Wall clock time and date at job start Tue Mar 31 2020 22:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38935 * 119.69248 * 2 1 4 4 C 1.37679 * 120.64915 * 180.02562 * 3 2 1 5 5 C 1.39231 * 119.80453 * 359.97438 * 4 3 2 6 6 N 1.37480 * 133.17223 * 180.02562 * 5 4 3 7 7 H 0.96999 * 125.61411 * 359.96439 * 6 5 4 8 8 C 1.38150 * 108.78413 * 180.22282 * 6 5 4 9 9 C 1.47059 * 125.42878 * 179.75270 * 8 6 5 10 10 O 1.21651 * 119.99831 * 180.02562 * 9 8 6 11 11 N 1.34769 * 120.00312 * 0.03532 * 9 8 6 12 12 C 1.47294 * 136.54149 * 359.97438 * 11 9 8 13 13 C 1.54074 * 87.60552 * 151.37038 * 12 11 9 14 14 H 1.09002 * 115.04760 * 141.62480 * 13 12 11 15 15 C 1.53068 * 111.39317 * 273.09710 * 13 12 11 16 16 C 1.53146 * 109.21659 * 142.39934 * 15 13 12 17 17 N 1.46539 * 108.25279 * 301.59421 * 16 15 13 18 18 C 1.36940 * 119.73984 * 236.40180 * 17 16 15 19 19 H 1.08001 * 119.99834 * 25.15511 * 18 17 16 20 20 C 1.38805 * 120.00042 * 205.16055 * 18 17 16 21 21 N 1.31618 * 120.00065 * 14.45045 * 20 18 17 22 22 Si 1.86807 * 120.00079 * 194.45273 * 20 18 17 23 23 H 1.48499 * 109.47168 * 89.99640 * 22 20 18 24 24 H 1.48496 * 109.47222 * 210.00072 * 22 20 18 25 25 H 1.48505 * 109.46933 * 330.00111 * 22 20 18 26 26 C 1.45696 * 120.52485 * 56.41466 * 17 16 15 27 27 C 1.46465 * 136.54548 * 179.62371 * 11 9 8 28 28 H 1.09000 * 111.44344 * 96.38253 * 27 11 9 29 29 C 1.35869 * 109.13873 * 359.60219 * 8 6 5 30 30 C 1.40846 * 119.43506 * 0.02562 * 5 4 3 31 31 C 1.36440 * 119.69054 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47085 * 269.97983 * 1 2 3 33 33 H 1.09002 * 109.46757 * 29.97607 * 1 2 3 34 34 H 1.08996 * 109.47225 * 149.97504 * 1 2 3 35 35 H 1.08001 * 119.67950 * 0.02562 * 3 2 1 36 36 H 1.07995 * 120.09753 * 180.02562 * 4 3 2 37 37 H 1.08999 * 113.52533 * 266.05539 * 12 11 9 38 38 H 1.09002 * 113.53061 * 36.68460 * 12 11 9 39 39 H 1.09000 * 109.51571 * 262.32656 * 15 13 12 40 40 H 1.08999 * 109.51183 * 22.42360 * 15 13 12 41 41 H 1.09002 * 109.70482 * 61.28008 * 16 15 13 42 42 H 1.08993 * 109.70739 * 181.86256 * 16 15 13 43 43 H 0.97001 * 119.99817 * 179.97438 * 21 20 18 44 44 H 1.09003 * 108.78492 * 80.90277 * 26 17 16 45 45 H 1.08995 * 108.79202 * 199.22901 * 26 17 16 46 46 H 1.07998 * 126.13589 * 180.12825 * 29 8 6 47 47 H 1.08005 * 120.08404 * 359.95273 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2069 0.0000 4 6 3.5718 1.2299 -0.0005 5 6 4.2839 0.0335 -0.0005 6 7 5.6266 -0.2620 -0.0005 7 1 6.3477 0.3868 -0.0010 8 6 5.7800 -1.6349 -0.0056 9 6 7.0655 -2.3491 -0.0124 10 8 7.0855 -3.5654 -0.0170 11 7 8.2214 -1.6562 -0.0134 12 6 8.6175 -0.2375 -0.0096 13 6 9.9037 -0.6654 0.7227 14 1 10.8057 -0.1334 0.4203 15 6 9.6933 -0.7148 2.2381 16 6 10.4670 -1.9035 2.8159 17 7 9.9841 -3.1250 2.1662 18 6 9.4948 -4.1520 2.9286 19 1 9.0857 -3.9504 3.9076 20 6 9.5249 -5.4520 2.4432 21 7 10.2656 -5.7465 1.3958 22 14 8.5139 -6.7837 3.2763 23 1 7.1676 -6.8462 2.6527 24 1 9.1943 -8.0940 3.1174 25 1 8.3760 -6.4695 4.7211 26 6 10.0205 -3.2556 0.7156 27 6 9.6512 -1.9735 -0.0125 28 1 10.0649 -1.9515 -1.0207 29 6 4.5538 -2.2201 0.0000 30 6 3.5839 -1.1887 -0.0005 31 6 2.1828 -1.1853 -0.0005 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3633 -0.8897 -0.5142 35 1 1.6450 2.1363 0.0004 36 1 4.0977 2.1732 -0.0001 37 1 8.7978 0.1665 -1.0058 38 1 7.9643 0.3951 0.5915 39 1 10.0575 0.2095 2.6866 40 1 8.6313 -0.8306 2.4546 41 1 11.5320 -1.7792 2.6197 42 1 10.2961 -1.9658 3.8906 43 1 10.2869 -6.6551 1.0569 44 1 11.0289 -3.5390 0.4140 45 1 9.3305 -4.0445 0.4166 46 1 4.3547 -3.2816 0.0000 47 1 1.6391 -2.1185 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084566527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:32 Heat of formation + Delta-G solvation = 73.421707 kcal Electronic energy + Delta-G solvation = -29833.090152 eV Core-core repulsion = 25982.506185 eV Total energy + Delta-G solvation = -3850.583967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.73874 -41.76550 -39.32161 -38.12212 -37.12595 -34.06457 -33.28319 -32.54642 -31.96073 -30.88654 -29.77292 -28.68908 -27.32334 -25.79533 -25.16808 -23.93978 -23.00837 -22.36562 -21.75538 -21.02149 -19.80211 -19.17178 -18.37399 -17.75232 -17.44128 -17.04278 -16.33740 -16.09515 -15.89633 -15.76491 -15.49668 -15.14689 -15.03385 -14.84564 -14.70613 -14.45632 -14.38057 -14.12143 -14.06679 -13.85865 -13.59107 -13.21782 -12.91300 -12.82351 -12.73322 -12.52843 -12.43763 -12.24899 -12.04518 -12.01453 -11.82506 -11.80054 -11.55562 -11.28539 -10.93124 -10.83838 -10.47803 -9.74073 -9.10440 -8.76930 -8.69400 -7.87413 -5.30944 -0.25428 0.61969 1.09202 1.33197 1.42249 1.44373 1.67293 1.93289 2.30480 2.46478 2.88280 3.23708 3.34690 3.35227 3.68140 3.69951 3.86649 4.05251 4.06237 4.09232 4.23356 4.28182 4.35897 4.40452 4.45862 4.47871 4.61348 4.63908 4.69309 4.74849 4.80737 4.86667 4.93237 4.96132 5.02859 5.04776 5.11371 5.24421 5.26593 5.36202 5.44114 5.54227 5.54520 5.61945 5.66838 5.76864 5.81346 6.11631 6.38129 6.42493 6.74370 7.09132 7.17428 7.94418 8.31836 9.16624 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.003557 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.506305 B = 7870.980064 C = 9214.876953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.117 4.117 3 C -0.084 4.084 4 C -0.128 4.128 5 C 0.097 3.903 6 N -0.562 5.562 7 H 0.427 0.573 8 C 0.023 3.977 9 C 0.595 3.405 10 O -0.566 6.566 11 N -0.637 5.637 12 C 0.098 3.902 13 C -0.094 4.094 14 H 0.140 0.860 15 C -0.106 4.106 16 C 0.139 3.861 17 N -0.602 5.602 18 C -0.258 4.258 19 H 0.058 0.942 20 C -0.044 4.044 21 N -0.930 5.930 22 Si 0.952 3.048 23 H -0.302 1.302 24 H -0.287 1.287 25 H -0.263 1.263 26 C 0.177 3.823 27 C 0.107 3.893 28 H 0.100 0.900 29 C -0.138 4.138 30 C -0.136 4.136 31 C -0.083 4.083 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.049 0.951 43 H 0.244 0.756 44 H -0.003 1.003 45 H 0.053 0.947 46 H 0.136 0.864 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.839 23.619 -5.354 27.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.118 4.118 3 C -0.103 4.103 4 C -0.148 4.148 5 C -0.013 4.013 6 N -0.170 5.170 7 H 0.270 0.730 8 C -0.088 4.088 9 C 0.385 3.615 10 O -0.444 6.444 11 N -0.371 5.371 12 C -0.024 4.024 13 C -0.113 4.113 14 H 0.158 0.842 15 C -0.145 4.145 16 C 0.014 3.986 17 N -0.325 5.325 18 C -0.388 4.388 19 H 0.076 0.924 20 C -0.239 4.239 21 N -0.577 5.577 22 Si 0.782 3.218 23 H -0.230 1.230 24 H -0.213 1.213 25 H -0.188 1.188 26 C 0.051 3.949 27 C 0.003 3.997 28 H 0.118 0.882 29 C -0.166 4.166 30 C -0.140 4.140 31 C -0.102 4.102 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.179 0.821 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.015 0.985 45 H 0.071 0.929 46 H 0.153 0.847 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.801 22.773 -5.412 26.679 hybrid contribution 0.173 -1.847 0.272 1.875 sum -12.627 20.926 -5.141 24.975 Atomic orbital electron populations 1.20778 0.89026 1.03632 1.02922 1.19760 0.97634 0.92368 1.02037 1.21208 0.92728 0.98607 0.97734 1.20428 0.94265 0.94777 1.05367 1.18702 0.82846 0.96151 1.03650 1.42064 1.06681 1.04847 1.63451 0.72969 1.19913 0.93724 0.83571 1.11543 1.17028 0.81860 0.85741 0.76855 1.90901 1.86547 1.14810 1.52179 1.49525 1.05043 1.10995 1.71573 1.23752 0.94584 0.81556 1.02470 1.22716 0.99364 0.94084 0.95146 0.84183 1.21740 0.99567 0.99220 0.93949 1.20970 0.95748 0.86087 0.95815 1.43679 1.72575 1.14921 1.01319 1.19365 1.32322 0.86804 1.00306 0.92394 1.25595 0.99838 0.99136 0.99342 1.70159 1.41334 1.18477 1.27729 0.85485 0.78200 0.79437 0.78721 1.22979 1.21347 1.18793 1.19998 0.97485 0.94260 0.83165 1.22931 0.78934 0.97948 0.99894 0.88210 1.20965 0.90515 0.99369 1.05721 1.18337 0.94444 0.92182 1.09067 1.20474 0.90801 0.99264 0.99664 0.90701 0.89838 0.91534 0.82103 0.82877 0.85668 0.89293 0.87759 0.94455 0.95106 0.93209 0.94637 0.98529 0.92884 0.84650 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.99 71.24 0.71 -0.53 16 2 C -0.12 -2.10 5.84 -20.12 -0.12 -2.22 16 3 C -0.08 -1.26 9.66 22.30 0.22 -1.05 16 4 C -0.13 -2.22 10.08 22.38 0.23 -1.99 16 5 C 0.10 2.40 7.25 39.13 0.28 2.68 16 6 N -0.56 -14.37 6.00 -177.18 -1.06 -15.44 16 7 H 0.43 8.01 5.77 -92.71 -0.54 7.47 16 8 C 0.02 0.81 6.94 39.91 0.28 1.09 16 9 C 0.60 25.55 7.97 86.56 0.69 26.24 16 10 O -0.57 -31.37 16.02 -4.19 -0.07 -31.43 16 11 N -0.64 -22.34 3.36 -869.30 -2.92 -25.26 16 12 C 0.10 1.99 6.69 81.09 0.54 2.53 16 13 C -0.09 -2.33 4.52 -10.68 -0.05 -2.38 16 14 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.11 -3.06 5.71 30.67 0.18 -2.89 16 16 C 0.14 5.55 6.46 86.42 0.56 6.11 16 17 N -0.60 -31.60 3.03 -705.58 -2.14 -33.74 16 18 C -0.26 -15.46 9.53 84.03 0.80 -14.66 16 19 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 20 C -0.04 -2.71 4.94 84.86 0.42 -2.29 16 21 N -0.93 -60.24 10.93 21.65 0.24 -60.00 16 22 Si 0.95 50.90 29.58 68.60 2.03 52.92 16 23 H -0.30 -16.83 7.11 99.48 0.71 -16.12 16 24 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 25 H -0.26 -13.13 7.11 99.48 0.71 -12.43 16 26 C 0.18 9.16 4.58 86.20 0.39 9.56 16 27 C 0.11 3.88 4.13 38.89 0.16 4.04 16 28 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 29 C -0.14 -4.93 10.53 22.55 0.24 -4.70 16 30 C -0.14 -3.98 6.16 -21.36 -0.13 -4.11 16 31 C -0.08 -1.99 9.68 22.30 0.22 -1.77 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 34 H 0.07 0.76 8.07 -2.39 -0.02 0.74 16 35 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 1.43 6.22 -2.39 -0.01 1.42 16 39 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.04 1.26 7.70 -2.39 -0.02 1.24 16 41 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.05 2.01 7.87 -2.39 -0.02 1.99 16 43 H 0.24 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.00 -0.17 7.99 -2.39 -0.02 -0.19 16 45 H 0.05 3.32 4.88 -2.39 -0.01 3.31 16 46 H 0.14 5.12 8.06 -2.91 -0.02 5.09 16 47 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -87.64 374.74 2.14 -85.50 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.46 Total: 13.78 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 5.61 Total: 13.67 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -5.89 Total: -134.44 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.07 Total: -31.43 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.03 Total: 52.92 kcal Total: -87.64 2.14 -85.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084566527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.922 kcal (2) G-P(sol) polarization free energy of solvation -87.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds