Wall clock time and date at job start Tue Mar 31 2020 22:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36617 * 120.91681 * 2 1 4 4 C 1.39277 * 119.90112 * 180.02562 * 3 2 1 5 5 N 1.31144 * 121.77190 * 359.94274 * 4 3 2 6 6 C 1.33622 * 121.39379 * 0.02562 * 5 4 3 7 7 C 1.40764 * 120.83653 * 180.02562 * 6 5 4 8 8 C 1.35701 * 120.11009 * 179.97438 * 7 6 5 9 9 C 1.40634 * 120.92697 * 0.05041 * 8 7 6 10 10 C 1.47769 * 119.79893 * 179.97438 * 9 8 7 11 11 O 1.21565 * 119.99336 * 148.57060 * 10 9 8 12 12 N 1.34775 * 120.00506 * 328.56768 * 10 9 8 13 13 C 1.46504 * 119.99494 * 3.57701 * 12 10 9 14 14 C 1.46494 * 120.00132 * 183.58358 * 12 10 9 15 15 C 1.52993 * 109.47554 * 84.89689 * 14 12 10 16 16 H 1.08995 * 112.96716 * 294.24366 * 15 14 12 17 17 C 1.53949 * 113.76899 * 65.92361 * 15 14 12 18 18 C 1.53946 * 86.29087 * 137.90757 * 17 15 14 19 19 N 1.47585 * 113.77131 * 162.56224 * 15 14 12 20 20 C 1.36939 * 134.48867 * 41.07096 * 19 15 14 21 21 H 1.07994 * 119.99953 * 4.67354 * 20 19 15 22 22 C 1.38812 * 119.99860 * 184.67744 * 20 19 15 23 23 N 1.31618 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00008 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47680 * 59.99556 * 24 22 20 26 26 H 1.48504 * 109.47248 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47140 * 299.99544 * 24 22 20 28 28 C 1.38547 * 120.39409 * 359.67748 * 9 8 7 29 29 C 1.40186 * 119.39948 * 0.56448 * 28 9 8 30 30 H 1.09006 * 109.46842 * 270.03888 * 1 2 3 31 31 H 1.08994 * 109.46908 * 30.03883 * 1 2 3 32 32 H 1.08997 * 109.46777 * 150.04469 * 1 2 3 33 33 H 1.07997 * 120.05179 * 0.02562 * 3 2 1 34 34 H 1.07994 * 119.11193 * 179.97438 * 4 3 2 35 35 H 1.08004 * 119.94841 * 359.97438 * 7 6 5 36 36 H 1.08003 * 119.53306 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.46661 * 94.56809 * 13 12 10 38 38 H 1.08999 * 109.46886 * 214.56228 * 13 12 10 39 39 H 1.09001 * 109.47430 * 334.56584 * 13 12 10 40 40 H 1.09000 * 109.46815 * 204.89932 * 14 12 10 41 41 H 1.09008 * 109.46888 * 324.89407 * 14 12 10 42 42 H 1.09000 * 113.74371 * 252.25588 * 17 15 14 43 43 H 1.09006 * 113.74102 * 23.45476 * 17 15 14 44 44 H 1.08998 * 113.76875 * 90.69971 * 18 17 15 45 45 H 1.09005 * 113.76807 * 221.97653 * 18 17 15 46 46 H 0.97007 * 120.00047 * 180.02562 * 23 22 20 47 47 H 1.08004 * 120.29864 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2090 1.1721 0.0000 4 6 3.6015 1.1474 -0.0005 5 7 4.2722 0.0204 0.0001 6 6 3.6480 -1.1611 0.0007 7 6 4.3796 -2.3637 0.0019 8 6 3.7305 -3.5554 0.0031 9 6 2.3253 -3.6131 0.0021 10 6 1.6442 -4.9244 0.0028 11 8 0.5664 -5.0491 0.5511 12 7 2.2177 -5.9821 -0.6044 13 6 3.5512 -5.8521 -1.1970 14 6 1.5076 -7.2617 -0.6720 15 6 0.5687 -7.2608 -1.8799 16 1 -0.2393 -6.5348 -1.7900 17 6 1.2995 -7.2114 -3.2339 18 6 0.2774 -8.2592 -3.7107 19 7 0.1168 -8.6067 -2.2831 20 6 -0.2874 -9.7262 -1.6059 21 1 -0.3891 -9.6998 -0.5310 22 6 -0.5664 -10.8949 -2.3009 23 7 -0.4428 -10.9269 -3.6109 24 14 -1.1185 -12.4218 -1.3773 25 1 -2.3777 -12.1299 -0.6462 26 1 -1.3514 -13.5267 -2.3418 27 1 -0.0658 -12.8226 -0.4096 28 6 1.5759 -2.4478 0.0066 29 6 2.2309 -1.2083 0.0001 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3633 -0.8904 -0.5131 33 1 1.6849 2.1163 0.0004 34 1 4.1436 2.0814 -0.0010 35 1 5.4593 -2.3379 0.0019 36 1 4.3010 -4.4724 0.0044 37 1 4.3018 -6.1797 -0.4777 38 1 3.6125 -6.4699 -2.0929 39 1 3.7314 -4.8100 -1.4612 40 1 2.2290 -8.0726 -0.7731 41 1 0.9270 -7.4036 0.2396 42 1 1.2146 -6.2517 -3.7437 43 1 2.3239 -7.5818 -3.1935 44 1 -0.6173 -7.8277 -4.1594 45 1 0.7135 -9.0558 -4.3135 46 1 -0.6382 -11.7436 -4.0967 47 1 0.4968 -2.4939 0.0062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085617357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:41 Heat of formation + Delta-G solvation = 76.857375 kcal Electronic energy + Delta-G solvation = -28772.715583 eV Core-core repulsion = 24922.280598 eV Total energy + Delta-G solvation = -3850.434986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.14978 -41.06920 -39.57756 -37.82061 -36.61546 -35.64679 -34.24522 -32.18043 -31.48225 -29.90736 -29.86458 -28.76477 -27.70737 -25.67275 -25.29627 -24.55651 -23.85235 -22.05850 -21.22094 -20.80377 -19.53270 -18.70532 -18.30579 -17.77525 -17.17198 -16.99234 -16.72191 -16.46951 -15.92990 -15.68767 -15.50332 -15.29958 -15.16860 -15.00718 -14.54714 -14.20815 -14.02349 -13.98623 -13.86288 -13.77851 -13.52258 -13.35993 -13.19596 -12.92107 -12.78266 -12.65277 -12.55404 -12.40793 -12.30964 -12.00423 -11.80585 -11.59463 -11.37059 -11.16547 -10.99203 -10.83648 -10.50522 -9.82084 -9.71572 -9.23332 -8.91052 -7.89434 -5.24390 -0.79928 -0.33347 0.84887 1.39993 1.43976 1.47433 1.53311 1.81642 2.18228 2.48065 3.04003 3.25124 3.29627 3.37805 3.46222 3.50008 3.66255 3.78686 3.85683 3.97720 4.02085 4.12898 4.24662 4.26437 4.36735 4.45960 4.49658 4.51242 4.62432 4.68340 4.75307 4.76288 4.84417 4.87560 4.88990 4.95977 5.00189 5.02717 5.05118 5.12277 5.19473 5.22432 5.33476 5.42078 5.52462 5.56112 5.70599 5.77594 5.95170 6.33876 6.89896 6.92319 7.04235 7.60823 8.56856 9.26168 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.002338 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.303230 B =11975.420737 C =12270.537938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.025 4.025 3 C -0.179 4.179 4 C 0.143 3.857 5 N -0.508 5.508 6 C 0.127 3.873 7 C -0.100 4.100 8 C -0.084 4.084 9 C -0.139 4.139 10 C 0.550 3.450 11 O -0.583 6.583 12 N -0.594 5.594 13 C 0.049 3.951 14 C 0.135 3.865 15 C 0.131 3.869 16 H 0.025 0.975 17 C -0.122 4.122 18 C 0.147 3.853 19 N -0.628 5.628 20 C -0.233 4.233 21 H 0.076 0.924 22 C -0.064 4.064 23 N -0.951 5.951 24 Si 0.976 3.024 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.272 1.272 28 C -0.038 4.038 29 C -0.129 4.129 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.173 0.827 34 H 0.194 0.806 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.009 0.991 45 H 0.053 0.947 46 H 0.249 0.751 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.553 26.754 5.667 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.032 4.032 3 C -0.199 4.199 4 C -0.028 4.028 5 N -0.217 5.217 6 C 0.006 3.994 7 C -0.119 4.119 8 C -0.104 4.104 9 C -0.142 4.142 10 C 0.340 3.660 11 O -0.464 6.464 12 N -0.325 5.325 13 C -0.091 4.091 14 C 0.011 3.989 15 C 0.024 3.976 16 H 0.043 0.957 17 C -0.160 4.160 18 C 0.022 3.978 19 N -0.355 5.355 20 C -0.361 4.361 21 H 0.094 0.906 22 C -0.257 4.257 23 N -0.600 5.600 24 Si 0.804 3.196 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.198 1.198 28 C -0.058 4.058 29 C -0.131 4.131 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.191 0.809 34 H 0.211 0.789 35 H 0.179 0.821 36 H 0.192 0.808 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.027 0.973 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.848 26.214 5.966 29.797 hybrid contribution -2.013 -1.295 0.276 2.410 sum 10.835 24.919 6.242 27.880 Atomic orbital electron populations 1.20999 0.88562 1.04539 1.04036 1.20587 0.97888 0.91936 0.92836 1.22157 0.95511 0.99582 1.02612 1.23671 0.92280 0.96977 0.89876 1.68132 1.40485 0.98182 1.14927 1.19316 0.89768 0.93535 0.96748 1.20948 1.01479 0.89182 1.00270 1.21747 0.92027 1.00422 0.96154 1.19800 0.95139 0.91984 1.07289 1.18760 0.84474 0.84730 0.78022 1.90771 1.23699 1.85138 1.46824 1.47703 1.19274 1.10056 1.55421 1.22872 0.81449 1.05010 0.99798 1.21371 0.95381 0.84465 0.97720 1.22566 0.93749 0.86455 0.94857 0.95718 1.23516 0.98940 0.98489 0.95052 1.22290 0.94213 0.94310 0.87013 1.46454 1.77757 1.07973 1.03328 1.19294 1.37836 0.87867 0.91096 0.90609 1.25579 1.02940 1.00596 0.96576 1.69994 1.55834 1.27460 1.06673 0.85200 0.78277 0.78858 0.77284 1.21024 1.21775 1.19810 1.21444 1.00307 0.90354 0.93710 1.18814 0.94550 0.94205 1.05520 0.89297 0.88142 0.91529 0.80938 0.78895 0.82095 0.80810 0.89252 0.89926 0.87781 0.88999 0.93140 0.90485 0.88763 0.97345 0.92866 0.94223 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.59 71.24 0.68 -0.85 16 2 C -0.02 -0.40 5.92 -19.60 -0.12 -0.51 16 3 C -0.18 -2.05 9.72 22.14 0.22 -1.84 16 4 C 0.14 1.86 11.14 85.05 0.95 2.80 16 5 N -0.51 -9.84 10.33 -188.46 -1.95 -11.79 16 6 C 0.13 2.69 6.61 40.37 0.27 2.96 16 7 C -0.10 -1.79 9.95 22.30 0.22 -1.57 16 8 C -0.08 -1.53 7.32 22.27 0.16 -1.37 16 9 C -0.14 -3.47 5.47 -20.10 -0.11 -3.58 16 10 C 0.55 17.53 7.40 86.76 0.64 18.17 16 11 O -0.58 -23.98 16.34 -3.92 -0.06 -24.04 16 12 N -0.59 -17.00 2.79 -850.29 -2.37 -19.36 16 13 C 0.05 0.88 8.58 127.77 1.10 1.98 16 14 C 0.13 4.95 5.31 86.38 0.46 5.41 16 15 C 0.13 5.57 4.54 45.09 0.20 5.78 16 16 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 17 C -0.12 -4.47 7.18 31.25 0.22 -4.25 16 18 C 0.15 7.16 7.64 86.44 0.66 7.82 16 19 N -0.63 -33.18 3.58 -690.92 -2.48 -35.65 16 20 C -0.23 -13.41 10.51 84.03 0.88 -12.52 16 21 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 22 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 23 N -0.95 -58.03 11.32 21.65 0.25 -57.78 16 24 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 25 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 27 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 28 C -0.04 -0.94 8.88 22.82 0.20 -0.73 16 29 C -0.13 -2.76 5.74 -21.29 -0.12 -2.88 16 30 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.10 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.07 0.98 6.52 -2.39 -0.02 0.96 16 33 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.17 2.23 4.71 -2.91 -0.01 2.22 16 37 H 0.09 1.14 7.38 -2.39 -0.02 1.12 16 38 H 0.08 1.46 6.43 -2.39 -0.02 1.45 16 39 H 0.10 1.53 4.75 -2.39 -0.01 1.52 16 40 H 0.09 3.27 8.03 -2.39 -0.02 3.25 16 41 H 0.05 2.12 7.53 -2.38 -0.02 2.10 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.09 3.08 6.89 -2.38 -0.02 3.07 16 44 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.05 2.85 6.98 -2.38 -0.02 2.83 16 46 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 47 H 0.13 3.36 6.30 -2.91 -0.02 3.34 16 Total: -1.00 -79.80 378.75 3.40 -76.39 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 1.00 Total: 11.87 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.99 Total: 11.59 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -6.55 Total: -124.59 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -79.80 3.40 -76.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085617357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.251 kcal (2) G-P(sol) polarization free energy of solvation -79.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds