Wall clock time and date at job start Tue Mar 31 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39437 * 119.53936 * 2 1 4 4 C 1.35989 * 121.08492 * 179.97438 * 3 2 1 5 5 C 1.40829 * 119.73821 * 359.97438 * 4 3 2 6 6 N 1.33270 * 120.99524 * 179.97438 * 5 4 3 7 7 C 1.31879 * 121.30023 * 180.02562 * 6 5 4 8 8 C 1.48271 * 119.24131 * 179.97438 * 7 6 5 9 9 O 1.21495 * 120.00320 * 174.55334 * 8 7 6 10 10 N 1.34784 * 119.99882 * 354.54321 * 8 7 6 11 11 C 1.46503 * 119.99515 * 5.06825 * 10 8 7 12 12 C 1.46499 * 120.00326 * 185.05642 * 10 8 7 13 13 C 1.52999 * 109.46622 * 83.18751 * 12 10 8 14 14 H 1.08998 * 112.96770 * 311.50251 * 13 12 10 15 15 C 1.53948 * 113.77036 * 179.82265 * 13 12 10 16 16 C 1.53941 * 86.29307 * 222.09449 * 15 13 12 17 17 N 1.47581 * 113.77060 * 83.33001 * 13 12 10 18 18 C 1.36938 * 134.48771 * 318.94053 * 17 13 12 19 19 H 1.07996 * 120.00708 * 2.84429 * 18 17 13 20 20 C 1.38820 * 119.99675 * 182.83840 * 18 17 13 21 21 N 1.31620 * 119.99948 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99933 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47059 * 60.00345 * 22 20 18 24 24 H 1.48499 * 109.46950 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47163 * 300.00365 * 22 20 18 26 26 C 1.40281 * 121.52315 * 359.97438 * 7 6 5 27 27 C 1.36506 * 119.81329 * 0.02562 * 26 7 6 28 28 C 1.40759 * 118.24555 * 0.02562 * 27 26 7 29 29 C 1.36129 * 119.54388 * 179.72506 * 2 1 3 30 30 H 1.08994 * 109.46697 * 90.00464 * 1 2 3 31 31 H 1.09002 * 109.46910 * 209.99967 * 1 2 3 32 32 H 1.09000 * 109.47326 * 329.99844 * 1 2 3 33 33 H 1.07997 * 119.45693 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.13320 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.47703 * 58.45261 * 11 10 8 36 36 H 1.09001 * 109.46532 * 178.45594 * 11 10 8 37 37 H 1.09002 * 109.46768 * 298.44907 * 11 10 8 38 38 H 1.08996 * 109.47522 * 203.18845 * 12 10 8 39 39 H 1.09000 * 109.46855 * 323.19554 * 12 10 8 40 40 H 1.09004 * 113.73588 * 336.44306 * 15 13 12 41 41 H 1.08999 * 113.74042 * 107.63522 * 15 13 12 42 42 H 1.09001 * 113.77089 * 137.90346 * 16 15 13 43 43 H 1.08999 * 113.76662 * 269.19468 * 16 15 13 44 44 H 0.97006 * 119.99818 * 179.97438 * 21 20 18 45 45 H 1.07995 * 120.09605 * 180.02562 * 26 7 6 46 46 H 1.08002 * 120.88043 * 180.02562 * 27 26 7 47 47 H 1.08001 * 120.17470 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5539 1.2498 0.0005 5 6 4.2852 0.0463 0.0016 6 7 5.6179 0.0530 0.0016 7 6 6.3087 -1.0704 0.0022 8 6 7.7902 -1.0097 0.0016 9 8 8.4401 -2.0312 0.1019 10 7 8.4159 0.1789 -0.1105 11 6 7.6361 1.4191 -0.1199 12 6 9.8757 0.2306 -0.2226 13 6 10.2837 -0.0004 -1.6790 14 1 9.7929 -0.8649 -2.1262 15 6 11.8051 0.0381 -1.9107 16 6 11.4904 0.8484 -3.1812 17 7 10.2271 1.2160 -2.5127 18 6 9.3532 2.2647 -2.6220 19 1 8.4972 2.3249 -1.9663 20 6 9.5679 3.2504 -3.5756 21 7 10.6109 3.1768 -4.3749 22 14 8.3755 4.6806 -3.7252 23 1 8.3333 5.4262 -2.4417 24 1 8.8251 5.5883 -4.8110 25 1 7.0199 4.1638 -4.0421 26 6 5.6743 -2.3216 0.0032 27 6 4.3110 -2.3912 0.0033 28 6 3.5825 -1.1868 0.0016 29 6 2.1783 -1.1843 0.0057 30 1 -0.3632 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6383 2.1388 -0.0004 34 1 4.0707 2.1981 0.0009 35 1 7.0547 1.4898 0.7994 36 1 8.3111 2.2721 -0.1894 37 1 6.9623 1.4181 -0.9767 38 1 10.2308 1.2081 0.1036 39 1 10.3159 -0.5441 0.4053 40 1 12.3501 0.6025 -1.1540 41 1 12.2437 -0.9399 -2.1092 42 1 12.1630 1.6906 -3.3431 43 1 11.3557 0.2344 -4.0717 44 1 10.7607 3.8655 -5.0415 45 1 6.2627 -3.2271 0.0041 46 1 3.8047 -3.3452 0.0045 47 1 1.6337 -2.1169 0.0097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085712697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:52 Heat of formation + Delta-G solvation = 95.216262 kcal Electronic energy + Delta-G solvation = -29329.877755 eV Core-core repulsion = 25480.238870 eV Total energy + Delta-G solvation = -3849.638884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16233 -39.52412 -37.88405 -37.19483 -35.10378 -33.64754 -32.36609 -32.11238 -30.42020 -28.80233 -27.89884 -27.27474 -25.99276 -24.35736 -23.54159 -23.24821 -22.35318 -22.01635 -19.68841 -18.99698 -18.11896 -17.27614 -16.97561 -16.68223 -15.74315 -15.54540 -15.32393 -14.85935 -14.52995 -14.46609 -14.38893 -14.05255 -13.74790 -13.71149 -13.37171 -13.28564 -13.03769 -12.81474 -12.63365 -12.45815 -12.03178 -11.72426 -11.56644 -11.44465 -11.33154 -11.25911 -11.04505 -10.91435 -10.73068 -10.66398 -10.47511 -10.07808 -9.93682 -9.62985 -9.26724 -9.13515 -8.87271 -8.71910 -8.38385 -8.10427 -6.78348 -5.69474 -2.99841 0.08552 0.54438 1.79150 2.37979 3.21116 3.33723 3.40432 3.44683 3.46420 4.00237 4.02958 4.34573 4.48646 4.49583 4.53326 4.69499 4.79883 4.90156 5.06026 5.20918 5.23615 5.24754 5.28273 5.49245 5.53902 5.57987 5.69513 5.75658 5.81935 5.84772 5.89936 5.93928 6.01606 6.09455 6.15177 6.17760 6.25855 6.29904 6.33400 6.53508 6.54372 6.64468 6.70805 6.78824 7.03939 7.34880 7.50859 7.61182 7.66782 7.78312 8.06806 8.42129 9.12408 9.79429 10.71377 11.48317 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.003655 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.181630 B = 7658.164290 C = 9601.284629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.106 4.106 4 C -0.077 4.077 5 C 0.115 3.885 6 N -0.429 5.429 7 C 0.121 3.879 8 C 0.560 3.440 9 O -0.542 6.542 10 N -0.576 5.576 11 C 0.098 3.902 12 C 0.116 3.884 13 C 0.128 3.872 14 H 0.045 0.955 15 C -0.159 4.159 16 C 0.162 3.838 17 N -0.602 5.602 18 C -0.224 4.224 19 H 0.089 0.911 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.121 4.121 27 C -0.069 4.069 28 C -0.084 4.084 29 C -0.107 4.107 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.024 0.976 44 H 0.252 0.748 45 H 0.149 0.851 46 H 0.143 0.857 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.810 -7.974 11.434 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.077 4.077 3 C -0.126 4.126 4 C -0.096 4.096 5 C -0.008 4.008 6 N -0.141 5.141 7 C -0.033 4.033 8 C 0.346 3.654 9 O -0.420 6.420 10 N -0.305 5.305 11 C -0.045 4.045 12 C -0.007 4.007 13 C 0.020 3.980 14 H 0.063 0.937 15 C -0.198 4.198 16 C 0.037 3.963 17 N -0.328 5.328 18 C -0.351 4.351 19 H 0.107 0.893 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.141 4.141 27 C -0.095 4.095 28 C -0.086 4.086 29 C -0.125 4.125 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.167 0.833 46 H 0.161 0.839 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.177 -7.300 11.342 21.062 hybrid contribution -1.241 0.054 -0.510 1.343 sum -17.418 -7.246 10.832 21.754 Atomic orbital electron populations 1.20854 0.90799 1.03008 1.02639 1.19744 0.96477 0.93029 0.98477 1.20814 0.93998 0.97822 0.99974 1.20918 0.93556 0.97089 0.97991 1.19004 0.89375 0.92903 0.99490 1.68522 1.06761 1.29144 1.09639 1.21462 0.94755 0.89457 0.97588 1.17887 0.85569 0.83912 0.78007 1.90737 1.65886 1.33864 1.51523 1.47697 1.07987 1.06315 1.68483 1.22149 0.95340 0.85064 1.01946 1.22060 0.77821 1.02537 0.98291 1.22595 0.93833 0.90842 0.90698 0.93727 1.23781 0.95522 0.99433 1.01042 1.22119 0.87964 0.95018 0.91241 1.46180 1.25334 1.18770 1.42524 1.19314 1.04093 0.97282 1.14430 0.89327 1.24779 0.98389 0.99205 0.98228 1.69822 1.28773 1.35152 1.23183 0.86351 0.80577 0.82463 0.77367 1.21039 1.21665 1.21331 1.21738 0.95029 0.98893 0.98475 1.21405 0.93683 0.97689 0.96740 1.18944 0.94746 0.94068 1.00841 1.20809 0.92165 0.98216 1.01339 0.90828 0.91384 0.91249 0.85173 0.84196 0.92187 0.90343 0.91048 0.89502 0.90556 0.90708 0.92960 0.91231 0.95821 0.93802 0.83299 0.83909 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.98 36.01 0.36 -0.31 16 2 C -0.08 -0.67 5.85 -104.93 -0.61 -1.29 16 3 C -0.11 -1.00 9.58 -39.94 -0.38 -1.38 16 4 C -0.08 -0.90 9.99 -39.41 -0.39 -1.29 16 5 C 0.12 1.59 6.61 -84.85 -0.56 1.03 16 6 N -0.43 -6.74 5.89 -7.54 -0.04 -6.78 16 7 C 0.12 1.96 6.69 -82.95 -0.55 1.41 16 8 C 0.56 10.38 7.60 -12.13 -0.09 10.29 16 9 O -0.54 -10.90 15.96 5.37 0.09 -10.81 16 10 N -0.58 -10.69 2.89 -182.53 -0.53 -11.22 16 11 C 0.10 1.70 7.28 59.85 0.44 2.14 16 12 C 0.12 2.18 5.25 -4.04 -0.02 2.16 16 13 C 0.13 2.75 4.49 -66.86 -0.30 2.45 16 14 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 15 C -0.16 -3.12 7.86 -25.81 -0.20 -3.32 16 16 C 0.16 3.92 7.44 -2.98 -0.02 3.90 16 17 N -0.60 -15.35 3.57 -170.76 -0.61 -15.96 16 18 C -0.22 -6.08 10.35 -15.06 -0.16 -6.23 16 19 H 0.09 2.25 3.94 -52.49 -0.21 2.04 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.92 -27.54 11.45 55.49 0.64 -26.91 16 22 Si 0.90 22.02 29.55 -169.99 -5.02 16.99 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C -0.12 -1.62 9.54 -39.44 -0.38 -2.00 16 27 C -0.07 -0.76 9.88 -39.25 -0.39 -1.15 16 28 C -0.08 -1.00 5.75 -106.71 -0.61 -1.61 16 29 C -0.11 -1.00 9.37 -39.52 -0.37 -1.37 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 32 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.06 0.93 7.12 -51.93 -0.37 0.56 16 36 H 0.08 1.43 6.40 -51.93 -0.33 1.09 16 37 H 0.07 1.35 6.60 -51.93 -0.34 1.01 16 38 H 0.09 1.62 7.77 -51.93 -0.40 1.21 16 39 H 0.08 1.35 7.57 -51.93 -0.39 0.95 16 40 H 0.07 1.38 8.10 -51.93 -0.42 0.95 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.82 7.29 -51.93 -0.38 1.44 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.15 1.86 7.61 -52.49 -0.40 1.46 16 46 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -33.37 381.29 -10.69 -44.06 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.60 Total: 1.85 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -4.35 Total: 3.04 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.55 Total: -60.87 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.37 -10.69 -44.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085712697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.274 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds