Wall clock time and date at job start Tue Mar 31 2020 22:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36542 * 120.87599 * 2 1 4 4 C 1.40241 * 119.81756 * 180.02562 * 3 2 1 5 5 C 1.48276 * 119.24026 * 179.50648 * 4 3 2 6 6 O 1.21496 * 120.00402 * 356.09325 * 5 4 3 7 7 N 1.34778 * 119.99951 * 176.09350 * 5 4 3 8 8 C 1.46504 * 120.00000 * 4.84456 * 7 5 4 9 9 C 1.46502 * 120.00249 * 184.84262 * 7 5 4 10 10 C 1.52995 * 109.47065 * 84.12594 * 9 7 5 11 11 H 1.09004 * 112.96419 * 310.34834 * 10 9 7 12 12 C 1.53947 * 113.77034 * 178.66735 * 10 9 7 13 13 C 1.53950 * 86.29008 * 222.09303 * 12 10 9 14 14 N 1.47582 * 113.76688 * 82.02344 * 10 9 7 15 15 C 1.36934 * 134.49655 * 318.93574 * 14 10 9 16 16 H 1.08007 * 119.99932 * 336.55413 * 15 14 10 17 17 C 1.38808 * 120.00159 * 156.56024 * 15 14 10 18 18 N 1.31625 * 119.99738 * 165.10140 * 17 15 14 19 19 Si 1.86800 * 119.99970 * 345.10021 * 17 15 14 20 20 H 1.48497 * 109.47076 * 86.03735 * 19 17 15 21 21 H 1.48501 * 109.46987 * 206.03094 * 19 17 15 22 22 H 1.48490 * 109.47215 * 326.03328 * 19 17 15 23 23 N 1.31905 * 121.51819 * 359.47958 * 4 3 2 24 24 C 1.33237 * 121.29931 * 0.02562 * 23 4 3 25 25 C 1.40831 * 120.98811 * 180.02562 * 24 23 4 26 26 C 1.35990 * 119.73593 * 179.72283 * 25 24 23 27 27 C 1.39444 * 121.08620 * 0.25619 * 26 25 24 28 28 C 1.36122 * 120.92278 * 359.97438 * 27 26 25 29 29 C 1.40426 * 119.64927 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46838 * 270.75378 * 1 2 3 31 31 H 1.09000 * 109.46694 * 30.75060 * 1 2 3 32 32 H 1.09000 * 109.46902 * 150.75167 * 1 2 3 33 33 H 1.07999 * 120.09270 * 359.49558 * 3 2 1 34 34 H 1.09005 * 109.47309 * 55.91151 * 8 7 5 35 35 H 1.09001 * 109.47259 * 175.91003 * 8 7 5 36 36 H 1.09002 * 109.46957 * 295.90989 * 8 7 5 37 37 H 1.08995 * 109.46991 * 204.13000 * 9 7 5 38 38 H 1.09003 * 109.46779 * 324.12668 * 9 7 5 39 39 H 1.09002 * 113.73571 * 336.43673 * 12 10 9 40 40 H 1.09000 * 113.73818 * 107.64217 * 12 10 9 41 41 H 1.08994 * 113.76461 * 137.90565 * 13 12 10 42 42 H 1.08992 * 113.76713 * 269.19236 * 13 12 10 43 43 H 0.97003 * 119.99505 * 179.97438 * 18 17 15 44 44 H 1.07995 * 120.13038 * 0.02562 * 25 24 23 45 45 H 1.08004 * 119.45793 * 180.27741 * 26 25 24 46 46 H 1.08007 * 119.53631 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.17400 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1460 -0.0005 5 6 4.3580 2.4262 -0.0117 6 8 3.7582 3.4797 -0.0919 7 7 5.7035 2.4212 0.0672 8 6 6.4331 1.1508 0.0568 9 6 6.4364 3.6861 0.1632 10 6 6.4799 4.1407 1.6234 11 1 5.5010 4.1261 2.1027 12 6 7.2587 5.4504 1.8426 13 6 7.8558 4.7699 3.0877 14 7 7.5407 3.4907 2.4173 15 6 8.0340 2.2159 2.4986 16 1 7.4198 1.3791 2.1998 17 6 9.3232 1.9990 2.9650 18 7 9.6992 0.7890 3.3215 19 14 10.5246 3.4242 3.0868 20 1 10.3452 4.1129 4.3901 21 1 11.9142 2.9103 2.9857 22 1 10.2696 4.3823 1.9814 23 7 4.2786 0.0090 0.0092 24 6 3.6482 -1.1647 0.0194 25 6 4.3687 -2.3747 0.0302 26 6 3.6992 -3.5583 0.0463 27 6 2.3053 -3.5970 0.0468 28 6 1.5736 -2.4493 0.0319 29 6 2.2292 -1.2076 0.0151 30 1 -0.3633 0.0135 1.0276 31 1 -0.3633 0.8832 -0.5255 32 1 -0.3633 -0.8967 -0.5021 33 1 1.6837 2.1162 -0.0082 34 1 6.1657 0.5854 -0.8359 35 1 7.5052 1.3476 0.0545 36 1 6.1714 0.5743 0.9440 37 1 7.4529 3.5457 -0.2042 38 1 5.9340 4.4436 -0.4384 39 1 7.9915 5.6607 1.0635 40 1 6.6230 6.3060 2.0704 41 1 8.9233 4.9484 3.2164 42 1 7.2830 4.9410 3.9990 43 1 10.6003 0.6373 3.6471 44 1 5.4486 -2.3626 0.0308 45 1 4.2563 -4.4835 0.0591 46 1 1.7992 -4.5511 0.0593 47 1 0.4945 -2.4934 0.0329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085679485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:46 Heat of formation + Delta-G solvation = 82.816162 kcal Electronic energy + Delta-G solvation = -29607.781380 eV Core-core repulsion = 25757.604787 eV Total energy + Delta-G solvation = -3850.176593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.21862 -40.89824 -39.70597 -37.86869 -36.66180 -35.61802 -34.39606 -31.97001 -31.32726 -30.69778 -29.72499 -28.73937 -27.61186 -25.99026 -25.09918 -24.57333 -24.00046 -22.27890 -21.07734 -20.56817 -19.10434 -19.01458 -18.70599 -17.79057 -17.48395 -17.02295 -16.75838 -16.47936 -16.08674 -15.65988 -15.42233 -15.27242 -15.09061 -14.85193 -14.75447 -14.32341 -14.27220 -14.02721 -13.96227 -13.89859 -13.32523 -13.12377 -13.00027 -12.94436 -12.79682 -12.68144 -12.65293 -12.42600 -12.32665 -12.15612 -12.00169 -11.56581 -11.36783 -11.28209 -11.17727 -10.72076 -10.29134 -9.90200 -9.61612 -9.20581 -8.97553 -8.09573 -5.40672 -0.83641 -0.35101 0.92172 1.31959 1.34032 1.39045 1.49607 1.90879 2.21206 2.47359 2.88951 2.94759 3.06872 3.24901 3.47324 3.53870 3.74552 3.76753 3.84229 4.10209 4.17300 4.21279 4.25805 4.31719 4.39160 4.48059 4.50706 4.52360 4.56376 4.60385 4.68397 4.76623 4.77765 4.79389 4.87880 4.97103 5.00503 5.01355 5.10347 5.13069 5.20651 5.35676 5.41195 5.45796 5.50654 5.54463 5.60286 5.87937 6.22293 6.31612 6.62327 6.63138 7.02009 7.52822 8.36358 9.10803 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.003515 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.533454 B = 7964.722059 C = 9458.140276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.023 4.023 3 C -0.147 4.147 4 C 0.096 3.904 5 C 0.558 3.442 6 O -0.563 6.563 7 N -0.582 5.582 8 C 0.129 3.871 9 C 0.120 3.880 10 C 0.132 3.868 11 H 0.043 0.957 12 C -0.120 4.120 13 C 0.087 3.913 14 N -0.642 5.642 15 C -0.209 4.209 16 H 0.072 0.928 17 C -0.037 4.037 18 N -0.963 5.963 19 Si 0.947 3.053 20 H -0.287 1.287 21 H -0.313 1.313 22 H -0.254 1.254 23 N -0.458 5.458 24 C 0.095 3.905 25 C -0.113 4.113 26 C -0.093 4.093 27 C -0.103 4.103 28 C -0.101 4.101 29 C -0.102 4.102 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.151 0.849 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.038 0.962 42 H 0.050 0.950 43 H 0.258 0.742 44 H 0.129 0.871 45 H 0.158 0.842 46 H 0.168 0.832 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.376 -5.359 -10.076 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.031 4.031 3 C -0.168 4.168 4 C -0.056 4.056 5 C 0.345 3.655 6 O -0.443 6.443 7 N -0.311 5.311 8 C -0.014 4.014 9 C -0.003 4.003 10 C 0.025 3.975 11 H 0.060 0.940 12 C -0.158 4.158 13 C -0.037 4.037 14 N -0.370 5.370 15 C -0.337 4.337 16 H 0.090 0.910 17 C -0.231 4.231 18 N -0.611 5.611 19 Si 0.778 3.222 20 H -0.215 1.215 21 H -0.241 1.241 22 H -0.179 1.179 23 N -0.170 5.170 24 C -0.028 4.028 25 C -0.132 4.132 26 C -0.113 4.113 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.104 4.104 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.147 0.853 45 H 0.176 0.824 46 H 0.185 0.815 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.512 -5.159 -10.069 21.695 hybrid contribution 0.677 0.388 0.748 1.081 sum -17.835 -4.771 -9.321 20.682 Atomic orbital electron populations 1.20992 0.86221 1.05313 1.04506 1.20565 0.98905 0.90522 0.93084 1.21641 0.92598 1.00748 1.01846 1.21261 0.92620 0.91764 1.00002 1.18283 0.82185 0.87965 0.77032 1.90679 1.68720 1.32188 1.52711 1.47775 1.05459 1.08988 1.68859 1.21776 0.95086 0.83245 1.01283 1.21918 0.96604 0.84987 0.96812 1.22750 0.92093 0.91222 0.91397 0.93956 1.23446 0.99181 0.95918 0.97265 1.23058 0.98254 0.86013 0.96410 1.46623 1.40680 1.05376 1.44350 1.18790 0.95246 0.82384 1.37319 0.91034 1.25558 0.98610 0.97909 1.01009 1.69915 1.19444 1.22484 1.49227 0.85826 0.77675 0.80158 0.78557 1.21476 1.24148 1.17867 1.68391 1.39610 0.98018 1.11030 1.19407 0.91339 0.92215 0.99844 1.21061 1.00731 0.90686 1.00692 1.21347 0.95505 0.97956 0.96458 1.21470 0.93561 1.00027 0.96956 1.21412 1.01832 0.89908 0.98807 1.19169 0.93263 0.96039 1.01893 0.88751 0.89513 0.88312 0.83165 0.91055 0.92152 0.93585 0.89645 0.88604 0.88812 0.88338 0.94373 0.93221 0.93266 0.85339 0.82428 0.81482 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.59 71.24 0.68 -0.69 16 2 C -0.02 -0.51 5.92 -19.65 -0.12 -0.62 16 3 C -0.15 -4.23 9.23 22.36 0.21 -4.02 16 4 C 0.10 3.38 6.69 42.29 0.28 3.66 16 5 C 0.56 21.77 7.62 86.91 0.66 22.43 16 6 O -0.56 -22.98 15.93 -3.70 -0.06 -23.04 16 7 N -0.58 -22.92 2.89 -849.69 -2.45 -25.37 16 8 C 0.13 5.18 7.25 127.77 0.93 6.11 16 9 C 0.12 4.45 5.26 86.38 0.45 4.91 16 10 C 0.13 5.28 4.49 45.09 0.20 5.49 16 11 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 12 C -0.12 -3.99 7.86 31.25 0.25 -3.74 16 13 C 0.09 3.61 7.52 86.44 0.65 4.26 16 14 N -0.64 -31.03 3.24 -690.81 -2.24 -33.27 16 15 C -0.21 -11.88 9.81 84.03 0.82 -11.06 16 16 H 0.07 4.37 5.38 -2.91 -0.02 4.35 16 17 C -0.04 -2.20 5.50 84.86 0.47 -1.73 16 18 N -0.96 -60.99 13.97 21.65 0.30 -60.69 16 19 Si 0.95 47.50 24.74 68.60 1.70 49.19 16 20 H -0.29 -14.15 7.03 99.48 0.70 -13.45 16 21 H -0.31 -15.95 7.11 99.48 0.71 -15.25 16 22 H -0.25 -11.79 6.80 99.48 0.68 -11.12 16 23 N -0.46 -16.17 5.88 -177.77 -1.04 -17.21 16 24 C 0.10 2.86 6.61 40.49 0.27 3.13 16 25 C -0.11 -2.91 9.99 22.38 0.22 -2.69 16 26 C -0.09 -1.63 9.94 22.04 0.22 -1.41 16 27 C -0.10 -1.38 9.95 22.07 0.22 -1.16 16 28 C -0.10 -1.57 9.31 22.31 0.21 -1.36 16 29 C -0.10 -2.41 5.75 -21.22 -0.12 -2.54 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.10 0.71 6.51 -2.39 -0.02 0.70 16 33 H 0.15 4.02 7.61 -2.91 -0.02 4.00 16 34 H 0.07 2.62 6.98 -2.38 -0.02 2.60 16 35 H 0.06 2.61 6.87 -2.39 -0.02 2.60 16 36 H 0.05 2.09 6.20 -2.39 -0.01 2.07 16 37 H 0.09 3.20 7.77 -2.39 -0.02 3.18 16 38 H 0.10 3.21 7.54 -2.39 -0.02 3.19 16 39 H 0.09 2.91 8.10 -2.39 -0.02 2.89 16 40 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.04 1.66 3.71 -2.39 -0.01 1.65 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 45 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 47 H 0.17 1.33 6.44 -2.91 -0.02 1.31 16 Total: -1.00 -77.03 372.12 3.67 -73.36 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.96 Total: 18.06 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 6.50 Total: 18.97 kcal Atomic # 7 Polarization: -131.12 SS G_CDS: -5.43 Total: -136.55 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.06 Total: -23.04 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.70 Total: 49.19 kcal Total: -77.03 3.67 -73.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085679485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.179 kcal (2) G-P(sol) polarization free energy of solvation -77.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds