262.32656 * 15 13 12 40 40 H 1.08999 * 109.51183 * 22.42360 * 15 13 12 41 41 H 1.09002 * 109.70482 * 61.28008 * 16 15 13 42 42 H 1.08993 * 109.70739 * 181.86256 * 16 15 13 43 43 H 0.97001 * 119.99817 * 179.97438 * 21 20 18 44 44 H 1.09003 * 108.78492 * 80.90277 * 26 17 16 45 45 H 1.08995 * 108.79202 * 199.22901 * 26 17 16 46 46 H 1.07998 * 126.13589 * 180.12825 * 29 8 6 47 47 H 1.08005 * 120.08404 * 359.95273 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2069 0.0000 4 6 3.5718 1.2299 -0.0005 5 6 4.2839 0.0335 -0.0005 6 7 5.6266 -0.2620 -0.0005 7 1 6.3477 0.3868 -0.0010 8 6 5.7800 -1.6349 -0.0056 9 6 7.0655 -2.3491 -0.0124 10 8 7.0855 -3.5654 -0.0170 11 7 8.2214 -1.6562 -0.0134 12 6 8.6175 -0.2375 -0.0096 13 6 9.9037 -0.6654 0.7227 14 1 10.8057 -0.1334 0.4203 15 6 9.6933 -0.7148 2.2381 16 6 10.4670 -1.9035 2.8159 17 7 9.9841 -3.1250 2.1662 18 6 9.4948 -4.1520 2.9286 19 1 9.0857 -3.9504 3.9076 20 6 9.5249 -5.4520 2.4432 21 7 10.2656 -5.7465 1.3958 22 14 8.5139 -6.7837 3.2763 23 1 7.1676 -6.8462 2.6527 24 1 9.1943 -8.0940 3.1174 25 1 8.3760 -6.4695 4.7211 26 6 10.0205 -3.2556 0.7156 27 6 9.6512 -1.9735 -0.0125 28 1 10.0649 -1.9515 -1.0207 29 6 4.5538 -2.2201 0.0000 30 6 3.5839 -1.1887 -0.0005 31 6 2.1828 -1.1853 -0.0005 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3633 -0.8897 -0.5142 35 1 1.6450 2.1363 0.0004 36 1 4.0977 2.1732 -0.0001 37 1 8.7978 0.1665 -1.0058 38 1 7.9643 0.3951 0.5915 39 1 10.0575 0.2095 2.6866 40 1 8.6313 -0.8306 2.4546 41 1 11.5320 -1.7792 2.6197 42 1 10.2961 -1.9658 3.8906 43 1 10.2869 -6.6551 1.0569 44 1 11.0289 -3.5390 0.4140 45 1 9.3305 -4.0445 0.4166 46 1 4.3547 -3.2816 0.0000 47 1 1.6391 -2.1185 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084566527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:33 Heat of formation + Delta-G solvation = 95.894402 kcal Electronic energy + Delta-G solvation = -29832.115663 eV Core-core repulsion = 25982.506185 eV Total energy + Delta-G solvation = -3849.609478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61451 -40.47153 -37.95223 -37.01540 -35.28383 -32.34900 -32.23429 -31.54985 -30.19633 -29.48792 -28.60531 -27.04111 -26.44814 -24.05018 -23.83597 -22.62211 -21.83464 -20.99768 -20.63687 -19.77624 -18.39967 -17.60640 -17.20480 -16.17421 -15.91654 -15.49373 -15.16266 -14.82598 -14.75233 -14.23846 -14.05374 -13.79118 -13.78376 -13.65875 -13.42322 -13.20917 -13.08180 -12.84851 -12.73251 -12.45474 -12.27946 -12.00594 -11.73031 -11.56984 -11.19254 -11.16063 -10.96500 -10.72804 -10.65435 -10.50950 -10.21069 -9.94963 -9.89892 -9.79867 -9.74792 -9.14354 -8.33506 -8.31500 -8.12103 -7.75723 -6.61057 -5.65830 -3.08299 0.80488 1.51721 2.25386 2.90644 3.09827 3.49762 3.55591 3.58795 3.67018 3.82182 4.48615 4.51061 4.59386 4.62339 4.79426 4.94010 5.04742 5.09664 5.20958 5.27295 5.33040 5.36785 5.39558 5.47810 5.53966 5.57610 5.60150 5.63255 5.76668 5.79010 5.92278 5.96634 6.04486 6.05078 6.21397 6.30551 6.32125 6.42079 6.50375 6.56091 6.63537 6.70010 6.73624 6.94216 7.03518 7.36233 7.45727 7.75788 7.93550 8.12850 8.55955 8.58653 9.35131 9.98861 10.45839 11.42339 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.003557 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.506305 B = 7870.980064 C = 9214.876953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.129 4.129 5 C 0.101 3.899 6 N -0.579 5.579 7 H 0.415 0.585 8 C 0.041 3.959 9 C 0.604 3.396 10 O -0.492 6.492 11 N -0.632 5.632 12 C 0.085 3.915 13 C -0.108 4.108 14 H 0.094 0.906 15 C -0.117 4.117 16 C 0.148 3.852 17 N -0.584 5.584 18 C -0.255 4.255 19 H 0.063 0.937 20 C 0.012 3.988 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.167 3.833 27 C 0.120 3.880 28 H 0.078 0.922 29 C -0.121 4.121 30 C -0.110 4.110 31 C -0.062 4.062 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.056 0.944 43 H 0.252 0.748 44 H 0.030 0.970 45 H 0.106 0.894 46 H 0.155 0.845 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.464 17.955 -5.333 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.009 4.009 6 N -0.185 5.185 7 H 0.255 0.745 8 C -0.068 4.068 9 C 0.392 3.608 10 O -0.365 6.365 11 N -0.368 5.368 12 C -0.039 4.039 13 C -0.127 4.127 14 H 0.113 0.887 15 C -0.156 4.156 16 C 0.022 3.978 17 N -0.306 5.306 18 C -0.384 4.384 19 H 0.080 0.920 20 C -0.186 4.186 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.041 3.959 27 C 0.016 3.984 28 H 0.096 0.904 29 C -0.147 4.147 30 C -0.115 4.115 31 C -0.081 4.081 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.124 0.876 46 H 0.173 0.827 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.460 16.995 -5.415 21.201 hybrid contribution -0.164 -0.185 0.237 0.342 sum -11.624 16.810 -5.178 21.083 Atomic orbital electron populations 1.20706 0.91249 1.02419 1.02018 1.19331 0.95947 0.92809 1.04172 1.20688 0.92797 0.97494 1.00202 1.20005 0.93816 0.94689 1.06404 1.18363 0.83225 0.95557 1.03730 1.42320 1.05994 1.06370 1.63849 0.74458 1.20459 0.95421 0.81891 1.09071 1.16535 0.80261 0.86204 0.77753 1.90948 1.85295 1.11670 1.48585 1.49384 1.06165 1.08165 1.73124 1.23478 0.96030 0.84393 0.99966 1.22682 0.96313 0.97018 0.96680 0.88742 1.21859 1.01656 0.99590 0.92509 1.20715 0.94606 0.86422 0.96091 1.43446 1.72204 1.14025 1.00943 1.19091 1.33368 0.85665 1.00291 0.91952 1.24923 0.98358 0.97087 0.98273 1.70000 1.39665 1.18854 1.26290 0.86314 0.80481 0.81313 0.78774 1.21157 1.21841 1.20687 1.20388 1.00631 0.92018 0.82899 1.22878 0.77772 0.98955 0.98774 0.90433 1.20902 0.89204 0.99438 1.05191 1.18181 0.93519 0.92293 1.07477 1.20259 0.91507 0.97838 0.98480 0.91584 0.91900 0.91780 0.85820 0.86213 0.89974 0.91809 0.92537 0.92224 0.96168 0.92520 0.93752 0.95219 0.87609 0.82696 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.99 36.01 0.36 -0.45 16 2 C -0.12 -1.27 5.84 -105.01 -0.61 -1.88 16 3 C -0.09 -0.91 9.66 -39.53 -0.38 -1.29 16 4 C -0.13 -1.39 10.08 -39.42 -0.40 -1.78 16 5 C 0.10 1.36 7.25 -83.98 -0.61 0.75 16 6 N -0.58 -7.87 6.00 -7.36 -0.04 -7.92 16 7 H 0.41 4.60 5.77 -40.82 -0.24 4.37 16 8 C 0.04 0.71 6.94 -82.29 -0.57 0.13 16 9 C 0.60 12.29 7.97 -12.69 -0.10 12.19 16 10 O -0.49 -12.40 16.02 5.23 0.08 -12.32 16 11 N -0.63 -11.20 3.36 -188.74 -0.64 -11.83 16 12 C 0.09 1.06 6.69 -11.54 -0.08 0.98 16 13 C -0.11 -1.55 4.52 -90.45 -0.41 -1.96 16 14 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.12 -1.88 5.71 -26.62 -0.15 -2.03 16 16 C 0.15 3.02 6.46 -3.95 -0.03 2.99 16 17 N -0.58 -14.79 3.03 -174.37 -0.53 -15.32 16 18 C -0.25 -7.29 9.53 -15.06 -0.14 -7.44 16 19 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 20 C 0.01 0.36 4.94 -17.43 -0.09 0.27 16 21 N -0.90 -27.36 10.93 55.49 0.61 -26.76 16 22 Si 0.90 23.43 29.58 -169.99 -5.03 18.40 16 23 H -0.28 -7.61 7.11 56.52 0.40 -7.21 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.17 4.09 4.58 -4.99 -0.02 4.07 16 27 C 0.12 2.21 4.13 -77.38 -0.32 1.89 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 C -0.12 -2.00 10.53 -39.16 -0.41 -2.42 16 30 C -0.11 -1.60 6.16 -106.93 -0.66 -2.26 16 31 C -0.06 -0.76 9.68 -39.53 -0.38 -1.14 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.06 0.44 8.07 -51.93 -0.42 0.03 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.68 6.22 -51.93 -0.32 0.36 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.15 7.87 -51.93 -0.41 0.74 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.03 0.78 7.99 -51.93 -0.42 0.37 16 45 H 0.11 3.06 4.88 -51.93 -0.25 2.81 16 46 H 0.16 2.55 8.06 -52.49 -0.42 2.12 16 47 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -34.83 374.74 -11.55 -46.38 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.65 Total: 3.09 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -5.00 Total: 0.63 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.60 Total: -61.83 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.03 Total: 18.40 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.83 -11.55 -46.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084566527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.274 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds