Wall clock time and date at job start Tue Mar 31 2020 22:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38750 * 119.85205 * 2 1 4 4 C 1.37767 * 120.63598 * 179.75154 * 3 2 1 5 5 C 1.39118 * 119.92991 * 0.24886 * 4 3 2 6 6 N 1.37963 * 133.18908 * 179.97438 * 5 4 3 7 7 H 0.97007 * 124.77935 * 359.96453 * 6 5 4 8 8 C 1.35461 * 110.42966 * 180.02562 * 6 5 4 9 9 C 1.36374 * 109.76842 * 0.02562 * 8 6 5 10 10 C 1.46913 * 126.76797 * 180.02562 * 9 8 6 11 11 O 1.21674 * 119.99944 * 179.97438 * 10 9 8 12 12 N 1.34781 * 120.00271 * 359.95514 * 10 9 8 13 13 C 1.47283 * 136.53781 * 0.02562 * 12 10 9 14 14 C 1.54083 * 87.60623 * 151.36453 * 13 12 10 15 15 H 1.08999 * 115.04946 * 141.62870 * 14 13 12 16 16 C 1.53061 * 111.39028 * 273.09410 * 14 13 12 17 17 C 1.53153 * 109.21490 * 142.39427 * 16 14 13 18 18 N 1.46539 * 108.25143 * 301.59272 * 17 16 14 19 19 C 1.36930 * 119.74071 * 236.39589 * 18 17 16 20 20 H 1.08003 * 119.99868 * 25.14865 * 19 18 17 21 21 C 1.38813 * 120.00165 * 205.15296 * 19 18 17 22 22 N 1.31623 * 120.00059 * 14.47234 * 21 19 18 23 23 Si 1.86799 * 120.00010 * 194.47142 * 21 19 18 24 24 H 1.48504 * 109.47244 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47393 * 120.00306 * 23 21 19 26 26 H 1.48510 * 109.47148 * 240.00205 * 23 21 19 27 27 C 1.45704 * 120.52252 * 56.42050 * 18 17 16 28 28 C 1.46462 * 136.54488 * 179.62669 * 12 10 9 29 29 H 1.09003 * 111.44245 * 96.38625 * 28 12 10 30 30 C 1.40390 * 119.36409 * 0.02562 * 5 4 3 31 31 C 1.37760 * 119.84870 * 180.26252 * 2 1 3 32 32 H 1.08994 * 109.47452 * 89.99897 * 1 2 3 33 33 H 1.09005 * 109.47038 * 209.99936 * 1 2 3 34 34 H 1.09007 * 109.47116 * 329.99509 * 1 2 3 35 35 H 1.08006 * 119.68292 * 0.02562 * 3 2 1 36 36 H 1.07996 * 120.03562 * 180.27889 * 4 3 2 37 37 H 1.08005 * 125.11826 * 180.02562 * 8 6 5 38 38 H 1.09003 * 113.52916 * 266.04367 * 13 12 10 39 39 H 1.08997 * 113.53716 * 36.67936 * 13 12 10 40 40 H 1.08991 * 109.52131 * 262.31986 * 16 14 13 41 41 H 1.09002 * 109.51534 * 22.42660 * 16 14 13 42 42 H 1.09005 * 109.70018 * 61.28025 * 17 16 14 43 43 H 1.09000 * 109.70867 * 181.86136 * 17 16 14 44 44 H 0.96997 * 120.00027 * 180.02562 * 22 21 19 45 45 H 1.09000 * 108.79030 * 80.89339 * 27 18 17 46 46 H 1.08997 * 108.78705 * 199.22388 * 27 18 17 47 47 H 1.08001 * 120.16660 * 359.96626 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1976 1.2034 0.0000 4 6 3.5751 1.2223 0.0051 5 6 4.2857 0.0262 0.0052 6 7 5.6327 -0.2718 0.0090 7 1 6.3451 0.3866 0.0122 8 6 5.8202 -1.6134 0.0065 9 6 4.6130 -2.2478 0.0003 10 6 4.3821 -3.6986 -0.0037 11 8 3.2458 -4.1338 -0.0087 12 7 5.4288 -4.5477 -0.0021 13 6 6.8973 -4.4343 0.0035 14 6 6.9345 -5.7883 0.7380 15 1 7.7435 -6.4542 0.4376 16 6 6.8141 -5.6052 2.2528 17 6 5.9612 -6.7380 2.8313 18 7 4.6490 -6.7031 2.1799 19 6 3.5157 -6.5938 2.9405 20 1 3.5638 -6.1391 3.9190 21 6 2.3049 -7.0674 2.4541 22 7 2.2830 -7.8660 1.4080 23 14 0.7066 -6.5715 3.2842 24 1 1.0016 -5.6744 4.4302 25 1 -0.1582 -5.8609 2.3084 26 1 0.0059 -7.7857 3.7743 27 6 4.5407 -6.7844 0.7291 28 6 5.6199 -5.9998 0.0020 29 1 5.7830 -6.3830 -1.0054 30 6 3.5854 -1.1905 -0.0006 31 6 2.1926 -1.1948 -0.0055 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5139 35 1 1.6500 2.1343 0.0004 36 1 4.1028 2.1645 0.0096 37 1 6.7811 -2.1064 0.0090 38 1 7.3400 -4.4671 -0.9921 39 1 7.2674 -3.6033 0.6038 40 1 7.8066 -5.6305 2.7027 41 1 6.3415 -4.6466 2.4673 42 1 6.4426 -7.6965 2.6371 43 1 5.8427 -6.5971 3.9057 44 1 1.4369 -8.1966 1.0679 45 1 4.6198 -7.8294 0.4292 46 1 3.5636 -6.4064 0.4284 47 1 1.6528 -2.1303 -0.0092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084857076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:37 Heat of formation + Delta-G solvation = 97.143547 kcal Electronic energy + Delta-G solvation = -30262.019450 eV Core-core repulsion = 26412.464139 eV Total energy + Delta-G solvation = -3849.555311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39902 -40.28896 -37.42682 -37.13723 -35.13351 -32.20883 -31.98463 -31.32345 -30.08340 -29.71377 -27.93750 -26.90175 -26.34400 -23.86967 -23.40207 -22.55162 -22.09818 -20.96065 -20.80063 -19.25178 -18.14168 -17.50205 -16.56267 -16.26406 -15.71480 -15.50760 -15.19570 -14.80879 -14.68049 -14.15802 -14.06986 -13.65413 -13.58660 -13.39187 -13.33130 -13.15725 -12.91009 -12.66448 -12.53356 -12.23059 -12.05817 -11.82784 -11.51690 -11.41614 -11.18860 -10.98019 -10.84408 -10.60530 -10.56745 -10.38517 -10.10125 -9.80322 -9.70086 -9.58209 -9.49976 -8.86216 -8.21887 -8.14100 -8.02864 -7.62503 -6.51005 -5.57463 -2.99146 1.08039 1.59009 2.23675 2.96032 3.40616 3.53472 3.61910 3.62658 3.76898 4.16526 4.62793 4.67379 4.71609 4.74403 4.87573 5.01539 5.16129 5.20903 5.31532 5.43155 5.47449 5.53435 5.55643 5.63891 5.66721 5.67486 5.72635 5.76341 5.84290 5.94060 6.08013 6.18283 6.19912 6.26706 6.40023 6.41713 6.43967 6.57108 6.59559 6.65389 6.78019 6.82670 6.85606 7.05453 7.16319 7.36523 7.59217 7.87377 8.04041 8.46678 8.66207 8.99545 9.44102 10.08407 10.55414 11.50647 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.004847 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.484942 B = 5775.670119 C = 7859.054741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C -0.099 4.099 4 C -0.130 4.130 5 C 0.080 3.920 6 N -0.584 5.584 7 H 0.416 0.584 8 C 0.089 3.911 9 C -0.203 4.203 10 C 0.612 3.388 11 O -0.514 6.514 12 N -0.631 5.631 13 C 0.089 3.911 14 C -0.112 4.112 15 H 0.090 0.910 16 C -0.115 4.115 17 C 0.149 3.851 18 N -0.584 5.584 19 C -0.251 4.251 20 H 0.062 0.938 21 C 0.012 3.988 22 N -0.903 5.903 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.288 1.288 26 H -0.293 1.293 27 C 0.168 3.832 28 C 0.119 3.881 29 H 0.073 0.927 30 C -0.059 4.059 31 C -0.057 4.057 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.179 0.821 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.251 0.749 45 H 0.026 0.974 46 H 0.106 0.894 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.703 16.787 -5.414 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.115 4.115 3 C -0.118 4.118 4 C -0.150 4.150 5 C -0.025 4.025 6 N -0.186 5.186 7 H 0.253 0.747 8 C -0.042 4.042 9 C -0.213 4.213 10 C 0.402 3.598 11 O -0.390 6.390 12 N -0.368 5.368 13 C -0.035 4.035 14 C -0.131 4.131 15 H 0.108 0.892 16 C -0.155 4.155 17 C 0.022 3.978 18 N -0.306 5.306 19 C -0.380 4.380 20 H 0.079 0.921 21 C -0.186 4.186 22 N -0.548 5.548 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.214 1.214 26 H -0.220 1.220 27 C 0.042 3.958 28 C 0.015 3.985 29 H 0.091 0.909 30 C -0.064 4.064 31 C -0.076 4.076 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.195 0.805 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.044 0.956 46 H 0.124 0.876 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.790 16.694 -5.497 20.119 hybrid contribution -0.209 0.670 0.235 0.740 sum 9.581 17.364 -5.262 20.518 Atomic orbital electron populations 1.20719 0.91118 1.02682 1.02056 1.19706 0.96097 0.92547 1.03141 1.20653 0.92812 0.97469 1.00852 1.19900 0.93770 0.94406 1.06965 1.18233 0.83081 0.95339 1.05812 1.41475 1.06076 1.06773 1.64271 0.74728 1.22396 0.99424 0.82420 0.99966 1.20246 0.91856 0.92816 1.16430 1.16527 0.83316 0.83296 0.76667 1.90855 1.21029 1.77734 1.49341 1.49252 1.04957 1.08597 1.73975 1.23439 0.81949 0.98523 0.99577 1.22680 0.97898 0.95916 0.96597 0.89180 1.21837 0.99304 1.01662 0.92686 1.20711 0.87106 0.94057 0.95952 1.43445 1.00701 1.85399 1.01044 1.19113 0.86236 1.32393 1.00261 0.92058 1.24893 0.98253 0.97200 0.98276 1.70014 1.24649 1.33816 1.26338 0.86269 0.84422 0.77606 0.78712 1.20542 1.21430 1.22025 1.20359 0.97303 0.95359 0.82763 1.22771 0.95984 0.81294 0.98409 0.90903 1.18749 0.93036 0.90607 1.03991 1.20682 0.91966 0.98399 0.96508 0.91519 0.91355 0.91893 0.85854 0.86358 0.80463 0.90491 0.91361 0.92770 0.92083 0.96337 0.92700 0.93914 0.95598 0.87626 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.00 36.00 0.36 -0.91 16 2 C -0.11 -1.61 5.88 -104.61 -0.62 -2.22 16 3 C -0.10 -1.18 9.66 -39.56 -0.38 -1.56 16 4 C -0.13 -1.51 10.07 -39.43 -0.40 -1.91 16 5 C 0.08 1.10 7.26 -83.97 -0.61 0.49 16 6 N -0.58 -6.25 5.99 -10.49 -0.06 -6.31 16 7 H 0.42 2.71 8.96 -40.82 -0.37 2.34 16 8 C 0.09 1.11 11.05 -16.62 -0.18 0.93 16 9 C -0.20 -3.56 6.27 -103.31 -0.65 -4.21 16 10 C 0.61 13.03 7.97 -12.75 -0.10 12.93 16 11 O -0.51 -13.54 15.34 5.21 0.08 -13.46 16 12 N -0.63 -11.69 3.37 -188.85 -0.64 -12.32 16 13 C 0.09 1.14 6.51 -11.54 -0.08 1.06 16 14 C -0.11 -1.68 4.52 -90.47 -0.41 -2.09 16 15 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.12 -1.91 5.71 -26.62 -0.15 -2.07 16 17 C 0.15 3.11 6.46 -3.94 -0.03 3.08 16 18 N -0.58 -15.20 3.03 -174.38 -0.53 -15.72 16 19 C -0.25 -7.34 9.53 -15.06 -0.14 -7.48 16 20 H 0.06 1.79 7.83 -52.48 -0.41 1.37 16 21 C 0.01 0.37 4.94 -17.43 -0.09 0.28 16 22 N -0.90 -27.94 10.94 55.49 0.61 -27.33 16 23 Si 0.90 23.92 29.58 -169.99 -5.03 18.89 16 24 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 26 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 27 C 0.17 4.26 4.58 -5.00 -0.02 4.24 16 28 C 0.12 2.30 4.12 -77.41 -0.32 1.98 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 C -0.06 -1.03 6.27 -104.95 -0.66 -1.69 16 31 C -0.06 -1.00 9.50 -39.37 -0.37 -1.37 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.18 1.64 5.07 -52.48 -0.27 1.38 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.73 6.03 -51.93 -0.31 0.42 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.13 7.70 -51.93 -0.40 0.73 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 1.14 7.87 -51.93 -0.41 0.73 16 44 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.03 0.71 7.99 -51.93 -0.42 0.29 16 46 H 0.11 3.16 4.88 -51.93 -0.25 2.91 16 47 H 0.14 2.67 7.45 -52.49 -0.39 2.28 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -37.34 373.09 -11.37 -48.70 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.58 Total: 2.45 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -4.84 Total: -0.51 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.62 Total: -61.69 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.03 Total: 18.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.34 -11.37 -48.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084857076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.846 kcal (2) G-P(sol) polarization free energy of solvation -37.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds