Wall clock time and date at job start Tue Mar 31 2020 22:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36543 * 120.87330 * 2 1 4 4 C 1.40240 * 119.81592 * 179.97438 * 3 2 1 5 5 C 1.48264 * 119.24101 * 180.02562 * 4 3 2 6 6 O 1.21505 * 120.00130 * 352.91085 * 5 4 3 7 7 N 1.34780 * 120.00235 * 172.91761 * 5 4 3 8 8 C 1.46498 * 120.00122 * 3.41050 * 7 5 4 9 9 C 1.46502 * 120.00029 * 183.41232 * 7 5 4 10 10 C 1.53001 * 109.46738 * 97.43657 * 9 7 5 11 11 H 1.08994 * 112.96749 * 53.40402 * 10 9 7 12 12 C 1.53946 * 113.76630 * 185.08524 * 10 9 7 13 13 C 1.53950 * 86.29066 * 137.90647 * 12 10 9 14 14 N 1.47581 * 86.11519 * 336.39296 * 13 12 10 15 15 C 1.36932 * 134.48821 * 204.64275 * 14 13 12 16 16 H 1.08006 * 119.99598 * 186.58839 * 15 14 13 17 17 C 1.38808 * 120.00526 * 6.58546 * 15 14 13 18 18 N 1.31616 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00385 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47144 * 89.99585 * 19 17 15 21 21 H 1.48496 * 109.47557 * 209.99633 * 19 17 15 22 22 H 1.48503 * 109.47156 * 329.99996 * 19 17 15 23 23 N 1.31907 * 121.52097 * 359.97438 * 4 3 2 24 24 C 1.33248 * 121.29580 * 359.72986 * 23 4 3 25 25 C 1.40835 * 120.98438 * 179.79018 * 24 23 4 26 26 C 1.35990 * 119.73557 * 180.25106 * 25 24 23 27 27 C 1.39444 * 121.08780 * 0.25059 * 26 25 24 28 28 C 1.36132 * 120.92074 * 359.97438 * 27 26 25 29 29 C 1.40430 * 119.64570 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47081 * 270.02161 * 1 2 3 31 31 H 1.09002 * 109.47234 * 30.02788 * 1 2 3 32 32 H 1.09006 * 109.46395 * 150.02650 * 1 2 3 33 33 H 1.07993 * 120.09509 * 359.95021 * 3 2 1 34 34 H 1.09007 * 109.46663 * 83.94460 * 8 7 5 35 35 H 1.08992 * 109.47466 * 203.94437 * 8 7 5 36 36 H 1.09003 * 109.47227 * 323.94939 * 8 7 5 37 37 H 1.09001 * 109.46971 * 217.43347 * 9 7 5 38 38 H 1.08996 * 109.47084 * 337.43923 * 9 7 5 39 39 H 1.09001 * 113.74185 * 252.24839 * 12 10 9 40 40 H 1.09001 * 113.74550 * 23.45791 * 12 10 9 41 41 H 1.09003 * 113.76777 * 90.69552 * 13 12 10 42 42 H 1.08998 * 113.76740 * 221.97903 * 13 12 10 43 43 H 0.97001 * 120.00719 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.13150 * 0.52803 * 25 24 23 45 45 H 1.07995 * 119.45854 * 180.27484 * 26 25 24 46 46 H 1.07997 * 119.53989 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.17469 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1720 0.0000 4 6 3.6098 1.1461 0.0005 5 6 4.3578 2.4262 0.0011 6 8 3.7628 3.4776 -0.1288 7 7 5.6979 2.4237 0.1456 8 6 6.4235 1.1537 0.2270 9 6 6.4289 3.6911 0.2212 10 6 6.6906 4.0421 1.6872 11 1 7.1811 3.2382 2.2360 12 6 7.3463 5.4204 1.8877 13 6 6.3713 5.6017 3.0652 14 7 5.5186 4.6104 2.3811 15 6 4.1782 4.3304 2.3877 16 1 3.8052 3.4630 1.8633 17 6 3.2988 5.1612 3.0682 18 7 3.7534 6.2179 3.7078 19 14 1.4704 4.7788 3.0777 20 1 1.1530 3.9067 4.2371 21 1 0.7005 6.0441 3.1848 22 1 1.1040 4.0814 1.8189 23 7 4.2786 0.0091 0.0016 24 6 3.6481 -1.1648 0.0075 25 6 4.3687 -2.3748 0.0041 26 6 3.6992 -3.5585 0.0052 27 6 2.3054 -3.5974 0.0043 28 6 1.5736 -2.4495 0.0029 29 6 2.2293 -1.2077 0.0018 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3632 -0.8903 -0.5135 33 1 1.6836 2.1162 -0.0008 34 1 6.6195 0.7821 -0.7789 35 1 7.3684 1.3078 0.7479 36 1 5.8224 0.4260 0.7723 37 1 7.3788 3.5945 -0.3045 38 1 5.8363 4.4804 -0.2412 39 1 8.3927 5.3690 2.1883 40 1 7.1745 6.1123 1.0631 41 1 6.7671 5.2563 4.0204 42 1 5.9316 6.5974 3.1221 43 1 3.1390 6.7984 4.1837 44 1 5.4487 -2.3627 0.0052 45 1 4.2563 -4.4837 0.0071 46 1 1.7993 -4.5515 0.0047 47 1 0.4945 -2.4937 0.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085679486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:56 Heat of formation + Delta-G solvation = 108.219512 kcal Electronic energy + Delta-G solvation = -30139.780097 eV Core-core repulsion = 26290.705076 eV Total energy + Delta-G solvation = -3849.075021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.14414 -39.36178 -37.68342 -36.75984 -35.27739 -34.45255 -31.96646 -30.84662 -30.46441 -28.50275 -27.82000 -27.62366 -26.17091 -24.51738 -23.62383 -23.17132 -22.21197 -21.26020 -19.43023 -18.92296 -18.03361 -17.67932 -16.79118 -16.56454 -15.67318 -15.51159 -15.15157 -14.75608 -14.67761 -14.38610 -14.33128 -13.73497 -13.59814 -13.46109 -13.38183 -13.10212 -13.04550 -12.57790 -12.40028 -12.31374 -12.21381 -11.72200 -11.56921 -11.43368 -11.38594 -11.23545 -10.94676 -10.75112 -10.54811 -10.42260 -10.25848 -9.87950 -9.72713 -9.55719 -9.19538 -8.91078 -8.81087 -8.54123 -8.30136 -7.93978 -6.64625 -5.54218 -2.82341 0.16111 0.66407 1.85764 2.54024 3.36163 3.50171 3.54339 3.56538 3.59913 4.10060 4.15919 4.38749 4.57522 4.63977 4.68115 4.70747 4.98467 5.03640 5.13486 5.25869 5.28127 5.40922 5.43550 5.59937 5.62455 5.66212 5.77172 5.77876 5.85375 5.86982 5.92352 5.97041 6.02967 6.07386 6.11761 6.21575 6.32388 6.34723 6.44034 6.48806 6.53514 6.75392 6.77959 6.84829 7.13921 7.41157 7.58359 7.69639 7.80162 7.94981 8.22576 8.74596 9.28584 9.94579 10.80113 11.62392 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.004335 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.534460 B = 6457.265087 C = 8043.823000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.033 4.033 3 C -0.125 4.125 4 C 0.137 3.863 5 C 0.552 3.448 6 O -0.487 6.487 7 N -0.590 5.590 8 C 0.077 3.923 9 C 0.115 3.885 10 C 0.124 3.876 11 H 0.043 0.957 12 C -0.157 4.157 13 C 0.151 3.849 14 N -0.596 5.596 15 C -0.187 4.187 16 H 0.087 0.913 17 C -0.015 4.015 18 N -0.927 5.927 19 Si 0.899 3.101 20 H -0.295 1.295 21 H -0.292 1.292 22 H -0.276 1.276 23 N -0.445 5.445 24 C 0.122 3.878 25 C -0.087 4.087 26 C -0.107 4.107 27 C -0.118 4.118 28 C -0.098 4.098 29 C -0.091 4.091 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.020 0.980 42 H 0.079 0.921 43 H 0.248 0.752 44 H 0.136 0.864 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.853 -18.844 -9.469 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.041 4.041 3 C -0.146 4.146 4 C -0.015 4.015 5 C 0.337 3.663 6 O -0.359 6.359 7 N -0.323 5.323 8 C -0.066 4.066 9 C -0.009 4.009 10 C 0.015 3.985 11 H 0.060 0.940 12 C -0.196 4.196 13 C 0.026 3.974 14 N -0.321 5.321 15 C -0.315 4.315 16 H 0.105 0.895 17 C -0.210 4.210 18 N -0.576 5.576 19 Si 0.730 3.270 20 H -0.223 1.223 21 H -0.219 1.219 22 H -0.201 1.201 23 N -0.158 5.158 24 C -0.001 4.001 25 C -0.106 4.106 26 C -0.127 4.127 27 C -0.136 4.136 28 C -0.117 4.117 29 C -0.094 4.094 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.154 0.846 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.108 -18.244 -9.479 20.589 hybrid contribution -1.774 -0.336 0.358 1.841 sum -0.666 -18.580 -9.121 20.709 Atomic orbital electron populations 1.20875 0.89682 1.03562 1.03380 1.20121 0.96840 0.91693 0.95479 1.21723 0.93903 0.99862 0.99071 1.21634 0.91778 0.92524 0.95572 1.17698 0.82294 0.86955 0.79344 1.90907 1.67610 1.30615 1.46813 1.47483 1.05910 1.07626 1.71284 1.22320 0.96773 0.86035 1.01486 1.21952 0.95289 0.85514 0.98104 1.22659 0.89482 0.94481 0.91853 0.93973 1.23778 0.97318 0.97255 1.01241 1.22292 0.87317 0.96405 0.91382 1.46022 1.00777 1.36756 1.48534 1.19330 0.79849 1.07162 1.25144 0.89524 1.24691 0.97423 0.97576 1.01260 1.69812 1.32848 1.16396 1.38548 0.86258 0.86155 0.77029 0.77542 1.22346 1.21852 1.20086 1.68475 1.37677 0.97312 1.12386 1.19052 0.89805 0.92609 0.98667 1.20828 1.00354 0.89990 0.99415 1.20876 0.94434 0.97949 0.99433 1.20920 0.94172 0.98375 1.00168 1.21014 1.00059 0.91199 0.99401 1.18807 0.94061 0.94148 1.02348 0.90014 0.90347 0.90792 0.83133 0.93448 0.92727 0.87705 0.91540 0.88899 0.93246 0.90673 0.96195 0.90246 0.94178 0.84587 0.85388 0.85686 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.59 36.01 0.35 -0.88 16 2 C -0.03 -0.47 5.92 -104.30 -0.62 -1.08 16 3 C -0.13 -2.15 9.22 -39.44 -0.36 -2.51 16 4 C 0.14 2.52 6.65 -82.96 -0.55 1.97 16 5 C 0.55 11.55 5.78 -12.14 -0.07 11.48 16 6 O -0.49 -11.95 13.09 5.36 0.07 -11.88 16 7 N -0.59 -11.04 2.88 -182.53 -0.53 -11.57 16 8 C 0.08 1.14 9.38 59.85 0.56 1.71 16 9 C 0.11 2.16 5.35 -4.04 -0.02 2.14 16 10 C 0.12 2.58 4.53 -66.86 -0.30 2.28 16 11 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.16 -3.05 7.86 -25.80 -0.20 -3.26 16 13 C 0.15 3.72 7.69 -2.97 -0.02 3.69 16 14 N -0.60 -15.78 3.57 -170.75 -0.61 -16.39 16 15 C -0.19 -5.48 9.08 -15.06 -0.14 -5.61 16 16 H 0.09 2.52 4.22 -52.48 -0.22 2.30 16 17 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.96 11.28 55.49 0.63 -28.33 16 19 Si 0.90 23.88 29.55 -169.99 -5.02 18.85 16 20 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 21 H -0.29 -7.78 7.11 56.52 0.40 -7.37 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 23 N -0.45 -7.15 5.91 -7.54 -0.04 -7.19 16 24 C 0.12 1.72 6.61 -84.85 -0.56 1.16 16 25 C -0.09 -0.96 9.99 -39.41 -0.39 -1.35 16 26 C -0.11 -0.94 9.94 -39.94 -0.40 -1.34 16 27 C -0.12 -1.02 9.96 -39.89 -0.40 -1.41 16 28 C -0.10 -0.99 9.31 -39.51 -0.37 -1.36 16 29 C -0.09 -1.22 5.75 -106.71 -0.61 -1.83 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.07 0.58 6.51 -51.93 -0.34 0.24 16 33 H 0.15 2.75 7.62 -52.49 -0.40 2.35 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.72 8.03 -51.93 -0.42 0.31 16 36 H 0.11 1.64 5.13 -54.42 -0.28 1.36 16 37 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 38 H 0.09 2.01 7.17 -51.93 -0.37 1.63 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 2.17 6.88 -51.93 -0.36 1.81 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 47 H 0.13 1.00 6.44 -52.49 -0.34 0.66 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -35.66 375.22 -10.56 -46.22 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.50 Total: 1.38 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -4.21 Total: 3.25 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.55 Total: -63.48 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.07 Total: -11.88 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.02 Total: 18.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.66 -10.56 -46.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085679486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.439 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds