Wall clock time and date at job start Tue Mar 31 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35733 * 120.33664 * 2 1 4 4 C 1.40829 * 119.72265 * 180.02562 * 3 2 1 5 5 C 1.34534 * 120.58163 * 0.02562 * 4 3 2 6 6 N 1.37437 * 120.74420 * 0.02562 * 5 4 3 7 7 C 1.35130 * 131.28534 * 180.02562 * 6 5 4 8 8 C 1.38061 * 108.76905 * 179.97438 * 7 6 5 9 9 C 1.47496 * 126.37206 * 179.97438 * 8 7 6 10 10 O 1.21596 * 119.99899 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99774 * 0.03053 * 9 8 7 12 12 C 1.47285 * 136.54372 * 359.97438 * 11 9 8 13 13 C 1.54088 * 87.60700 * 151.36563 * 12 11 9 14 14 H 1.08999 * 115.04539 * 142.49825 * 13 12 11 15 15 C 1.53063 * 111.38971 * 273.97285 * 13 12 11 16 16 C 1.53153 * 109.21390 * 142.39928 * 15 13 12 17 17 N 1.46545 * 108.24868 * 301.58550 * 16 15 13 18 18 C 1.36931 * 119.73919 * 236.40185 * 17 16 15 19 19 H 1.07998 * 120.00259 * 25.14878 * 18 17 16 20 20 C 1.38813 * 120.00067 * 205.15911 * 18 17 16 21 21 N 1.31620 * 119.99912 * 14.46330 * 20 18 17 22 22 Si 1.86798 * 120.00110 * 194.46970 * 20 18 17 23 23 H 1.48505 * 109.46937 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47261 * 119.99463 * 22 20 18 25 25 H 1.48502 * 109.46995 * 239.99405 * 22 20 18 26 26 C 1.45704 * 120.51930 * 56.42524 * 17 16 15 27 27 C 1.46467 * 136.54136 * 179.62526 * 11 9 8 28 28 H 1.08996 * 111.44515 * 96.38339 * 27 11 9 29 29 C 1.41199 * 107.25535 * 0.02562 * 8 7 6 30 30 C 1.37945 * 119.80906 * 359.97438 * 6 5 4 31 31 H 1.08997 * 109.46969 * 269.98038 * 1 2 3 32 32 H 1.08997 * 109.46728 * 29.98408 * 1 2 3 33 33 H 1.09000 * 109.47147 * 149.98103 * 1 2 3 34 34 H 1.08000 * 120.13840 * 0.03724 * 3 2 1 35 35 H 1.08000 * 119.70703 * 179.97438 * 4 3 2 36 36 H 1.08006 * 119.62693 * 180.27202 * 5 4 3 37 37 H 1.07999 * 125.61535 * 359.97438 * 7 6 5 38 38 H 1.09000 * 113.52800 * 266.04527 * 12 11 9 39 39 H 1.08989 * 113.53095 * 36.61460 * 12 11 9 40 40 H 1.08998 * 109.51464 * 262.31508 * 15 13 12 41 41 H 1.08997 * 109.51427 * 22.42150 * 15 13 12 42 42 H 1.08999 * 109.70528 * 61.27242 * 16 15 13 43 43 H 1.08992 * 109.70635 * 181.85822 * 16 15 13 44 44 H 0.97003 * 120.00051 * 180.02562 * 21 20 18 45 45 H 1.08998 * 108.79269 * 80.89949 * 26 17 16 46 46 H 1.09006 * 108.78582 * 199.22320 * 26 17 16 47 47 H 1.08000 * 126.56731 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6008 1.1564 -0.0005 5 6 4.2728 -0.0091 -0.0016 6 7 3.6005 -1.2078 -0.0027 7 6 4.0499 -2.4822 -0.0034 8 6 2.9649 -3.3359 -0.0038 9 6 3.0118 -4.8101 -0.0051 10 8 1.9786 -5.4512 -0.0058 11 7 4.1999 -5.4464 -0.0054 12 6 5.6207 -5.0582 -0.0052 13 6 5.9147 -6.3790 0.7320 14 1 6.8414 -6.8736 0.4407 15 6 5.7456 -6.2234 2.2452 16 6 5.1251 -7.5015 2.8171 17 7 3.8380 -7.7239 2.1526 18 6 2.6976 -7.8387 2.9018 19 1 2.6460 -7.3837 3.8799 20 6 1.6080 -8.5401 2.4042 21 7 1.7533 -9.3271 1.3593 22 14 -0.0647 -8.3669 3.2175 23 1 0.0375 -7.4296 4.3649 24 1 -1.0421 -7.8389 2.2320 25 1 -0.5192 -9.6948 3.7026 26 6 3.7624 -7.8244 0.7010 27 6 4.6614 -6.8365 0.0001 28 1 4.8912 -7.1840 -1.0071 29 6 1.8019 -2.5351 -0.0039 30 6 2.2211 -1.2203 -0.0022 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6604 2.1112 0.0006 35 1 4.1460 2.0887 -0.0010 36 1 5.3529 -0.0027 0.0025 37 1 5.0871 -2.7833 -0.0035 38 1 6.0586 -5.0095 -1.0021 39 1 5.8290 -4.1701 0.5913 40 1 6.7192 -6.0542 2.7050 41 1 5.0924 -5.3760 2.4533 42 1 5.7867 -8.3471 2.6293 43 1 4.9705 -7.3869 3.8899 44 1 0.9918 -9.8169 1.0114 45 1 4.0474 -8.8335 0.4035 46 1 2.7332 -7.6448 0.3898 47 1 0.7800 -2.8846 -0.0039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084772235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:15 Heat of formation + Delta-G solvation = 117.051230 kcal Electronic energy + Delta-G solvation = -30036.589912 eV Core-core repulsion = 26187.897863 eV Total energy + Delta-G solvation = -3848.692049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.25723 -40.41076 -37.64616 -36.50306 -35.14208 -34.17748 -32.08422 -30.67567 -30.05574 -29.24588 -28.01659 -27.04780 -26.88034 -23.93925 -23.72785 -22.48628 -21.99144 -21.41291 -20.78306 -19.42024 -17.91407 -17.44399 -17.03617 -16.21683 -15.91165 -15.76493 -15.44242 -15.13581 -14.87208 -14.35211 -14.08286 -13.68939 -13.64754 -13.48644 -13.29524 -13.20875 -12.93759 -12.82087 -12.58941 -12.43432 -12.09837 -11.83533 -11.77294 -11.63970 -11.41470 -11.19329 -10.97548 -10.60071 -10.56693 -10.40017 -10.19051 -10.10019 -9.79216 -9.70062 -9.53511 -8.91835 -8.51805 -8.22389 -7.99746 -7.40002 -6.51338 -5.57431 -2.98961 0.65519 1.27909 2.34516 2.60388 3.35129 3.39516 3.53827 3.62115 3.63102 4.03988 4.31594 4.52070 4.61815 4.67410 4.71971 4.77147 4.85248 4.99116 5.20399 5.29167 5.31970 5.42247 5.44087 5.48643 5.55492 5.58923 5.67774 5.69081 5.78239 5.80439 5.89929 5.93532 5.98197 6.18659 6.20101 6.25897 6.33206 6.43369 6.46060 6.59012 6.65568 6.77799 6.82454 6.85335 7.06113 7.19693 7.58501 7.86352 8.03044 8.43628 8.66017 8.93695 9.44061 10.08436 10.55503 11.50865 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.003877 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.325035 B = 7221.092515 C = 8716.930060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.033 4.033 3 C -0.150 4.150 4 C -0.133 4.133 5 C 0.032 3.968 6 N -0.339 5.339 7 C -0.020 4.020 8 C -0.147 4.147 9 C 0.609 3.391 10 O -0.511 6.511 11 N -0.628 5.628 12 C 0.091 3.909 13 C -0.112 4.112 14 H 0.092 0.908 15 C -0.116 4.116 16 C 0.149 3.851 17 N -0.585 5.585 18 C -0.251 4.251 19 H 0.062 0.938 20 C 0.012 3.988 21 N -0.904 5.904 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.293 1.293 26 C 0.166 3.834 27 C 0.122 3.878 28 H 0.071 0.929 29 C -0.132 4.132 30 C 0.022 3.978 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.177 0.823 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.251 0.749 45 H 0.030 0.970 46 H 0.105 0.895 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.076 20.882 -5.279 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.035 4.035 3 C -0.170 4.170 4 C -0.153 4.153 5 C -0.086 4.086 6 N -0.003 5.003 7 C -0.152 4.152 8 C -0.155 4.155 9 C 0.398 3.602 10 O -0.385 6.385 11 N -0.364 5.364 12 C -0.033 4.033 13 C -0.131 4.131 14 H 0.110 0.890 15 C -0.156 4.156 16 C 0.022 3.978 17 N -0.307 5.307 18 C -0.380 4.380 19 H 0.080 0.920 20 C -0.187 4.187 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.220 1.220 26 C 0.040 3.960 27 C 0.018 3.982 28 H 0.089 0.911 29 C -0.156 4.156 30 C -0.082 4.082 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.176 0.824 37 H 0.194 0.806 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.123 0.877 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.339 20.693 -5.366 22.946 hybrid contribution -0.607 0.276 0.231 0.705 sum 7.733 20.969 -5.135 22.931 Atomic orbital electron populations 1.20753 0.89682 1.03416 1.03067 1.19381 0.96453 0.90131 0.97486 1.20747 0.93648 0.97732 1.04895 1.20633 0.94811 0.96903 1.02936 1.21594 0.98229 0.83312 1.05434 1.41283 1.07152 1.05297 1.46537 1.22487 0.99751 0.80350 1.12660 1.19827 0.93023 0.93041 1.09612 1.16722 0.81775 0.84915 0.76794 1.90866 1.31800 1.66869 1.49003 1.49236 1.03824 1.09870 1.73490 1.23428 0.81674 0.98565 0.99638 1.22703 0.97973 0.95805 0.96632 0.89013 1.21852 0.99585 1.01405 0.92718 1.20708 0.88207 0.92992 0.95878 1.43467 1.02006 1.84198 1.01041 1.19125 0.91295 1.27050 1.00550 0.92038 1.24896 0.98883 0.96586 0.98318 1.70014 1.29367 1.29297 1.26220 0.86255 0.85132 0.76896 0.78631 1.20542 1.21447 1.22031 1.20186 1.00193 0.92652 0.82984 1.22496 0.92837 0.84295 0.98579 0.91100 1.21127 0.98958 0.88743 1.06821 1.18608 0.81836 0.94879 1.12844 0.90373 0.90984 0.90660 0.85140 0.83947 0.82409 0.80564 0.90473 0.91236 0.92796 0.92065 0.96326 0.92682 0.93921 0.95250 0.87735 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.91 36.01 0.36 -0.67 16 2 C -0.03 -0.38 5.91 -104.32 -0.62 -1.00 16 3 C -0.15 -1.39 9.72 -39.50 -0.38 -1.77 16 4 C -0.13 -1.10 9.97 -39.91 -0.40 -1.49 16 5 C 0.03 0.31 10.89 -16.35 -0.18 0.13 16 6 N -0.34 -4.42 2.92 -60.42 -0.18 -4.60 16 7 C -0.02 -0.28 10.79 -16.16 -0.17 -0.45 16 8 C -0.15 -2.63 6.12 -105.07 -0.64 -3.27 16 9 C 0.61 13.11 8.00 -12.49 -0.10 13.01 16 10 O -0.51 -13.59 16.15 5.28 0.09 -13.51 16 11 N -0.63 -11.86 3.34 -189.27 -0.63 -12.49 16 12 C 0.09 1.21 6.51 -11.54 -0.08 1.13 16 13 C -0.11 -1.71 4.57 -90.44 -0.41 -2.13 16 14 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.12 -1.96 5.69 -26.62 -0.15 -2.11 16 16 C 0.15 3.14 6.46 -3.94 -0.03 3.11 16 17 N -0.58 -15.31 3.03 -175.04 -0.53 -15.84 16 18 C -0.25 -7.37 9.53 -15.06 -0.14 -7.51 16 19 H 0.06 1.80 7.83 -52.49 -0.41 1.38 16 20 C 0.01 0.35 4.94 -17.43 -0.09 0.26 16 21 N -0.90 -28.02 10.93 55.49 0.61 -27.41 16 22 Si 0.90 23.96 29.58 -169.99 -5.03 18.93 16 23 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 25 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 26 C 0.17 4.22 4.59 -5.55 -0.03 4.19 16 27 C 0.12 2.38 3.98 -77.94 -0.31 2.07 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 C -0.13 -2.22 10.27 -38.55 -0.40 -2.62 16 30 C 0.02 0.32 6.60 -84.00 -0.55 -0.24 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.18 1.97 5.11 -52.49 -0.27 1.70 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.80 6.01 -51.93 -0.31 0.49 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.15 7.68 -51.93 -0.40 0.76 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.03 0.80 7.99 -51.93 -0.42 0.39 16 46 H 0.10 3.14 4.95 -51.93 -0.26 2.88 16 47 H 0.15 2.58 7.93 -52.49 -0.42 2.16 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -37.27 374.24 -11.00 -48.27 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.65 Total: 0.35 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -4.32 Total: 0.65 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.73 Total: -60.33 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.03 Total: 18.93 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.27 -11.00 -48.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084772235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.318 kcal (2) G-P(sol) polarization free energy of solvation -37.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds