Wall clock time and date at job start Tue Mar 31 2020 22:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38750 * 119.85205 * 2 1 4 4 C 1.37767 * 120.63598 * 179.75154 * 3 2 1 5 5 C 1.39118 * 119.92991 * 0.24886 * 4 3 2 6 6 N 1.37963 * 133.18908 * 179.97438 * 5 4 3 7 7 H 0.97007 * 124.77935 * 359.96453 * 6 5 4 8 8 C 1.35461 * 110.42966 * 180.02562 * 6 5 4 9 9 C 1.36374 * 109.76842 * 0.02562 * 8 6 5 10 10 C 1.46913 * 126.76797 * 180.02562 * 9 8 6 11 11 O 1.21674 * 119.99944 * 179.97438 * 10 9 8 12 12 N 1.34781 * 120.00271 * 359.95514 * 10 9 8 13 13 C 1.47283 * 136.53781 * 0.02562 * 12 10 9 14 14 C 1.54083 * 87.60623 * 151.36453 * 13 12 10 15 15 H 1.08999 * 115.04946 * 141.62870 * 14 13 12 16 16 C 1.53061 * 111.39028 * 273.09410 * 14 13 12 17 17 C 1.53153 * 109.21490 * 142.39427 * 16 14 13 18 18 N 1.46539 * 108.25143 * 301.59272 * 17 16 14 19 19 C 1.36930 * 119.74071 * 236.39589 * 18 17 16 20 20 H 1.08003 * 119.99868 * 25.14865 * 19 18 17 21 21 C 1.38813 * 120.00165 * 205.15296 * 19 18 17 22 22 N 1.31623 * 120.00059 * 14.47234 * 21 19 18 23 23 Si 1.86799 * 120.00010 * 194.47142 * 21 19 18 24 24 H 1.48504 * 109.47244 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47393 * 120.00306 * 23 21 19 26 26 H 1.48510 * 109.47148 * 240.00205 * 23 21 19 27 27 C 1.45704 * 120.52252 * 56.42050 * 18 17 16 28 28 C 1.46462 * 136.54488 * 179.62669 * 12 10 9 29 29 H 1.09003 * 111.44245 * 96.38625 * 28 12 10 30 30 C 1.40390 * 119.36409 * 0.02562 * 5 4 3 31 31 C 1.37760 * 119.84870 * 180.26252 * 2 1 3 32 32 H 1.08994 * 109.47452 * 89.99897 * 1 2 3 33 33 H 1.09005 * 109.47038 * 209.99936 * 1 2 3 34 34 H 1.09007 * 109.47116 * 329.99509 * 1 2 3 35 35 H 1.08006 * 119.68292 * 0.02562 * 3 2 1 36 36 H 1.07996 * 120.03562 * 180.27889 * 4 3 2 37 37 H 1.08005 * 125.11826 * 180.02562 * 8 6 5 38 38 H 1.09003 * 113.52916 * 266.04367 * 13 12 10 39 39 H 1.08997 * 113.53716 * 36.67936 * 13 12 10 40 40 H 1.08991 * 109.52131 * 262.31986 * 16 14 13 41 41 H 1.09002 * 109.51534 * 22.42660 * 16 14 13 42 42 H 1.09005 * 109.70018 * 61.28025 * 17 16 14 43 43 H 1.09000 * 109.70867 * 181.86136 * 17 16 14 44 44 H 0.96997 * 120.00027 * 180.02562 * 22 21 19 45 45 H 1.09000 * 108.79030 * 80.89339 * 27 18 17 46 46 H 1.08997 * 108.78705 * 199.22388 * 27 18 17 47 47 H 1.08001 * 120.16660 * 359.96626 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1976 1.2034 0.0000 4 6 3.5751 1.2223 0.0051 5 6 4.2857 0.0262 0.0052 6 7 5.6327 -0.2718 0.0090 7 1 6.3451 0.3866 0.0122 8 6 5.8202 -1.6134 0.0065 9 6 4.6130 -2.2478 0.0003 10 6 4.3821 -3.6986 -0.0037 11 8 3.2458 -4.1338 -0.0087 12 7 5.4288 -4.5477 -0.0021 13 6 6.8973 -4.4343 0.0035 14 6 6.9345 -5.7883 0.7380 15 1 7.7435 -6.4542 0.4376 16 6 6.8141 -5.6052 2.2528 17 6 5.9612 -6.7380 2.8313 18 7 4.6490 -6.7031 2.1799 19 6 3.5157 -6.5938 2.9405 20 1 3.5638 -6.1391 3.9190 21 6 2.3049 -7.0674 2.4541 22 7 2.2830 -7.8660 1.4080 23 14 0.7066 -6.5715 3.2842 24 1 1.0016 -5.6744 4.4302 25 1 -0.1582 -5.8609 2.3084 26 1 0.0059 -7.7857 3.7743 27 6 4.5407 -6.7844 0.7291 28 6 5.6199 -5.9998 0.0020 29 1 5.7830 -6.3830 -1.0054 30 6 3.5854 -1.1905 -0.0006 31 6 2.1926 -1.1948 -0.0055 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5139 35 1 1.6500 2.1343 0.0004 36 1 4.1028 2.1645 0.0096 37 1 6.7811 -2.1064 0.0090 38 1 7.3400 -4.4671 -0.9921 39 1 7.2674 -3.6033 0.6038 40 1 7.8066 -5.6305 2.7027 41 1 6.3415 -4.6466 2.4673 42 1 6.4426 -7.6965 2.6371 43 1 5.8427 -6.5971 3.9057 44 1 1.4369 -8.1966 1.0679 45 1 4.6198 -7.8294 0.4292 46 1 3.5636 -6.4064 0.4284 47 1 1.6528 -2.1303 -0.0092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084857076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:36 Heat of formation + Delta-G solvation = 70.670440 kcal Electronic energy + Delta-G solvation = -30263.167410 eV Core-core repulsion = 26412.464139 eV Total energy + Delta-G solvation = -3850.703271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.48921 -41.63951 -38.84096 -38.34298 -37.03082 -33.99842 -33.18835 -32.36716 -31.89186 -31.09472 -29.30987 -28.53847 -27.39459 -25.72320 -24.86825 -23.65111 -23.43814 -22.39809 -22.00718 -20.57515 -19.53787 -19.02730 -18.08538 -17.51180 -17.30207 -16.86598 -16.64952 -16.17048 -15.88935 -15.78869 -15.49414 -15.16618 -14.91266 -14.75679 -14.66689 -14.50941 -14.28641 -14.14324 -13.96078 -13.67899 -13.42365 -13.15212 -13.04071 -12.76289 -12.69717 -12.54271 -12.26861 -12.19667 -12.16665 -11.96223 -11.91559 -11.71435 -11.45858 -11.05898 -10.71891 -10.67748 -10.32649 -9.48030 -9.16321 -8.71664 -8.65756 -7.85947 -5.28936 0.01008 0.53053 1.07807 1.29642 1.38188 1.42806 1.97018 2.15454 2.45971 2.52945 2.92764 3.29539 3.46317 3.65699 3.69691 3.75307 3.83863 4.00493 4.03233 4.23670 4.26238 4.32558 4.38176 4.50151 4.54076 4.57246 4.67199 4.72096 4.73061 4.77331 4.78990 4.85643 4.92322 5.00182 5.06166 5.09861 5.15373 5.18631 5.35144 5.38505 5.46208 5.52799 5.55802 5.62659 5.74014 5.78483 5.86709 6.12129 6.40009 6.60147 7.07421 7.19295 7.51936 7.97711 8.34634 9.17917 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.004847 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.484942 B = 5775.670119 C = 7859.054741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.111 4.111 3 C -0.103 4.103 4 C -0.108 4.108 5 C 0.073 3.927 6 N -0.556 5.556 7 H 0.443 0.557 8 C 0.142 3.858 9 C -0.268 4.268 10 C 0.598 3.402 11 O -0.597 6.597 12 N -0.639 5.639 13 C 0.102 3.898 14 C -0.099 4.099 15 H 0.134 0.866 16 C -0.104 4.104 17 C 0.138 3.862 18 N -0.601 5.601 19 C -0.253 4.253 20 H 0.057 0.943 21 C -0.044 4.044 22 N -0.931 5.931 23 Si 0.950 3.050 24 H -0.269 1.269 25 H -0.306 1.306 26 H -0.279 1.279 27 C 0.181 3.819 28 C 0.103 3.897 29 H 0.090 0.910 30 C -0.095 4.095 31 C -0.111 4.111 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.222 0.778 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.040 0.960 42 H 0.028 0.972 43 H 0.048 0.952 44 H 0.243 0.757 45 H -0.010 1.010 46 H 0.048 0.952 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.792 21.230 -5.334 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.112 4.112 3 C -0.122 4.122 4 C -0.128 4.128 5 C -0.032 4.032 6 N -0.159 5.159 7 H 0.285 0.715 8 C 0.007 3.993 9 C -0.279 4.279 10 C 0.392 3.608 11 O -0.478 6.478 12 N -0.374 5.374 13 C -0.018 4.018 14 C -0.118 4.118 15 H 0.152 0.848 16 C -0.143 4.143 17 C 0.013 3.987 18 N -0.324 5.324 19 C -0.384 4.384 20 H 0.075 0.925 21 C -0.239 4.239 22 N -0.578 5.578 23 Si 0.780 3.220 24 H -0.193 1.193 25 H -0.234 1.234 26 H -0.206 1.206 27 C 0.055 3.945 28 C -0.001 4.001 29 H 0.108 0.892 30 C -0.099 4.099 31 C -0.130 4.130 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.181 0.819 36 H 0.184 0.816 37 H 0.238 0.762 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.007 0.993 46 H 0.067 0.933 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.996 21.188 -5.390 26.512 hybrid contribution -1.739 -0.688 0.227 1.884 sum 13.257 20.500 -5.164 24.953 Atomic orbital electron populations 1.20779 0.90071 1.02962 1.02822 1.20017 0.97152 0.92455 1.01559 1.21082 0.93499 0.97556 1.00081 1.20451 0.93689 0.95319 1.03381 1.18369 0.84068 0.94550 1.06199 1.41422 1.05749 1.06752 1.61992 0.71466 1.22774 0.98912 0.82730 0.94835 1.20070 0.94438 0.90938 1.22408 1.17256 0.82832 0.85236 0.75513 1.90808 1.24377 1.79323 1.53306 1.49393 1.07436 1.07762 1.72814 1.23725 0.77811 0.98145 1.02143 1.22708 0.95659 0.98235 0.95160 0.84817 1.21719 1.00407 0.98121 0.94012 1.20991 0.85429 0.96564 0.95724 1.43679 1.01870 1.85540 1.01344 1.19386 0.87880 1.30848 1.00251 0.92481 1.25564 1.01003 0.98047 0.99331 1.70177 1.24415 1.35403 1.27839 0.85451 0.81239 0.77621 0.77718 1.19307 1.23443 1.20572 1.19939 0.97314 0.94140 0.83156 1.22816 0.96381 0.81641 0.99301 0.89207 1.19098 0.93203 0.92791 1.04817 1.20527 0.93072 0.97791 1.01658 0.90482 0.93699 0.88863 0.81928 0.81646 0.76217 0.86154 0.87932 0.87713 0.94108 0.95393 0.93302 0.94806 0.99262 0.93325 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 10.00 71.23 0.71 -1.98 16 2 C -0.11 -3.25 5.88 -19.86 -0.12 -3.37 16 3 C -0.10 -2.18 9.66 22.28 0.22 -1.97 16 4 C -0.11 -2.07 10.07 22.37 0.23 -1.85 16 5 C 0.07 1.82 7.26 38.91 0.28 2.10 16 6 N -0.56 -9.23 5.99 -187.09 -1.12 -10.35 16 7 H 0.44 2.81 8.96 -92.70 -0.83 1.98 16 8 C 0.14 3.00 11.05 83.70 0.92 3.92 16 9 C -0.27 -9.55 6.27 -19.02 -0.12 -9.67 16 10 C 0.60 27.19 7.97 86.51 0.69 27.88 16 11 O -0.60 -35.52 15.34 -4.27 -0.07 -35.59 16 12 N -0.64 -23.51 3.37 -869.61 -2.93 -26.44 16 13 C 0.10 2.09 6.51 81.09 0.53 2.62 16 14 C -0.10 -2.56 4.52 -10.69 -0.05 -2.61 16 15 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.10 -3.08 5.71 30.67 0.18 -2.91 16 17 C 0.14 5.71 6.46 86.42 0.56 6.27 16 18 N -0.60 -32.87 3.03 -705.60 -2.14 -35.00 16 19 C -0.25 -15.75 9.53 84.03 0.80 -14.94 16 20 H 0.06 3.51 7.83 -2.91 -0.02 3.48 16 21 C -0.04 -2.85 4.94 84.86 0.42 -2.43 16 22 N -0.93 -62.59 10.94 21.65 0.24 -62.35 16 23 Si 0.95 52.84 29.58 68.60 2.03 54.87 16 24 H -0.27 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.31 -17.82 7.11 99.48 0.71 -17.12 16 26 H -0.28 -14.75 7.11 99.48 0.71 -14.04 16 27 C 0.18 9.84 4.58 86.19 0.39 10.23 16 28 C 0.10 4.00 4.12 38.87 0.16 4.16 16 29 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 30 C -0.09 -3.43 6.27 -20.08 -0.13 -3.56 16 31 C -0.11 -4.37 9.50 22.41 0.21 -4.16 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.28 8.08 -2.38 -0.02 1.26 16 34 H 0.09 1.68 8.08 -2.38 -0.02 1.66 16 35 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.22 2.55 5.07 -2.91 -0.01 2.54 16 38 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.10 1.43 6.03 -2.39 -0.01 1.42 16 40 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.04 1.39 7.70 -2.39 -0.02 1.37 16 42 H 0.03 1.11 8.14 -2.38 -0.02 1.10 16 43 H 0.05 2.03 7.87 -2.39 -0.02 2.01 16 44 H 0.24 15.97 8.31 -92.71 -0.77 15.20 16 45 H -0.01 -0.61 7.99 -2.39 -0.02 -0.63 16 46 H 0.05 3.21 4.88 -2.39 -0.01 3.20 16 47 H 0.08 3.96 7.45 -2.91 -0.02 3.94 16 Total: -1.00 -100.70 373.09 2.08 -98.62 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.18 Total: 8.49 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 5.89 Total: 7.75 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -5.95 Total: -134.14 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.07 Total: -35.59 kcal Atomic # 14 Polarization: 52.84 SS G_CDS: 2.03 Total: 54.87 kcal Total: -100.70 2.08 -98.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084857076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.293 kcal (2) G-P(sol) polarization free energy of solvation -100.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds