Wall clock time and date at job start Tue Mar 31 2020 22:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30828 * 119.22443 * 2 1 4 4 C 1.33797 * 121.71290 * 180.02562 * 3 2 1 5 5 C 1.40530 * 120.81953 * 179.97438 * 4 3 2 6 6 C 1.36129 * 119.81492 * 180.02562 * 5 4 3 7 7 C 1.39343 * 121.09449 * 359.97438 * 6 5 4 8 8 C 1.36139 * 120.83739 * 0.04229 * 7 6 5 9 9 C 1.40552 * 119.61805 * 359.95991 * 8 7 6 10 10 C 1.40490 * 121.22844 * 179.97438 * 9 8 7 11 11 C 1.39049 * 117.96308 * 180.02562 * 10 9 8 12 12 C 1.47757 * 120.26720 * 179.97438 * 11 10 9 13 13 O 1.21563 * 119.99925 * 126.51760 * 12 11 10 14 14 N 1.34782 * 120.00049 * 306.50640 * 12 11 10 15 15 C 1.46503 * 119.99742 * 4.45348 * 14 12 11 16 16 C 1.46496 * 119.99825 * 184.44643 * 14 12 11 17 17 C 1.53004 * 109.46797 * 91.71683 * 16 14 12 18 18 H 1.08994 * 112.96568 * 64.77683 * 17 16 14 19 19 C 1.53944 * 113.76587 * 293.09507 * 17 16 14 20 20 C 1.53949 * 86.28885 * 222.09297 * 19 17 16 21 21 N 1.47580 * 86.11650 * 23.60811 * 20 19 17 22 22 C 1.36940 * 134.49085 * 155.35849 * 21 20 19 23 23 H 1.07994 * 119.99675 * 185.41075 * 22 21 20 24 24 C 1.38813 * 120.00059 * 5.40175 * 22 21 20 25 25 N 1.31619 * 119.99804 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 119.99855 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47257 * 60.00585 * 26 24 22 28 28 H 1.48502 * 109.47391 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47586 * 300.00443 * 26 24 22 30 30 H 1.08999 * 109.47067 * 85.84445 * 1 2 3 31 31 H 1.08999 * 109.46957 * 205.84151 * 1 2 3 32 32 H 1.08999 * 109.47133 * 325.84308 * 1 2 3 33 33 H 1.08002 * 120.09136 * 0.04779 * 5 4 3 34 34 H 1.08000 * 119.45370 * 180.02562 * 6 5 4 35 35 H 1.07996 * 119.58414 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.19058 * 179.97438 * 8 7 6 37 37 H 1.08003 * 121.02391 * 359.97438 * 10 9 8 38 38 H 1.09001 * 109.46942 * 93.39335 * 15 14 12 39 39 H 1.08995 * 109.46777 * 213.38975 * 15 14 12 40 40 H 1.08995 * 109.47166 * 333.39076 * 15 14 12 41 41 H 1.09003 * 109.47003 * 211.71070 * 16 14 12 42 42 H 1.08993 * 109.47538 * 331.71403 * 16 14 12 43 43 H 1.08998 * 113.74494 * 336.43760 * 19 17 16 44 44 H 1.08998 * 113.74403 * 107.64534 * 19 17 16 45 45 H 1.08998 * 113.76731 * 137.91300 * 20 19 17 46 46 H 1.09000 * 113.77312 * 269.19343 * 20 19 17 47 47 H 0.97003 * 119.99397 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1418 0.0000 4 6 3.4825 1.1999 -0.0005 5 6 4.1494 2.4368 -0.0010 6 6 5.5102 2.4721 -0.0021 7 6 6.2605 1.2979 -0.0021 8 6 5.6513 0.0804 -0.0019 9 6 4.2477 0.0060 -0.0009 10 6 3.5840 -1.2322 -0.0012 11 6 2.1935 -1.2265 -0.0007 12 6 1.4436 -2.4997 -0.0016 13 8 0.5956 -2.7062 0.8446 14 7 1.6995 -3.4319 -0.9408 15 6 2.7869 -3.2254 -1.9006 16 6 0.8905 -4.6517 -1.0016 17 6 -0.2860 -4.4362 -1.9557 18 1 0.0268 -4.2782 -2.9878 19 6 -1.3114 -3.4038 -1.4531 20 6 -2.3908 -4.3817 -1.9515 21 7 -1.3646 -5.4321 -1.8044 22 6 -1.3994 -6.7867 -1.6068 23 1 -0.4817 -7.3322 -1.4435 24 6 -2.6140 -7.4586 -1.6163 25 7 -3.7323 -6.7937 -1.8157 26 14 -2.6613 -9.3065 -1.3475 27 1 -2.0838 -9.6282 -0.0178 28 1 -4.0679 -9.7792 -1.4042 29 1 -1.8697 -9.9814 -2.4073 30 1 -0.3633 0.0745 -1.0250 31 1 -0.3633 -0.9249 0.4479 32 1 -0.3633 0.8504 0.5770 33 1 3.5838 3.3569 -0.0003 34 1 6.0167 3.4259 -0.0021 35 1 7.3390 1.3543 -0.0025 36 1 6.2430 -0.8230 -0.0024 37 1 4.1367 -2.1601 -0.0027 38 1 3.6970 -3.6929 -1.5248 39 1 2.5169 -3.6727 -2.8572 40 1 2.9557 -2.1568 -2.0340 41 1 1.5043 -5.4771 -1.3623 42 1 0.5130 -4.8874 -0.0067 43 1 -1.3058 -3.2705 -0.3713 44 1 -1.2868 -2.4599 -1.9976 45 1 -3.2331 -4.4916 -1.2685 46 1 -2.6992 -4.2076 -2.9824 47 1 -4.5810 -7.2633 -1.8226 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085625405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:11 Heat of formation + Delta-G solvation = 85.557416 kcal Electronic energy + Delta-G solvation = -29251.353574 eV Core-core repulsion = 25401.295850 eV Total energy + Delta-G solvation = -3850.057723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.34126 -39.75483 -37.85602 -37.17355 -35.42812 -33.79309 -32.15810 -32.10078 -30.66625 -28.54873 -27.92831 -27.76933 -26.62788 -24.63449 -23.24438 -22.87805 -22.57006 -22.21202 -19.96781 -18.95573 -18.38950 -17.53335 -16.88105 -16.61108 -16.23347 -15.88527 -15.44677 -14.89827 -14.82852 -14.63972 -14.48279 -13.99674 -13.91951 -13.59117 -13.38576 -13.32657 -13.16300 -12.84100 -12.60725 -12.31384 -12.15113 -12.01811 -12.00862 -11.76249 -11.52126 -11.34120 -11.01928 -10.88330 -10.74926 -10.66325 -10.42507 -10.07883 -9.84270 -9.68903 -9.54526 -9.42440 -8.92139 -8.75225 -8.55208 -8.39464 -6.81883 -5.72117 -3.04035 -0.00771 0.41724 1.60970 2.39632 2.77536 3.10008 3.41907 3.45873 3.47361 3.77808 3.92481 4.19340 4.29780 4.41895 4.49309 4.50186 4.69629 4.78875 4.90683 5.02384 5.11315 5.22047 5.30483 5.37012 5.46200 5.50823 5.53043 5.59590 5.61529 5.62390 5.66894 5.81424 5.89611 5.95428 5.99547 6.05923 6.07595 6.13151 6.28951 6.39196 6.51650 6.54764 6.67722 6.78153 6.82819 7.31718 7.41216 7.56126 7.65181 7.68938 8.03467 8.21651 9.09050 9.75768 10.66673 11.45426 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026280 B = 0.002524 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.203772 B =11091.767354 C =11733.117382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.210 3.790 3 N -0.480 5.480 4 C 0.144 3.856 5 C -0.098 4.098 6 C -0.095 4.095 7 C -0.124 4.124 8 C -0.087 4.087 9 C -0.115 4.115 10 C -0.023 4.023 11 C -0.170 4.170 12 C 0.563 3.437 13 O -0.514 6.514 14 N -0.600 5.600 15 C 0.073 3.927 16 C 0.115 3.885 17 C 0.128 3.872 18 H 0.041 0.959 19 C -0.160 4.160 20 C 0.165 3.835 21 N -0.599 5.599 22 C -0.224 4.224 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.919 5.919 26 Si 0.909 3.091 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.286 1.286 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.066 0.934 46 H 0.025 0.975 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.716 17.793 1.397 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.057 3.943 3 N -0.188 5.188 4 C 0.023 3.977 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.142 4.142 8 C -0.106 4.106 9 C -0.117 4.117 10 C -0.049 4.049 11 C -0.175 4.175 12 C 0.349 3.651 13 O -0.390 6.390 14 N -0.333 5.333 15 C -0.071 4.071 16 C -0.007 4.007 17 C 0.020 3.980 18 H 0.058 0.942 19 C -0.198 4.198 20 C 0.040 3.960 21 N -0.326 5.326 22 C -0.352 4.352 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.566 5.566 26 Si 0.740 3.260 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.213 1.213 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.681 18.177 1.873 26.856 hybrid contribution 0.622 -1.884 -0.224 1.996 sum 20.303 16.293 1.649 26.084 Atomic orbital electron populations 1.21142 0.87579 1.05851 1.03901 1.21494 0.97482 0.86162 0.89182 1.67887 1.08210 1.28057 1.14689 1.18993 0.89162 0.93012 0.96557 1.20823 0.94205 0.96429 1.00241 1.20954 0.93694 0.98808 0.98061 1.20910 1.00375 0.92297 1.00662 1.21027 0.92444 0.98659 0.98429 1.18752 0.94904 0.93578 1.04514 1.21963 0.92933 0.97736 0.92270 1.20873 0.94400 0.95522 1.06717 1.17967 0.82728 0.82712 0.81690 1.90799 1.33020 1.78231 1.36961 1.47757 1.33593 1.20609 1.31296 1.21941 0.89590 1.02095 0.93453 1.21891 0.92327 0.83644 1.02876 1.22504 0.90075 0.90232 0.95225 0.94213 1.23868 0.98738 0.95698 1.01517 1.22099 0.92861 0.83702 0.97339 1.45961 1.00527 1.02429 1.83666 1.18923 0.93151 0.81144 1.41950 0.90483 1.24794 0.95440 0.97876 1.02228 1.69829 0.97021 1.34363 1.55383 0.86246 0.76638 0.85148 0.77990 1.21086 1.21601 1.21272 0.89783 0.87793 0.89991 0.84607 0.85245 0.85435 0.85093 0.83676 0.92578 0.90550 0.91224 0.91087 0.88721 0.89460 0.93919 0.91564 0.95704 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.83 36.01 0.35 -1.29 16 2 C 0.21 2.84 6.82 -82.14 -0.56 2.28 16 3 N -0.48 -6.40 10.20 -6.93 -0.07 -6.47 16 4 C 0.14 1.69 6.61 -84.78 -0.56 1.13 16 5 C -0.10 -0.90 9.97 -39.48 -0.39 -1.30 16 6 C -0.10 -0.66 9.94 -39.93 -0.40 -1.05 16 7 C -0.12 -0.81 9.96 -39.92 -0.40 -1.21 16 8 C -0.09 -0.66 9.77 -39.46 -0.39 -1.04 16 9 C -0.12 -1.19 5.74 -106.81 -0.61 -1.80 16 10 C -0.02 -0.24 7.61 -38.43 -0.29 -0.53 16 11 C -0.17 -2.22 4.74 -104.83 -0.50 -2.71 16 12 C 0.56 8.58 6.04 -12.37 -0.07 8.50 16 13 O -0.51 -9.63 12.84 5.31 0.07 -9.56 16 14 N -0.60 -8.49 2.83 -182.73 -0.52 -9.01 16 15 C 0.07 0.73 9.23 59.85 0.55 1.28 16 16 C 0.12 2.03 5.42 -4.04 -0.02 2.00 16 17 C 0.13 2.59 4.57 -66.86 -0.31 2.29 16 18 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 19 C -0.16 -3.23 7.13 -25.80 -0.18 -3.41 16 20 C 0.17 4.05 7.39 -2.97 -0.02 4.03 16 21 N -0.60 -15.43 3.57 -170.75 -0.61 -16.04 16 22 C -0.22 -6.26 10.51 -15.06 -0.16 -6.41 16 23 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 25 N -0.92 -27.75 11.53 55.49 0.64 -27.11 16 26 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.55 5.45 -51.93 -0.28 1.26 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.15 1.16 7.09 -52.48 -0.37 0.79 16 38 H 0.06 0.44 7.77 -51.93 -0.40 0.04 16 39 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.07 0.64 5.82 -51.93 -0.30 0.34 16 41 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 42 H 0.09 1.94 7.31 -51.93 -0.38 1.56 16 43 H 0.09 1.86 6.52 -51.93 -0.34 1.52 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.79 7.41 -51.93 -0.38 1.40 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -34.09 381.29 -10.48 -44.56 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.66 Total: 0.11 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -4.05 Total: 0.46 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.56 Total: -58.63 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.09 -10.48 -44.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085625405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.120 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds