Wall clock time and date at job start Tue Mar 31 2020 22:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36542 * 120.87599 * 2 1 4 4 C 1.40241 * 119.81756 * 180.02562 * 3 2 1 5 5 C 1.48276 * 119.24026 * 179.50648 * 4 3 2 6 6 O 1.21496 * 120.00402 * 356.09325 * 5 4 3 7 7 N 1.34778 * 119.99951 * 176.09350 * 5 4 3 8 8 C 1.46504 * 120.00000 * 4.84456 * 7 5 4 9 9 C 1.46502 * 120.00249 * 184.84262 * 7 5 4 10 10 C 1.52995 * 109.47065 * 84.12594 * 9 7 5 11 11 H 1.09004 * 112.96419 * 310.34834 * 10 9 7 12 12 C 1.53947 * 113.77034 * 178.66735 * 10 9 7 13 13 C 1.53950 * 86.29008 * 222.09303 * 12 10 9 14 14 N 1.47582 * 113.76688 * 82.02344 * 10 9 7 15 15 C 1.36934 * 134.49655 * 318.93574 * 14 10 9 16 16 H 1.08007 * 119.99932 * 336.55413 * 15 14 10 17 17 C 1.38808 * 120.00159 * 156.56024 * 15 14 10 18 18 N 1.31625 * 119.99738 * 165.10140 * 17 15 14 19 19 Si 1.86800 * 119.99970 * 345.10021 * 17 15 14 20 20 H 1.48497 * 109.47076 * 86.03735 * 19 17 15 21 21 H 1.48501 * 109.46987 * 206.03094 * 19 17 15 22 22 H 1.48490 * 109.47215 * 326.03328 * 19 17 15 23 23 N 1.31905 * 121.51819 * 359.47958 * 4 3 2 24 24 C 1.33237 * 121.29931 * 0.02562 * 23 4 3 25 25 C 1.40831 * 120.98811 * 180.02562 * 24 23 4 26 26 C 1.35990 * 119.73593 * 179.72283 * 25 24 23 27 27 C 1.39444 * 121.08620 * 0.25619 * 26 25 24 28 28 C 1.36122 * 120.92278 * 359.97438 * 27 26 25 29 29 C 1.40426 * 119.64927 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46838 * 270.75378 * 1 2 3 31 31 H 1.09000 * 109.46694 * 30.75060 * 1 2 3 32 32 H 1.09000 * 109.46902 * 150.75167 * 1 2 3 33 33 H 1.07999 * 120.09270 * 359.49558 * 3 2 1 34 34 H 1.09005 * 109.47309 * 55.91151 * 8 7 5 35 35 H 1.09001 * 109.47259 * 175.91003 * 8 7 5 36 36 H 1.09002 * 109.46957 * 295.90989 * 8 7 5 37 37 H 1.08995 * 109.46991 * 204.13000 * 9 7 5 38 38 H 1.09003 * 109.46779 * 324.12668 * 9 7 5 39 39 H 1.09002 * 113.73571 * 336.43673 * 12 10 9 40 40 H 1.09000 * 113.73818 * 107.64217 * 12 10 9 41 41 H 1.08994 * 113.76461 * 137.90565 * 13 12 10 42 42 H 1.08992 * 113.76713 * 269.19236 * 13 12 10 43 43 H 0.97003 * 119.99505 * 179.97438 * 18 17 15 44 44 H 1.07995 * 120.13038 * 0.02562 * 25 24 23 45 45 H 1.08004 * 119.45793 * 180.27741 * 26 25 24 46 46 H 1.08007 * 119.53631 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.17400 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1460 -0.0005 5 6 4.3580 2.4262 -0.0117 6 8 3.7582 3.4797 -0.0919 7 7 5.7035 2.4212 0.0672 8 6 6.4331 1.1508 0.0568 9 6 6.4364 3.6861 0.1632 10 6 6.4799 4.1407 1.6234 11 1 5.5010 4.1261 2.1027 12 6 7.2587 5.4504 1.8426 13 6 7.8558 4.7699 3.0877 14 7 7.5407 3.4907 2.4173 15 6 8.0340 2.2159 2.4986 16 1 7.4198 1.3791 2.1998 17 6 9.3232 1.9990 2.9650 18 7 9.6992 0.7890 3.3215 19 14 10.5246 3.4242 3.0868 20 1 10.3452 4.1129 4.3901 21 1 11.9142 2.9103 2.9857 22 1 10.2696 4.3823 1.9814 23 7 4.2786 0.0090 0.0092 24 6 3.6482 -1.1647 0.0194 25 6 4.3687 -2.3747 0.0302 26 6 3.6992 -3.5583 0.0463 27 6 2.3053 -3.5970 0.0468 28 6 1.5736 -2.4493 0.0319 29 6 2.2292 -1.2076 0.0151 30 1 -0.3633 0.0135 1.0276 31 1 -0.3633 0.8832 -0.5255 32 1 -0.3633 -0.8967 -0.5021 33 1 1.6837 2.1162 -0.0082 34 1 6.1657 0.5854 -0.8359 35 1 7.5052 1.3476 0.0545 36 1 6.1714 0.5743 0.9440 37 1 7.4529 3.5457 -0.2042 38 1 5.9340 4.4436 -0.4384 39 1 7.9915 5.6607 1.0635 40 1 6.6230 6.3060 2.0704 41 1 8.9233 4.9484 3.2164 42 1 7.2830 4.9410 3.9990 43 1 10.6003 0.6373 3.6471 44 1 5.4486 -2.3626 0.0308 45 1 4.2563 -4.4835 0.0591 46 1 1.7992 -4.5511 0.0593 47 1 0.4945 -2.4934 0.0329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085679485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:49 Heat of formation + Delta-G solvation = 102.802651 kcal Electronic energy + Delta-G solvation = -29606.914701 eV Core-core repulsion = 25757.604787 eV Total energy + Delta-G solvation = -3849.309914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.17219 -39.49728 -38.10186 -36.87712 -35.31259 -34.52350 -32.27256 -30.92550 -30.47420 -28.96480 -28.14404 -27.80917 -26.13319 -24.69761 -23.66777 -23.19437 -22.58467 -21.32263 -19.64659 -18.97158 -18.08441 -17.66666 -17.08332 -16.58396 -15.86567 -15.54311 -15.36265 -15.09201 -14.76928 -14.63901 -14.33346 -14.09500 -13.54309 -13.44652 -13.38046 -13.23939 -13.01725 -12.90449 -12.38414 -12.37088 -12.31228 -11.98693 -11.75780 -11.54936 -11.47634 -11.38901 -11.18111 -11.05681 -10.81038 -10.40700 -10.30498 -10.27365 -9.98402 -9.70171 -9.31465 -9.09211 -8.88593 -8.63003 -8.32279 -8.10054 -6.98237 -5.90133 -3.24440 0.14812 0.61044 1.84978 2.44166 3.26260 3.37172 3.39208 3.47488 3.51346 4.07241 4.08634 4.34726 4.51557 4.57971 4.61703 4.69513 4.71587 4.97001 5.02800 5.08877 5.23713 5.30616 5.31800 5.34346 5.38320 5.53401 5.69891 5.76132 5.81092 5.86276 5.89081 5.95659 5.96072 6.10731 6.12252 6.22627 6.24300 6.28931 6.34114 6.39307 6.40980 6.46442 6.49519 6.68150 6.83642 6.92813 7.14674 7.37737 7.69535 7.83389 8.39100 8.45319 8.76164 9.69387 10.41153 11.26429 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.003515 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.533454 B = 7964.722059 C = 9458.140276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.037 4.037 3 C -0.127 4.127 4 C 0.125 3.875 5 C 0.560 3.440 6 O -0.546 6.546 7 N -0.573 5.573 8 C 0.103 3.897 9 C 0.117 3.883 10 C 0.134 3.866 11 H 0.056 0.944 12 C -0.146 4.146 13 C 0.098 3.902 14 N -0.618 5.618 15 C -0.229 4.229 16 H 0.099 0.901 17 C 0.023 3.977 18 N -0.915 5.915 19 Si 0.889 3.111 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.273 1.273 23 N -0.430 5.430 24 C 0.123 3.877 25 C -0.079 4.079 26 C -0.109 4.109 27 C -0.110 4.110 28 C -0.106 4.106 29 C -0.088 4.088 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.042 0.958 43 H 0.262 0.738 44 H 0.142 0.858 45 H 0.131 0.869 46 H 0.126 0.874 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.593 -5.218 -9.257 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.045 4.045 3 C -0.148 4.148 4 C -0.028 4.028 5 C 0.346 3.654 6 O -0.425 6.425 7 N -0.302 5.302 8 C -0.039 4.039 9 C -0.006 4.006 10 C 0.027 3.973 11 H 0.073 0.927 12 C -0.185 4.185 13 C -0.026 4.026 14 N -0.346 5.346 15 C -0.356 4.356 16 H 0.116 0.884 17 C -0.176 4.176 18 N -0.560 5.560 19 Si 0.721 3.279 20 H -0.217 1.217 21 H -0.232 1.232 22 H -0.198 1.198 23 N -0.142 5.142 24 C 0.000 4.000 25 C -0.097 4.097 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.124 4.124 29 C -0.090 4.090 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.165 0.835 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.159 0.841 45 H 0.149 0.851 46 H 0.144 0.856 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.700 -5.068 -9.232 18.905 hybrid contribution 0.009 0.544 0.484 0.728 sum -15.691 -4.525 -8.748 18.526 Atomic orbital electron populations 1.20846 0.89686 1.03527 1.03194 1.20087 0.96728 0.91735 0.95953 1.21580 0.93677 0.99487 1.00025 1.21405 0.91539 0.92502 0.97348 1.17906 0.82403 0.87128 0.77966 1.90724 1.68504 1.31343 1.51884 1.47696 1.05038 1.09072 1.68401 1.22130 0.96653 0.83220 1.01906 1.21959 0.96429 0.84575 0.97672 1.22660 0.93425 0.90122 0.91100 0.92662 1.23590 0.99486 0.96273 0.99179 1.22834 0.98274 0.87005 0.94502 1.46345 1.39924 1.05780 1.42563 1.18834 0.95700 0.81130 1.39911 0.88417 1.24973 0.96846 0.95794 0.99946 1.69780 1.19276 1.20342 1.46577 0.86758 0.80345 0.82695 0.78080 1.21689 1.23239 1.19847 1.68572 1.38402 0.97260 1.09978 1.19022 0.89676 0.92514 0.98803 1.20974 1.00931 0.89916 0.97893 1.20930 0.94383 0.98166 0.99385 1.20969 0.94208 0.98429 0.99193 1.20978 0.99965 0.91196 1.00296 1.18840 0.94052 0.94233 1.01892 0.90157 0.90520 0.90796 0.83468 0.92384 0.90139 0.90930 0.89404 0.90449 0.90212 0.92082 0.93718 0.94025 0.92839 0.84059 0.85135 0.85589 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.59 36.01 0.35 -0.55 16 2 C -0.04 -0.44 5.92 -104.30 -0.62 -1.05 16 3 C -0.13 -1.78 9.23 -39.44 -0.36 -2.15 16 4 C 0.13 2.10 6.69 -82.96 -0.55 1.54 16 5 C 0.56 10.44 7.62 -12.13 -0.09 10.35 16 6 O -0.55 -10.88 15.93 5.37 0.09 -10.79 16 7 N -0.57 -10.77 2.89 -182.53 -0.53 -11.30 16 8 C 0.10 1.92 7.25 59.85 0.43 2.35 16 9 C 0.12 2.16 5.26 -4.04 -0.02 2.14 16 10 C 0.13 2.72 4.49 -66.86 -0.30 2.42 16 11 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 12 C -0.15 -2.64 7.86 -25.79 -0.20 -2.85 16 13 C 0.10 2.13 7.52 -2.84 -0.02 2.11 16 14 N -0.62 -14.86 3.24 -169.70 -0.55 -15.41 16 15 C -0.23 -6.27 9.81 -15.06 -0.15 -6.42 16 16 H 0.10 2.79 5.38 -52.48 -0.28 2.51 16 17 C 0.02 0.65 5.50 -17.43 -0.10 0.55 16 18 N -0.92 -27.75 13.97 55.49 0.78 -26.98 16 19 Si 0.89 22.66 24.74 -169.99 -4.21 18.45 16 20 H -0.29 -7.35 7.03 56.52 0.40 -6.95 16 21 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.27 -6.68 6.80 56.52 0.38 -6.29 16 23 N -0.43 -7.08 5.88 -7.54 -0.04 -7.12 16 24 C 0.12 1.78 6.61 -84.85 -0.56 1.22 16 25 C -0.08 -0.98 9.99 -39.41 -0.39 -1.37 16 26 C -0.11 -1.06 9.94 -39.94 -0.40 -1.46 16 27 C -0.11 -0.96 9.95 -39.89 -0.40 -1.36 16 28 C -0.11 -1.01 9.31 -39.52 -0.37 -1.38 16 29 C -0.09 -1.10 5.75 -106.71 -0.61 -1.71 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.07 0.45 6.51 -51.93 -0.34 0.11 16 33 H 0.15 1.92 7.61 -52.49 -0.40 1.52 16 34 H 0.06 0.97 6.98 -51.93 -0.36 0.61 16 35 H 0.08 1.61 6.87 -51.93 -0.36 1.25 16 36 H 0.07 1.49 6.20 -51.93 -0.32 1.17 16 37 H 0.09 1.63 7.77 -51.93 -0.40 1.23 16 38 H 0.08 1.32 7.54 -51.93 -0.39 0.93 16 39 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 1.02 3.71 -51.93 -0.19 0.82 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 46 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 47 H 0.13 0.89 6.44 -52.49 -0.34 0.55 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -33.27 372.12 -9.57 -42.84 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.34 Total: 2.33 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -4.37 Total: 2.37 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.35 Total: -60.81 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.21 Total: 18.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.27 -9.57 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085679485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.639 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds